Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08895

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08885 and ABID97_RS08890 overlap by 4 nucleotidesABID97_RS08890 and ABID97_RS08895 are separated by 40 nucleotidesABID97_RS08895 and ABID97_RS08900 are separated by 43 nucleotides ABID97_RS08885: ABID97_RS08885 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,861,624 to 1,862,949 _RS08885 ABID97_RS08890: ABID97_RS08890 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 1,862,946 to 1,863,413 _RS08890 ABID97_RS08895: ABID97_RS08895 - ABC transporter substrate-binding protein, at 1,863,454 to 1,864,617 _RS08895 ABID97_RS08900: ABID97_RS08900 - branched-chain amino acid ABC transporter permease, at 1,864,661 to 1,865,716 _RS08900 Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -1 0 1at 1862.708 kb on - strand, within ABID97_RS08885at 1863.046 kb on - strand, within ABID97_RS08890at 1863.449 kb on - strandat 1863.947 kb on - strand, within ABID97_RS08895at 1863.982 kb on + strand, within ABID97_RS08895at 1864.187 kb on - strand, within ABID97_RS08895at 1864.187 kb on - strand, within ABID97_RS08895at 1864.525 kb on + strandat 1864.660 kb on + strandat 1864.661 kb on - strandat 1865.412 kb on - strand, within ABID97_RS08900at 1865.475 kb on - strand, within ABID97_RS08900at 1865.475 kb on - strand, within ABID97_RS08900

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,862,708 - ABID97_RS08885 0.82 +0.1
1,863,046 - ABID97_RS08890 0.21 +0.1
1,863,449 - -0.2
1,863,947 - ABID97_RS08895 0.42 -0.3
1,863,982 + ABID97_RS08895 0.45 -0.9
1,864,187 - ABID97_RS08895 0.63 -0.5
1,864,187 - ABID97_RS08895 0.63 -0.7
1,864,525 + -0.5
1,864,660 + -0.6
1,864,661 - -1.0
1,865,412 - ABID97_RS08900 0.71 -1.3
1,865,475 - ABID97_RS08900 0.77 -0.3
1,865,475 - ABID97_RS08900 0.77 +0.3

Or see this region's nucleotide sequence