Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24310 and IAI46_24315 are separated by 146 nucleotides IAI46_24315 and IAI46_24320 are separated by 165 nucleotides IAI46_24320 and IAI46_24325 are separated by 348 nucleotides
IAI46_24310: IAI46_24310 - cyclic-guanylate-specific phosphodiesterase, at 5,189,959 to 5,190,744
_24310
IAI46_24315: IAI46_24315 - 4-oxalocrotonate tautomerase family protein, at 5,190,891 to 5,191,094
_24315
IAI46_24320: IAI46_24320 - sugar kinase, at 5,191,260 to 5,192,192
_24320
IAI46_24325: IAI46_24325 - ketol-acid reductoisomerase, at 5,192,541 to 5,194,016
_24325
Position (kb) 5191
5192
5193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5190.356 kb on + strand, within IAI46_24310 at 5190.357 kb on - strand, within IAI46_24310 at 5190.357 kb on - strand, within IAI46_24310 at 5190.427 kb on - strand, within IAI46_24310 at 5190.540 kb on - strand, within IAI46_24310 at 5190.646 kb on - strand, within IAI46_24310 at 5190.647 kb on + strand, within IAI46_24310 at 5190.647 kb on + strand, within IAI46_24310 at 5190.648 kb on - strand, within IAI46_24310 at 5190.685 kb on + strand at 5190.685 kb on + strand at 5190.685 kb on + strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.686 kb on - strand at 5190.687 kb on + strand at 5190.687 kb on + strand at 5190.687 kb on + strand at 5190.687 kb on + strand at 5190.688 kb on - strand at 5190.688 kb on - strand at 5190.752 kb on - strand at 5190.832 kb on - strand at 5190.832 kb on - strand at 5190.852 kb on + strand at 5190.852 kb on + strand at 5190.862 kb on - strand at 5190.862 kb on - strand at 5190.897 kb on + strand at 5190.901 kb on + strand at 5190.902 kb on - strand at 5190.902 kb on - strand at 5191.030 kb on + strand, within IAI46_24315 at 5191.031 kb on - strand, within IAI46_24315 at 5191.031 kb on - strand, within IAI46_24315 at 5191.092 kb on + strand at 5191.092 kb on + strand at 5191.093 kb on - strand at 5191.259 kb on + strand at 5191.259 kb on + strand at 5191.329 kb on - strand at 5191.354 kb on + strand, within IAI46_24320 at 5191.354 kb on + strand, within IAI46_24320 at 5191.358 kb on + strand, within IAI46_24320 at 5191.358 kb on + strand, within IAI46_24320 at 5191.358 kb on + strand, within IAI46_24320 at 5191.359 kb on - strand, within IAI46_24320 at 5191.359 kb on - strand, within IAI46_24320 at 5191.359 kb on - strand, within IAI46_24320 at 5191.366 kb on + strand, within IAI46_24320 at 5191.367 kb on - strand, within IAI46_24320 at 5191.367 kb on - strand, within IAI46_24320 at 5191.367 kb on - strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.368 kb on + strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.369 kb on - strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.410 kb on + strand, within IAI46_24320 at 5191.411 kb on - strand, within IAI46_24320 at 5191.482 kb on - strand, within IAI46_24320 at 5191.482 kb on - strand, within IAI46_24320 at 5191.524 kb on + strand, within IAI46_24320 at 5191.524 kb on + strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.525 kb on - strand, within IAI46_24320 at 5191.564 kb on - strand, within IAI46_24320 at 5191.566 kb on + strand, within IAI46_24320 at 5191.650 kb on + strand, within IAI46_24320 at 5191.650 kb on + strand, within IAI46_24320 at 5191.651 kb on - strand, within IAI46_24320 at 5191.654 kb on + strand, within IAI46_24320 at 5191.654 kb on + strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.655 kb on - strand, within IAI46_24320 at 5191.656 kb on + strand, within IAI46_24320 at 5191.657 kb on - strand, within IAI46_24320 at 5191.661 kb on + strand, within IAI46_24320 at 5191.662 kb on - strand, within IAI46_24320 at 5191.717 kb on + strand, within IAI46_24320 at 5191.718 kb on - strand, within IAI46_24320 at 5191.767 kb on + strand, within IAI46_24320 at 5191.928 kb on - strand, within IAI46_24320 at 5192.036 kb on + strand, within IAI46_24320 at 5192.070 kb on + strand, within IAI46_24320 at 5192.081 kb on - strand, within IAI46_24320 at 5192.104 kb on + strand at 5192.166 kb on - strand at 5192.205 kb on - strand at 5192.226 kb on + strand at 5192.226 kb on + strand at 5192.227 kb on - strand at 5192.239 kb on - strand at 5192.239 kb on - strand at 5192.239 kb on - strand at 5192.339 kb on - strand at 5192.347 kb on - strand at 5192.393 kb on - strand at 5192.414 kb on + strand at 5192.414 kb on + strand at 5192.414 kb on + strand at 5192.414 kb on + strand at 5192.414 kb on + strand at 5192.414 kb on + strand at 5192.415 kb on - strand at 5192.415 kb on - strand at 5192.418 kb on - strand at 5192.418 kb on - strand at 5192.438 kb on + strand at 5192.438 kb on + strand at 5192.438 kb on + strand at 5192.439 kb on - strand at 5192.454 kb on + strand at 5192.454 kb on + strand at 5192.454 kb on + strand at 5192.454 kb on + strand at 5192.455 kb on - strand at 5192.455 kb on - strand at 5192.473 kb on + strand at 5192.474 kb on - strand at 5192.474 kb on - strand at 5192.474 kb on - strand at 5192.474 kb on - strand at 5192.478 kb on + strand at 5192.479 kb on - strand at 5192.499 kb on + strand at 5192.500 kb on - strand at 5192.508 kb on + strand at 5192.508 kb on + strand at 5192.509 kb on - strand at 5192.518 kb on - strand at 5192.538 kb on + strand at 5192.539 kb on - strand at 5192.542 kb on + strand at 5192.542 kb on + strand at 5192.543 kb on - strand at 5192.567 kb on + strand at 5192.568 kb on - strand at 5192.576 kb on + strand at 5192.576 kb on + strand at 5192.576 kb on + strand at 5192.576 kb on + strand at 5192.577 kb on - strand at 5192.577 kb on - strand at 5192.578 kb on + strand at 5192.578 kb on + strand at 5192.579 kb on - strand at 5192.579 kb on - strand at 5192.579 kb on - strand at 5192.579 kb on - strand at 5192.658 kb on + strand at 5192.658 kb on + strand at 5192.659 kb on - strand at 5192.659 kb on - strand at 5192.659 kb on - strand at 5192.753 kb on - strand, within IAI46_24325 at 5192.780 kb on + strand, within IAI46_24325 at 5192.781 kb on - strand, within IAI46_24325 at 5192.781 kb on - strand, within IAI46_24325 at 5192.797 kb on + strand, within IAI46_24325 at 5192.798 kb on - strand, within IAI46_24325 at 5192.807 kb on + strand, within IAI46_24325 at 5192.808 kb on - strand, within IAI46_24325 at 5192.854 kb on + strand, within IAI46_24325 at 5192.854 kb on + strand, within IAI46_24325 at 5192.855 kb on - strand, within IAI46_24325 at 5192.857 kb on + strand, within IAI46_24325 at 5192.857 kb on + strand, within IAI46_24325 at 5192.876 kb on + strand, within IAI46_24325 at 5192.876 kb on + strand, within IAI46_24325 at 5192.877 kb on - strand, within IAI46_24325 at 5192.877 kb on - strand, within IAI46_24325 at 5192.877 kb on - strand, within IAI46_24325 at 5192.877 kb on - strand, within IAI46_24325 at 5192.940 kb on + strand, within IAI46_24325 at 5192.941 kb on - strand, within IAI46_24325 at 5192.956 kb on + strand, within IAI46_24325 at 5192.957 kb on - strand, within IAI46_24325 at 5193.161 kb on - strand, within IAI46_24325
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 5,190,356 + IAI46_24310 0.51 +0.1 5,190,357 - IAI46_24310 0.51 +0.3 5,190,357 - IAI46_24310 0.51 +1.5 5,190,427 - IAI46_24310 0.60 +0.5 5,190,540 - IAI46_24310 0.74 +2.1 5,190,646 - IAI46_24310 0.87 +0.6 5,190,647 + IAI46_24310 0.88 -0.2 5,190,647 + IAI46_24310 0.88 +0.2 5,190,648 - IAI46_24310 0.88 -0.6 5,190,685 + -0.1 5,190,685 + -0.4 5,190,685 + +0.8 5,190,686 - +0.1 5,190,686 - -0.2 5,190,686 - +0.8 5,190,686 - -0.4 5,190,686 - -0.7 5,190,686 - +0.2 5,190,686 - +0.2 5,190,686 - -1.0 5,190,686 - +0.0 5,190,687 + -0.2 5,190,687 + +0.4 5,190,687 + -0.1 5,190,687 + -0.5 5,190,688 - +0.7 5,190,688 - -0.1 5,190,752 - -0.1 5,190,832 - +0.6 5,190,832 - -0.1 5,190,852 + +0.8 5,190,852 + +0.4 5,190,862 - +0.1 5,190,862 - -0.2 5,190,897 + -0.8 5,190,901 + +0.5 5,190,902 - -0.7 5,190,902 - -0.7 5,191,030 + IAI46_24315 0.68 -0.9 5,191,031 - IAI46_24315 0.69 -0.4 5,191,031 - IAI46_24315 0.69 +1.4 5,191,092 + +0.0 5,191,092 + -0.2 5,191,093 - +1.4 5,191,259 + +0.4 5,191,259 + +0.7 5,191,329 - +0.4 5,191,354 + IAI46_24320 0.10 -0.5 5,191,354 + IAI46_24320 0.10 -0.7 5,191,358 + IAI46_24320 0.11 -1.3 5,191,358 + IAI46_24320 0.11 +0.1 5,191,358 + IAI46_24320 0.11 +0.7 5,191,359 - IAI46_24320 0.11 -0.6 5,191,359 - IAI46_24320 0.11 -0.4 5,191,359 - IAI46_24320 0.11 +1.1 5,191,366 + IAI46_24320 0.11 -0.3 5,191,367 - IAI46_24320 0.11 -0.1 5,191,367 - IAI46_24320 0.11 +0.4 5,191,367 - IAI46_24320 0.11 +0.8 5,191,368 + IAI46_24320 0.12 +0.0 5,191,368 + IAI46_24320 0.12 +0.5 5,191,368 + IAI46_24320 0.12 +0.1 5,191,368 + IAI46_24320 0.12 -0.5 5,191,368 + IAI46_24320 0.12 +0.5 5,191,368 + IAI46_24320 0.12 +0.3 5,191,369 - IAI46_24320 0.12 -0.0 5,191,369 - IAI46_24320 0.12 -0.5 5,191,369 - IAI46_24320 0.12 +0.3 5,191,369 - IAI46_24320 0.12 +1.6 5,191,369 - IAI46_24320 0.12 +0.0 5,191,369 - IAI46_24320 0.12 +0.9 5,191,369 - IAI46_24320 0.12 +0.7 5,191,410 + IAI46_24320 0.16 +0.4 5,191,410 + IAI46_24320 0.16 -0.1 5,191,410 + IAI46_24320 0.16 -0.4 5,191,410 + IAI46_24320 0.16 +0.1 5,191,411 - IAI46_24320 0.16 +0.8 5,191,482 - IAI46_24320 0.24 -0.2 5,191,482 - IAI46_24320 0.24 +0.4 5,191,524 + IAI46_24320 0.28 -0.2 5,191,524 + IAI46_24320 0.28 +0.4 5,191,525 - IAI46_24320 0.28 +0.7 5,191,525 - IAI46_24320 0.28 +0.9 5,191,525 - IAI46_24320 0.28 +0.6 5,191,525 - IAI46_24320 0.28 +0.1 5,191,564 - IAI46_24320 0.33 +1.6 5,191,566 + IAI46_24320 0.33 -0.0 5,191,650 + IAI46_24320 0.42 +0.1 5,191,650 + IAI46_24320 0.42 +0.3 5,191,651 - IAI46_24320 0.42 -0.2 5,191,654 + IAI46_24320 0.42 -0.2 5,191,654 + IAI46_24320 0.42 +0.8 5,191,655 - IAI46_24320 0.42 +0.8 5,191,655 - IAI46_24320 0.42 -0.2 5,191,655 - IAI46_24320 0.42 -0.5 5,191,655 - IAI46_24320 0.42 +0.0 5,191,655 - IAI46_24320 0.42 -0.8 5,191,656 + IAI46_24320 0.42 -0.2 5,191,657 - IAI46_24320 0.43 -0.2 5,191,661 + IAI46_24320 0.43 -0.1 5,191,662 - IAI46_24320 0.43 -0.9 5,191,717 + IAI46_24320 0.49 -0.1 5,191,718 - IAI46_24320 0.49 +0.7 5,191,767 + IAI46_24320 0.54 -0.0 5,191,928 - IAI46_24320 0.72 +0.3 5,192,036 + IAI46_24320 0.83 -0.1 5,192,070 + IAI46_24320 0.87 +0.3 5,192,081 - IAI46_24320 0.88 +0.6 5,192,104 + +1.1 5,192,166 - +0.1 5,192,205 - +0.8 5,192,226 + +0.1 5,192,226 + -0.5 5,192,227 - +0.1 5,192,239 - +0.6 5,192,239 - -0.4 5,192,239 - +0.4 5,192,339 - -0.4 5,192,347 - -0.4 5,192,393 - +0.5 5,192,414 + +0.8 5,192,414 + +0.2 5,192,414 + -0.0 5,192,414 + -0.4 5,192,414 + +0.0 5,192,414 + -1.9 5,192,415 - +0.3 5,192,415 - +0.5 5,192,418 - +0.4 5,192,418 - +0.4 5,192,438 + -0.4 5,192,438 + +0.1 5,192,438 + +0.6 5,192,439 - -0.5 5,192,454 + +0.3 5,192,454 + +0.0 5,192,454 + -0.3 5,192,454 + +1.2 5,192,455 - +0.2 5,192,455 - -0.1 5,192,473 + +0.1 5,192,474 - +0.6 5,192,474 - -0.0 5,192,474 - -1.6 5,192,474 - -0.6 5,192,478 + -0.0 5,192,479 - -0.8 5,192,499 + +0.2 5,192,500 - -0.1 5,192,508 + +0.0 5,192,508 + -0.2 5,192,509 - +0.0 5,192,518 - +0.4 5,192,538 + +0.4 5,192,539 - -0.2 5,192,542 + -0.8 5,192,542 + +0.3 5,192,543 - -1.0 5,192,567 + +0.8 5,192,568 - -0.3 5,192,576 + +0.8 5,192,576 + -0.9 5,192,576 + -0.9 5,192,576 + +0.7 5,192,577 - -0.4 5,192,577 - -0.1 5,192,578 + -0.6 5,192,578 + +1.9 5,192,579 - -0.0 5,192,579 - -0.1 5,192,579 - +0.8 5,192,579 - +0.1 5,192,658 + -0.3 5,192,658 + -0.1 5,192,659 - -0.1 5,192,659 - +0.9 5,192,659 - -0.9 5,192,753 - IAI46_24325 0.14 -0.9 5,192,780 + IAI46_24325 0.16 -0.4 5,192,781 - IAI46_24325 0.16 -0.3 5,192,781 - IAI46_24325 0.16 -0.1 5,192,797 + IAI46_24325 0.17 +0.4 5,192,798 - IAI46_24325 0.17 -0.2 5,192,807 + IAI46_24325 0.18 -0.8 5,192,808 - IAI46_24325 0.18 +0.1 5,192,854 + IAI46_24325 0.21 -0.2 5,192,854 + IAI46_24325 0.21 +0.4 5,192,855 - IAI46_24325 0.21 -0.5 5,192,857 + IAI46_24325 0.21 +0.3 5,192,857 + IAI46_24325 0.21 -0.3 5,192,876 + IAI46_24325 0.23 -0.6 5,192,876 + IAI46_24325 0.23 -0.5 5,192,877 - IAI46_24325 0.23 -0.6 5,192,877 - IAI46_24325 0.23 +0.5 5,192,877 - IAI46_24325 0.23 -0.2 5,192,877 - IAI46_24325 0.23 -1.7 5,192,940 + IAI46_24325 0.27 +0.4 5,192,941 - IAI46_24325 0.27 -0.3 5,192,956 + IAI46_24325 0.28 -1.8 5,192,957 - IAI46_24325 0.28 +0.1 5,193,161 - IAI46_24325 0.42 -0.7
Or see this region's nucleotide sequence