Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06120

Experiment: D-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS06110 and ABID97_RS06115 are separated by 183 nucleotidesABID97_RS06115 and ABID97_RS06120 are separated by 25 nucleotidesABID97_RS06120 and ABID97_RS06125 are separated by 233 nucleotidesABID97_RS06125 and ABID97_RS06130 are separated by 22 nucleotidesABID97_RS06130 and ABID97_RS06135 are separated by 7 nucleotides ABID97_RS06110: ABID97_RS06110 - glycine zipper domain-containing protein, at 1,290,743 to 1,291,249 _RS06110 ABID97_RS06115: ABID97_RS06115 - hypothetical protein, at 1,291,433 to 1,292,170 _RS06115 ABID97_RS06120: ABID97_RS06120 - alpha/beta hydrolase-fold protein, at 1,292,196 to 1,293,176 _RS06120 ABID97_RS06125: ABID97_RS06125 - I78 family peptidase inhibitor, at 1,293,410 to 1,293,784 _RS06125 ABID97_RS06130: ABID97_RS06130 - hypothetical protein, at 1,293,807 to 1,293,956 _RS06130 ABID97_RS06135: ABID97_RS06135 - diaminopimelate epimerase, at 1,293,964 to 1,294,848 _RS06135 Position (kb) 1292 1293 1294Strain fitness (log2 ratio) -2 -1 0 1 2at 1291.240 kb on + strandat 1291.240 kb on + strandat 1291.295 kb on + strandat 1291.376 kb on + strandat 1291.376 kb on + strandat 1291.376 kb on + strandat 1291.377 kb on - strandat 1291.377 kb on - strandat 1291.420 kb on + strandat 1291.420 kb on + strandat 1291.421 kb on - strandat 1291.421 kb on - strandat 1291.670 kb on + strand, within ABID97_RS06115at 1291.913 kb on - strand, within ABID97_RS06115at 1292.263 kb on + strandat 1292.263 kb on + strandat 1292.263 kb on + strandat 1292.294 kb on - strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.318 kb on - strand, within ABID97_RS06120at 1292.318 kb on - strand, within ABID97_RS06120at 1292.318 kb on - strandat 1292.318 kb on - strand, within ABID97_RS06120at 1292.318 kb on - strand, within ABID97_RS06120at 1292.438 kb on - strand, within ABID97_RS06120at 1292.438 kb on - strand, within ABID97_RS06120at 1292.453 kb on - strand, within ABID97_RS06120at 1292.577 kb on + strand, within ABID97_RS06120at 1292.638 kb on + strand, within ABID97_RS06120at 1292.639 kb on - strand, within ABID97_RS06120at 1292.639 kb on - strand, within ABID97_RS06120at 1292.662 kb on + strand, within ABID97_RS06120at 1292.662 kb on + strand, within ABID97_RS06120at 1292.662 kb on + strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.807 kb on - strand, within ABID97_RS06120at 1292.828 kb on - strand, within ABID97_RS06120at 1292.842 kb on + strand, within ABID97_RS06120at 1292.842 kb on + strand, within ABID97_RS06120at 1292.843 kb on - strand, within ABID97_RS06120at 1292.858 kb on - strand, within ABID97_RS06120at 1293.309 kb on + strandat 1293.310 kb on - strandat 1293.353 kb on + strandat 1293.354 kb on - strandat 1293.370 kb on + strandat 1293.370 kb on + strandat 1293.385 kb on + strandat 1293.385 kb on + strandat 1293.385 kb on + strandat 1293.386 kb on - strandat 1293.608 kb on + strand, within ABID97_RS06125at 1293.789 kb on - strandat 1293.789 kb on - strandat 1293.789 kb on - strandat 1293.789 kb on - strandat 1293.789 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
remove
1,291,240 + -1.7
1,291,240 + +0.2
1,291,295 + -0.6
1,291,376 + -0.9
1,291,376 + -0.4
1,291,376 + -0.7
1,291,377 - -0.4
1,291,377 - -0.3
1,291,420 + -0.4
1,291,420 + -2.0
1,291,421 - -0.4
1,291,421 - +1.8
1,291,670 + ABID97_RS06115 0.32 -0.4
1,291,913 - ABID97_RS06115 0.65 -0.5
1,292,263 + -0.9
1,292,263 + -1.6
1,292,263 + -0.3
1,292,294 - ABID97_RS06120 0.10 +0.9
1,292,317 + ABID97_RS06120 0.12 -0.6
1,292,317 + ABID97_RS06120 0.12 -0.8
1,292,317 + ABID97_RS06120 0.12 -0.7
1,292,317 + ABID97_RS06120 0.12 -0.2
1,292,317 + ABID97_RS06120 0.12 -0.1
1,292,317 + ABID97_RS06120 0.12 -0.1
1,292,317 + ABID97_RS06120 0.12 -0.5
1,292,317 + ABID97_RS06120 0.12 -0.9
1,292,317 + ABID97_RS06120 0.12 -0.6
1,292,317 + ABID97_RS06120 0.12 +0.5
1,292,317 + ABID97_RS06120 0.12 -0.5
1,292,317 + ABID97_RS06120 0.12 -0.6
1,292,317 + ABID97_RS06120 0.12 -0.0
1,292,318 - ABID97_RS06120 0.12 -0.6
1,292,318 - ABID97_RS06120 0.12 +0.4
1,292,318 - +0.2
1,292,318 - ABID97_RS06120 0.12 +0.1
1,292,318 - ABID97_RS06120 0.12 -0.1
1,292,438 - ABID97_RS06120 0.25 -0.3
1,292,438 - ABID97_RS06120 0.25 -0.5
1,292,453 - ABID97_RS06120 0.26 -0.3
1,292,577 + ABID97_RS06120 0.39 +0.2
1,292,638 + ABID97_RS06120 0.45 -1.8
1,292,639 - ABID97_RS06120 0.45 -0.5
1,292,639 - ABID97_RS06120 0.45 -2.3
1,292,662 + ABID97_RS06120 0.48 -0.1
1,292,662 + ABID97_RS06120 0.48 +0.4
1,292,662 + ABID97_RS06120 0.48 +0.5
1,292,663 - ABID97_RS06120 0.48 -1.3
1,292,663 - ABID97_RS06120 0.48 -1.0
1,292,663 - ABID97_RS06120 0.48 -0.1
1,292,663 - ABID97_RS06120 0.48 -0.1
1,292,794 + ABID97_RS06120 0.61 -0.6
1,292,794 + ABID97_RS06120 0.61 -0.6
1,292,794 + ABID97_RS06120 0.61 -0.2
1,292,794 + ABID97_RS06120 0.61 -1.2
1,292,795 - ABID97_RS06120 0.61 -0.1
1,292,795 - ABID97_RS06120 0.61 -0.8
1,292,795 - ABID97_RS06120 0.61 -0.5
1,292,795 - ABID97_RS06120 0.61 +1.2
1,292,795 - ABID97_RS06120 0.61 -0.8
1,292,795 - ABID97_RS06120 0.61 -1.4
1,292,807 - ABID97_RS06120 0.62 -0.3
1,292,828 - ABID97_RS06120 0.64 +0.8
1,292,842 + ABID97_RS06120 0.66 -1.1
1,292,842 + ABID97_RS06120 0.66 -0.3
1,292,843 - ABID97_RS06120 0.66 -0.6
1,292,858 - ABID97_RS06120 0.67 -0.9
1,293,309 + +0.6
1,293,310 - -0.3
1,293,353 + -0.5
1,293,354 - +0.4
1,293,370 + -0.2
1,293,370 + -0.2
1,293,385 + -0.3
1,293,385 + -0.1
1,293,385 + -0.8
1,293,386 - -0.3
1,293,608 + ABID97_RS06125 0.53 -0.2
1,293,789 - -0.5
1,293,789 - +1.8
1,293,789 - +1.2
1,293,789 - -0.4
1,293,789 - -1.1

Or see this region's nucleotide sequence