Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03225 and ABID97_RS03230 are separated by 16 nucleotides ABID97_RS03230 and ABID97_RS03235 overlap by 55 nucleotides ABID97_RS03235 and ABID97_RS03240 are separated by 2 nucleotides
ABID97_RS03225: ABID97_RS03225 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 653,309 to 654,139
_RS03225
ABID97_RS03230: ABID97_RS03230 - uracil-DNA glycosylase family protein, at 654,156 to 654,785
_RS03230
ABID97_RS03235: ABID97_RS03235 - amidohydrolase, at 654,731 to 656,404
_RS03235
ABID97_RS03240: ABID97_RS03240 - tripartite tricarboxylate transporter substrate binding protein, at 656,407 to 657,396
_RS03240
Position (kb) 654
655
656
657 Strain fitness (log2 ratio) -1
0
1 at 653.828 kb on + strand, within ABID97_RS03225 at 653.855 kb on + strand, within ABID97_RS03225 at 653.856 kb on - strand, within ABID97_RS03225 at 653.856 kb on - strand, within ABID97_RS03225 at 654.138 kb on - strand at 654.138 kb on - strand at 654.369 kb on + strand, within ABID97_RS03230 at 654.370 kb on - strand, within ABID97_RS03230 at 654.783 kb on + strand at 654.951 kb on + strand, within ABID97_RS03235 at 654.952 kb on - strand, within ABID97_RS03235 at 654.952 kb on - strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.059 kb on + strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.060 kb on - strand, within ABID97_RS03235 at 655.185 kb on + strand, within ABID97_RS03235 at 655.186 kb on - strand, within ABID97_RS03235 at 655.407 kb on + strand, within ABID97_RS03235 at 655.408 kb on - strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.449 kb on + strand, within ABID97_RS03235 at 655.581 kb on + strand, within ABID97_RS03235 at 655.741 kb on - strand, within ABID97_RS03235 at 655.903 kb on - strand, within ABID97_RS03235 at 655.903 kb on - strand, within ABID97_RS03235 at 655.917 kb on + strand, within ABID97_RS03235 at 655.918 kb on - strand, within ABID97_RS03235 at 655.918 kb on - strand, within ABID97_RS03235 at 656.110 kb on - strand, within ABID97_RS03235 at 656.637 kb on - strand, within ABID97_RS03240 at 656.916 kb on - strand, within ABID97_RS03240 at 656.916 kb on - strand, within ABID97_RS03240 at 657.050 kb on + strand, within ABID97_RS03240 at 657.065 kb on + strand, within ABID97_RS03240 at 657.066 kb on - strand, within ABID97_RS03240 at 657.066 kb on - strand, within ABID97_RS03240 at 657.114 kb on - strand, within ABID97_RS03240
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 653,828 + ABID97_RS03225 0.62 -0.2 653,855 + ABID97_RS03225 0.66 -0.2 653,856 - ABID97_RS03225 0.66 -0.1 653,856 - ABID97_RS03225 0.66 -0.1 654,138 - +0.5 654,138 - +0.8 654,369 + ABID97_RS03230 0.34 +0.1 654,370 - ABID97_RS03230 0.34 -0.1 654,783 + -0.0 654,951 + ABID97_RS03235 0.13 +0.8 654,952 - ABID97_RS03235 0.13 -0.2 654,952 - ABID97_RS03235 0.13 -0.1 655,059 + ABID97_RS03235 0.20 +0.5 655,059 + ABID97_RS03235 0.20 +0.1 655,059 + ABID97_RS03235 0.20 -0.5 655,059 + ABID97_RS03235 0.20 +0.2 655,060 - ABID97_RS03235 0.20 +0.3 655,060 - ABID97_RS03235 0.20 -0.6 655,060 - ABID97_RS03235 0.20 -0.4 655,060 - ABID97_RS03235 0.20 +0.9 655,185 + ABID97_RS03235 0.27 +0.0 655,186 - ABID97_RS03235 0.27 +0.1 655,407 + ABID97_RS03235 0.40 +0.4 655,408 - ABID97_RS03235 0.40 +0.0 655,449 + ABID97_RS03235 0.43 +0.2 655,449 + ABID97_RS03235 0.43 +0.2 655,449 + ABID97_RS03235 0.43 +0.7 655,449 + ABID97_RS03235 0.43 +0.3 655,581 + ABID97_RS03235 0.51 +0.6 655,741 - ABID97_RS03235 0.60 +0.5 655,903 - ABID97_RS03235 0.70 +0.2 655,903 - ABID97_RS03235 0.70 -0.2 655,917 + ABID97_RS03235 0.71 +0.9 655,918 - ABID97_RS03235 0.71 +0.1 655,918 - ABID97_RS03235 0.71 +0.9 656,110 - ABID97_RS03235 0.82 +1.1 656,637 - ABID97_RS03240 0.23 +0.2 656,916 - ABID97_RS03240 0.51 +0.5 656,916 - ABID97_RS03240 0.51 +0.1 657,050 + ABID97_RS03240 0.65 +0.6 657,065 + ABID97_RS03240 0.66 -0.4 657,066 - ABID97_RS03240 0.67 -0.1 657,066 - ABID97_RS03240 0.67 +0.3 657,114 - ABID97_RS03240 0.71 +0.3
Or see this region's nucleotide sequence