Strain Fitness in Serratia liquefaciens MT49 around IAI46_23650

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23645 and IAI46_23650 are separated by 61 nucleotidesIAI46_23650 and IAI46_23655 are separated by 288 nucleotides IAI46_23645: IAI46_23645 - MFS transporter TsgA, at 5,028,182 to 5,029,366 _23645 IAI46_23650: IAI46_23650 - cytosine deaminase, at 5,029,428 to 5,030,711 _23650 IAI46_23655: IAI46_23655 - nitrite reductase large subunit, at 5,031,000 to 5,033,549 _23655 Position (kb) 5029 5030 5031Strain fitness (log2 ratio) -2 -1 0 1 2at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.550 kb on + strand, within IAI46_23645at 5028.551 kb on - strand, within IAI46_23645at 5028.551 kb on - strand, within IAI46_23645at 5028.554 kb on + strand, within IAI46_23645at 5028.554 kb on + strand, within IAI46_23645at 5028.554 kb on + strand, within IAI46_23645at 5028.554 kb on + strand, within IAI46_23645at 5028.555 kb on - strand, within IAI46_23645at 5028.555 kb on - strand, within IAI46_23645at 5028.555 kb on - strand, within IAI46_23645at 5028.555 kb on - strand, within IAI46_23645at 5028.555 kb on - strand, within IAI46_23645at 5028.677 kb on + strand, within IAI46_23645at 5028.677 kb on + strand, within IAI46_23645at 5028.677 kb on + strand, within IAI46_23645at 5028.678 kb on - strand, within IAI46_23645at 5028.678 kb on - strand, within IAI46_23645at 5028.678 kb on - strand, within IAI46_23645at 5028.678 kb on - strand, within IAI46_23645at 5028.698 kb on + strand, within IAI46_23645at 5028.698 kb on + strand, within IAI46_23645at 5028.698 kb on + strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.699 kb on - strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.702 kb on + strand, within IAI46_23645at 5028.703 kb on - strand, within IAI46_23645at 5028.703 kb on - strand, within IAI46_23645at 5028.703 kb on - strand, within IAI46_23645at 5028.703 kb on - strand, within IAI46_23645at 5028.703 kb on - strand, within IAI46_23645at 5028.703 kb on - strand, within IAI46_23645at 5028.706 kb on + strand, within IAI46_23645at 5028.707 kb on - strand, within IAI46_23645at 5028.797 kb on - strand, within IAI46_23645at 5028.833 kb on + strand, within IAI46_23645at 5028.833 kb on + strand, within IAI46_23645at 5028.834 kb on - strand, within IAI46_23645at 5028.901 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.944 kb on + strand, within IAI46_23645at 5028.945 kb on - strand, within IAI46_23645at 5028.945 kb on - strand, within IAI46_23645at 5028.945 kb on - strand, within IAI46_23645at 5028.945 kb on - strand, within IAI46_23645at 5028.945 kb on - strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.040 kb on + strand, within IAI46_23645at 5029.041 kb on - strand, within IAI46_23645at 5029.041 kb on - strand, within IAI46_23645at 5029.041 kb on - strand, within IAI46_23645at 5029.041 kb on - strand, within IAI46_23645at 5029.041 kb on - strand, within IAI46_23645at 5029.079 kb on + strand, within IAI46_23645at 5029.080 kb on - strand, within IAI46_23645at 5029.080 kb on - strand, within IAI46_23645at 5029.082 kb on + strand, within IAI46_23645at 5029.082 kb on + strand, within IAI46_23645at 5029.082 kb on + strand, within IAI46_23645at 5029.082 kb on + strand, within IAI46_23645at 5029.083 kb on - strand, within IAI46_23645at 5029.083 kb on - strand, within IAI46_23645at 5029.083 kb on - strand, within IAI46_23645at 5029.083 kb on - strand, within IAI46_23645at 5029.087 kb on + strand, within IAI46_23645at 5029.087 kb on + strand, within IAI46_23645at 5029.087 kb on + strand, within IAI46_23645at 5029.088 kb on - strand, within IAI46_23645at 5029.118 kb on + strand, within IAI46_23645at 5029.119 kb on - strand, within IAI46_23645at 5029.178 kb on - strand, within IAI46_23645at 5029.273 kb on + strandat 5029.273 kb on + strandat 5029.465 kb on + strandat 5029.465 kb on + strandat 5029.466 kb on - strandat 5029.612 kb on + strand, within IAI46_23650at 5029.713 kb on - strand, within IAI46_23650at 5029.793 kb on + strand, within IAI46_23650at 5029.872 kb on - strand, within IAI46_23650at 5029.939 kb on + strand, within IAI46_23650at 5029.939 kb on + strand, within IAI46_23650at 5029.939 kb on + strand, within IAI46_23650at 5029.951 kb on + strand, within IAI46_23650at 5029.951 kb on + strand, within IAI46_23650at 5029.951 kb on + strand, within IAI46_23650at 5029.951 kb on + strand, within IAI46_23650at 5029.951 kb on + strand, within IAI46_23650at 5029.952 kb on - strand, within IAI46_23650at 5029.952 kb on - strand, within IAI46_23650at 5029.952 kb on - strand, within IAI46_23650at 5029.952 kb on - strand, within IAI46_23650at 5029.971 kb on - strand, within IAI46_23650at 5030.089 kb on + strand, within IAI46_23650at 5030.090 kb on - strand, within IAI46_23650at 5030.267 kb on + strand, within IAI46_23650at 5030.310 kb on + strand, within IAI46_23650at 5030.310 kb on + strand, within IAI46_23650at 5030.356 kb on + strand, within IAI46_23650at 5030.357 kb on - strand, within IAI46_23650at 5030.357 kb on - strand, within IAI46_23650at 5030.615 kb on + strandat 5030.671 kb on - strandat 5030.687 kb on + strandat 5030.688 kb on - strandat 5030.749 kb on + strandat 5030.749 kb on + strandat 5030.749 kb on + strandat 5030.749 kb on + strandat 5030.750 kb on - strandat 5030.857 kb on + strandat 5030.898 kb on - strandat 5030.900 kb on - strandat 5030.913 kb on + strandat 5030.913 kb on + strandat 5030.913 kb on + strandat 5030.914 kb on - strandat 5030.915 kb on + strandat 5030.916 kb on - strandat 5030.916 kb on - strandat 5030.916 kb on - strandat 5030.964 kb on - strandat 5030.969 kb on - strandat 5030.974 kb on + strandat 5030.998 kb on + strandat 5031.103 kb on + strandat 5031.153 kb on + strandat 5031.154 kb on - strandat 5031.154 kb on - strandat 5031.221 kb on - strandat 5031.221 kb on - strandat 5031.300 kb on + strand, within IAI46_23655at 5031.301 kb on - strand, within IAI46_23655at 5031.303 kb on + strand, within IAI46_23655at 5031.303 kb on + strand, within IAI46_23655at 5031.304 kb on - strand, within IAI46_23655at 5031.449 kb on - strand, within IAI46_23655at 5031.517 kb on + strand, within IAI46_23655at 5031.517 kb on + strand, within IAI46_23655at 5031.518 kb on - strand, within IAI46_23655at 5031.518 kb on - strand, within IAI46_23655at 5031.518 kb on - strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.577 kb on + strand, within IAI46_23655at 5031.578 kb on - strand, within IAI46_23655at 5031.626 kb on + strand, within IAI46_23655

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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5,028,550 + IAI46_23645 0.31 +0.1
5,028,550 + IAI46_23645 0.31 +1.0
5,028,550 + IAI46_23645 0.31 -0.1
5,028,550 + IAI46_23645 0.31 -1.7
5,028,550 + IAI46_23645 0.31 -1.0
5,028,550 + IAI46_23645 0.31 -0.2
5,028,550 + IAI46_23645 0.31 +0.3
5,028,550 + IAI46_23645 0.31 -0.2
5,028,550 + IAI46_23645 0.31 -0.2
5,028,550 + IAI46_23645 0.31 +0.6
5,028,551 - IAI46_23645 0.31 +1.1
5,028,551 - IAI46_23645 0.31 +0.0
5,028,554 + IAI46_23645 0.31 -0.0
5,028,554 + IAI46_23645 0.31 -0.7
5,028,554 + IAI46_23645 0.31 +0.2
5,028,554 + IAI46_23645 0.31 +1.6
5,028,555 - IAI46_23645 0.31 -1.1
5,028,555 - IAI46_23645 0.31 +1.0
5,028,555 - IAI46_23645 0.31 +0.6
5,028,555 - IAI46_23645 0.31 -0.7
5,028,555 - IAI46_23645 0.31 +0.3
5,028,677 + IAI46_23645 0.42 +0.1
5,028,677 + IAI46_23645 0.42 -0.5
5,028,677 + IAI46_23645 0.42 -1.3
5,028,678 - IAI46_23645 0.42 -0.5
5,028,678 - IAI46_23645 0.42 -0.7
5,028,678 - IAI46_23645 0.42 -0.9
5,028,678 - IAI46_23645 0.42 +0.4
5,028,698 + IAI46_23645 0.44 -1.0
5,028,698 + IAI46_23645 0.44 +0.0
5,028,698 + IAI46_23645 0.44 +1.7
5,028,699 - IAI46_23645 0.44 -0.4
5,028,699 - IAI46_23645 0.44 -0.6
5,028,699 - IAI46_23645 0.44 -0.0
5,028,699 - IAI46_23645 0.44 +0.2
5,028,699 - IAI46_23645 0.44 +0.1
5,028,699 - IAI46_23645 0.44 +0.4
5,028,699 - IAI46_23645 0.44 +0.7
5,028,699 - IAI46_23645 0.44 +1.0
5,028,699 - IAI46_23645 0.44 +0.8
5,028,702 + IAI46_23645 0.44 +0.3
5,028,702 + IAI46_23645 0.44 +0.7
5,028,702 + IAI46_23645 0.44 -0.4
5,028,702 + IAI46_23645 0.44 -0.8
5,028,702 + IAI46_23645 0.44 +0.7
5,028,702 + IAI46_23645 0.44 +0.3
5,028,702 + IAI46_23645 0.44 +0.1
5,028,702 + IAI46_23645 0.44 +0.1
5,028,703 - IAI46_23645 0.44 -0.8
5,028,703 - IAI46_23645 0.44 -0.8
5,028,703 - IAI46_23645 0.44 -1.0
5,028,703 - IAI46_23645 0.44 +1.3
5,028,703 - IAI46_23645 0.44 +0.4
5,028,703 - IAI46_23645 0.44 +1.4
5,028,706 + IAI46_23645 0.44 +0.2
5,028,707 - IAI46_23645 0.44 +0.4
5,028,797 - IAI46_23645 0.52 +1.0
5,028,833 + IAI46_23645 0.55 +0.1
5,028,833 + IAI46_23645 0.55 -0.0
5,028,834 - IAI46_23645 0.55 +0.2
5,028,901 + IAI46_23645 0.61 +0.1
5,028,944 + IAI46_23645 0.64 +0.2
5,028,944 + IAI46_23645 0.64 -0.3
5,028,944 + IAI46_23645 0.64 +0.6
5,028,944 + IAI46_23645 0.64 -0.2
5,028,944 + IAI46_23645 0.64 -0.9
5,028,944 + IAI46_23645 0.64 -0.0
5,028,944 + IAI46_23645 0.64 +0.3
5,028,944 + IAI46_23645 0.64 -0.3
5,028,944 + IAI46_23645 0.64 +0.3
5,028,944 + IAI46_23645 0.64 -0.2
5,028,944 + IAI46_23645 0.64 -0.1
5,028,945 - IAI46_23645 0.64 -0.5
5,028,945 - IAI46_23645 0.64 +0.1
5,028,945 - IAI46_23645 0.64 +0.2
5,028,945 - IAI46_23645 0.64 +1.0
5,028,945 - IAI46_23645 0.64 +0.2
5,029,040 + IAI46_23645 0.72 +0.1
5,029,040 + IAI46_23645 0.72 +0.1
5,029,040 + IAI46_23645 0.72 -0.9
5,029,040 + IAI46_23645 0.72 -0.3
5,029,040 + IAI46_23645 0.72 +0.2
5,029,040 + IAI46_23645 0.72 -1.4
5,029,040 + IAI46_23645 0.72 -0.4
5,029,041 - IAI46_23645 0.72 -0.9
5,029,041 - IAI46_23645 0.72 -0.3
5,029,041 - IAI46_23645 0.72 -0.1
5,029,041 - IAI46_23645 0.72 +0.5
5,029,041 - IAI46_23645 0.72 -0.3
5,029,079 + IAI46_23645 0.76 +0.3
5,029,080 - IAI46_23645 0.76 -1.0
5,029,080 - IAI46_23645 0.76 +1.3
5,029,082 + IAI46_23645 0.76 -0.1
5,029,082 + IAI46_23645 0.76 +0.1
5,029,082 + IAI46_23645 0.76 +0.5
5,029,082 + IAI46_23645 0.76 -0.1
5,029,083 - IAI46_23645 0.76 +0.6
5,029,083 - IAI46_23645 0.76 +0.8
5,029,083 - IAI46_23645 0.76 +0.1
5,029,083 - IAI46_23645 0.76 -1.4
5,029,087 + IAI46_23645 0.76 -0.5
5,029,087 + IAI46_23645 0.76 -0.9
5,029,087 + IAI46_23645 0.76 +0.8
5,029,088 - IAI46_23645 0.76 -0.3
5,029,118 + IAI46_23645 0.79 +0.2
5,029,119 - IAI46_23645 0.79 -1.9
5,029,178 - IAI46_23645 0.84 +1.1
5,029,273 + -0.7
5,029,273 + -0.1
5,029,465 + -2.2
5,029,465 + +0.3
5,029,466 - -1.0
5,029,612 + IAI46_23650 0.14 +1.0
5,029,713 - IAI46_23650 0.22 +0.4
5,029,793 + IAI46_23650 0.28 +0.8
5,029,872 - IAI46_23650 0.35 -0.4
5,029,939 + IAI46_23650 0.40 -0.1
5,029,939 + IAI46_23650 0.40 -0.4
5,029,939 + IAI46_23650 0.40 -0.4
5,029,951 + IAI46_23650 0.41 -0.4
5,029,951 + IAI46_23650 0.41 -0.4
5,029,951 + IAI46_23650 0.41 +0.2
5,029,951 + IAI46_23650 0.41 +0.8
5,029,951 + IAI46_23650 0.41 +0.2
5,029,952 - IAI46_23650 0.41 -0.5
5,029,952 - IAI46_23650 0.41 +1.8
5,029,952 - IAI46_23650 0.41 +0.3
5,029,952 - IAI46_23650 0.41 -0.6
5,029,971 - IAI46_23650 0.42 +0.7
5,030,089 + IAI46_23650 0.51 +0.2
5,030,090 - IAI46_23650 0.52 +0.1
5,030,267 + IAI46_23650 0.65 -0.5
5,030,310 + IAI46_23650 0.69 -0.7
5,030,310 + IAI46_23650 0.69 -0.3
5,030,356 + IAI46_23650 0.72 +0.1
5,030,357 - IAI46_23650 0.72 +0.4
5,030,357 - IAI46_23650 0.72 +1.5
5,030,615 + -0.1
5,030,671 - +0.2
5,030,687 + +1.3
5,030,688 - +0.3
5,030,749 + -0.8
5,030,749 + -0.7
5,030,749 + -0.6
5,030,749 + -0.3
5,030,750 - +0.4
5,030,857 + -0.2
5,030,898 - -0.2
5,030,900 - +0.8
5,030,913 + +0.2
5,030,913 + +1.2
5,030,913 + +0.3
5,030,914 - -0.4
5,030,915 + +2.5
5,030,916 - +0.6
5,030,916 - -1.2
5,030,916 - +0.3
5,030,964 - -0.2
5,030,969 - +1.3
5,030,974 + -0.3
5,030,998 + +0.5
5,031,103 + +0.0
5,031,153 + +0.7
5,031,154 - +0.8
5,031,154 - -0.2
5,031,221 - +0.6
5,031,221 - -0.2
5,031,300 + IAI46_23655 0.12 +0.2
5,031,301 - IAI46_23655 0.12 +0.9
5,031,303 + IAI46_23655 0.12 +0.1
5,031,303 + IAI46_23655 0.12 -1.1
5,031,304 - IAI46_23655 0.12 +1.4
5,031,449 - IAI46_23655 0.18 +0.3
5,031,517 + IAI46_23655 0.20 -0.6
5,031,517 + IAI46_23655 0.20 +0.7
5,031,518 - IAI46_23655 0.20 +0.2
5,031,518 - IAI46_23655 0.20 +1.1
5,031,518 - IAI46_23655 0.20 -0.2
5,031,577 + IAI46_23655 0.23 +0.6
5,031,577 + IAI46_23655 0.23 -0.2
5,031,577 + IAI46_23655 0.23 -0.2
5,031,577 + IAI46_23655 0.23 +0.8
5,031,577 + IAI46_23655 0.23 -0.2
5,031,577 + IAI46_23655 0.23 +0.7
5,031,578 - IAI46_23655 0.23 +0.8
5,031,626 + IAI46_23655 0.25 +0.3

Or see this region's nucleotide sequence