Strain Fitness in Serratia liquefaciens MT49 around IAI46_21865

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21855 and IAI46_21860 are separated by 27 nucleotidesIAI46_21860 and IAI46_21865 are separated by 373 nucleotidesIAI46_21865 and IAI46_21870 are separated by 30 nucleotides IAI46_21855: IAI46_21855 - LysR family transcriptional regulator, at 4,650,821 to 4,651,711 _21855 IAI46_21860: IAI46_21860 - lysozyme, at 4,651,739 to 4,652,224 _21860 IAI46_21865: IAI46_21865 - hypothetical protein, at 4,652,598 to 4,653,695 _21865 IAI46_21870: IAI46_21870 - HBL/NHE enterotoxin family protein, at 4,653,726 to 4,654,802 _21870 Position (kb) 4652 4653 4654Strain fitness (log2 ratio) -2 -1 0 1 2at 4651.644 kb on - strandat 4651.652 kb on + strandat 4651.653 kb on - strandat 4651.709 kb on + strandat 4651.709 kb on + strandat 4651.710 kb on - strandat 4651.710 kb on - strandat 4651.710 kb on - strandat 4651.745 kb on + strandat 4651.746 kb on - strandat 4651.827 kb on + strand, within IAI46_21860at 4651.827 kb on + strand, within IAI46_21860at 4651.827 kb on + strand, within IAI46_21860at 4651.828 kb on - strand, within IAI46_21860at 4652.015 kb on + strand, within IAI46_21860at 4652.015 kb on + strand, within IAI46_21860at 4652.015 kb on + strand, within IAI46_21860at 4652.016 kb on - strand, within IAI46_21860at 4652.016 kb on - strand, within IAI46_21860at 4652.113 kb on + strand, within IAI46_21860at 4652.114 kb on - strand, within IAI46_21860at 4652.129 kb on - strand, within IAI46_21860at 4652.129 kb on - strand, within IAI46_21860at 4652.138 kb on - strand, within IAI46_21860at 4652.185 kb on + strandat 4652.226 kb on + strandat 4652.226 kb on + strandat 4652.415 kb on + strandat 4652.579 kb on + strandat 4652.594 kb on + strandat 4652.624 kb on - strandat 4652.647 kb on + strandat 4652.647 kb on + strandat 4652.648 kb on - strandat 4652.689 kb on - strandat 4652.702 kb on - strandat 4652.728 kb on + strand, within IAI46_21865at 4652.729 kb on - strand, within IAI46_21865at 4652.729 kb on - strand, within IAI46_21865at 4652.732 kb on + strand, within IAI46_21865at 4652.780 kb on - strand, within IAI46_21865at 4652.796 kb on - strand, within IAI46_21865at 4652.810 kb on + strand, within IAI46_21865at 4652.811 kb on - strand, within IAI46_21865at 4652.837 kb on + strand, within IAI46_21865at 4652.838 kb on - strand, within IAI46_21865at 4652.961 kb on + strand, within IAI46_21865at 4652.987 kb on + strand, within IAI46_21865at 4653.003 kb on - strand, within IAI46_21865at 4653.016 kb on + strand, within IAI46_21865at 4653.017 kb on - strand, within IAI46_21865at 4653.017 kb on - strand, within IAI46_21865at 4653.017 kb on - strand, within IAI46_21865at 4653.159 kb on - strand, within IAI46_21865at 4653.182 kb on - strand, within IAI46_21865at 4653.182 kb on - strand, within IAI46_21865at 4653.288 kb on + strand, within IAI46_21865at 4653.288 kb on + strand, within IAI46_21865at 4653.289 kb on - strand, within IAI46_21865at 4653.290 kb on + strand, within IAI46_21865at 4653.290 kb on + strand, within IAI46_21865at 4653.291 kb on - strand, within IAI46_21865at 4653.291 kb on - strand, within IAI46_21865at 4653.291 kb on - strand, within IAI46_21865at 4653.366 kb on + strand, within IAI46_21865at 4653.366 kb on + strand, within IAI46_21865at 4653.367 kb on - strand, within IAI46_21865at 4653.367 kb on - strand, within IAI46_21865at 4653.367 kb on - strand, within IAI46_21865at 4653.367 kb on - strand, within IAI46_21865at 4653.388 kb on - strand, within IAI46_21865at 4653.454 kb on + strand, within IAI46_21865at 4653.454 kb on + strand, within IAI46_21865at 4653.455 kb on - strand, within IAI46_21865at 4653.455 kb on - strand, within IAI46_21865at 4653.455 kb on - strand, within IAI46_21865at 4653.455 kb on - strand, within IAI46_21865at 4653.477 kb on - strand, within IAI46_21865at 4653.491 kb on - strand, within IAI46_21865at 4653.531 kb on + strand, within IAI46_21865at 4653.532 kb on - strand, within IAI46_21865at 4653.554 kb on - strand, within IAI46_21865at 4653.554 kb on - strand, within IAI46_21865at 4653.561 kb on - strand, within IAI46_21865at 4653.660 kb on - strandat 4653.705 kb on - strandat 4653.806 kb on + strandat 4653.926 kb on + strand, within IAI46_21870at 4653.956 kb on + strand, within IAI46_21870at 4653.970 kb on - strand, within IAI46_21870at 4654.047 kb on - strand, within IAI46_21870at 4654.047 kb on - strand, within IAI46_21870at 4654.059 kb on - strand, within IAI46_21870at 4654.088 kb on - strand, within IAI46_21870at 4654.091 kb on + strand, within IAI46_21870at 4654.109 kb on + strand, within IAI46_21870at 4654.110 kb on - strand, within IAI46_21870at 4654.142 kb on + strand, within IAI46_21870at 4654.142 kb on + strand, within IAI46_21870at 4654.146 kb on + strand, within IAI46_21870at 4654.153 kb on + strand, within IAI46_21870at 4654.170 kb on - strand, within IAI46_21870at 4654.178 kb on - strand, within IAI46_21870at 4654.267 kb on + strand, within IAI46_21870at 4654.267 kb on + strand, within IAI46_21870at 4654.357 kb on + strand, within IAI46_21870at 4654.357 kb on + strand, within IAI46_21870at 4654.358 kb on - strand, within IAI46_21870at 4654.358 kb on - strand, within IAI46_21870at 4654.360 kb on + strand, within IAI46_21870at 4654.370 kb on + strand, within IAI46_21870at 4654.420 kb on + strand, within IAI46_21870at 4654.420 kb on + strand, within IAI46_21870at 4654.420 kb on + strand, within IAI46_21870at 4654.420 kb on + strand, within IAI46_21870at 4654.423 kb on + strand, within IAI46_21870at 4654.424 kb on - strand, within IAI46_21870at 4654.427 kb on + strand, within IAI46_21870at 4654.427 kb on + strand, within IAI46_21870at 4654.428 kb on - strand, within IAI46_21870at 4654.492 kb on + strand, within IAI46_21870at 4654.492 kb on + strand, within IAI46_21870at 4654.493 kb on - strand, within IAI46_21870at 4654.515 kb on + strand, within IAI46_21870at 4654.516 kb on - strand, within IAI46_21870at 4654.604 kb on + strand, within IAI46_21870at 4654.634 kb on + strand, within IAI46_21870

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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4,651,644 - +0.2
4,651,652 + +0.3
4,651,653 - -0.8
4,651,709 + -1.8
4,651,709 + -0.1
4,651,710 - +0.6
4,651,710 - +0.8
4,651,710 - +0.6
4,651,745 + -0.6
4,651,746 - -1.0
4,651,827 + IAI46_21860 0.18 +0.7
4,651,827 + IAI46_21860 0.18 +0.4
4,651,827 + IAI46_21860 0.18 +0.0
4,651,828 - IAI46_21860 0.18 -0.6
4,652,015 + IAI46_21860 0.57 +0.1
4,652,015 + IAI46_21860 0.57 +0.3
4,652,015 + IAI46_21860 0.57 -1.0
4,652,016 - IAI46_21860 0.57 -0.1
4,652,016 - IAI46_21860 0.57 +0.5
4,652,113 + IAI46_21860 0.77 -0.3
4,652,114 - IAI46_21860 0.77 +0.3
4,652,129 - IAI46_21860 0.80 -0.1
4,652,129 - IAI46_21860 0.80 +0.2
4,652,138 - IAI46_21860 0.82 +0.0
4,652,185 + +0.4
4,652,226 + -0.2
4,652,226 + -0.7
4,652,415 + -0.4
4,652,579 + -1.0
4,652,594 + +0.3
4,652,624 - +0.6
4,652,647 + +0.4
4,652,647 + +0.7
4,652,648 - -0.7
4,652,689 - -0.2
4,652,702 - -0.5
4,652,728 + IAI46_21865 0.12 +0.4
4,652,729 - IAI46_21865 0.12 -0.5
4,652,729 - IAI46_21865 0.12 +1.4
4,652,732 + IAI46_21865 0.12 +0.4
4,652,780 - IAI46_21865 0.17 +0.2
4,652,796 - IAI46_21865 0.18 +1.4
4,652,810 + IAI46_21865 0.19 +0.0
4,652,811 - IAI46_21865 0.19 -0.3
4,652,837 + IAI46_21865 0.22 +0.5
4,652,838 - IAI46_21865 0.22 +0.0
4,652,961 + IAI46_21865 0.33 +0.8
4,652,987 + IAI46_21865 0.35 -0.6
4,653,003 - IAI46_21865 0.37 +0.8
4,653,016 + IAI46_21865 0.38 -0.7
4,653,017 - IAI46_21865 0.38 -0.4
4,653,017 - IAI46_21865 0.38 +0.5
4,653,017 - IAI46_21865 0.38 -0.1
4,653,159 - IAI46_21865 0.51 -0.1
4,653,182 - IAI46_21865 0.53 +0.1
4,653,182 - IAI46_21865 0.53 -1.9
4,653,288 + IAI46_21865 0.63 +0.3
4,653,288 + IAI46_21865 0.63 -0.8
4,653,289 - IAI46_21865 0.63 -0.0
4,653,290 + IAI46_21865 0.63 +0.4
4,653,290 + IAI46_21865 0.63 -0.1
4,653,291 - IAI46_21865 0.63 +0.5
4,653,291 - IAI46_21865 0.63 -0.0
4,653,291 - IAI46_21865 0.63 -0.4
4,653,366 + IAI46_21865 0.70 +0.0
4,653,366 + IAI46_21865 0.70 +0.1
4,653,367 - IAI46_21865 0.70 +0.4
4,653,367 - IAI46_21865 0.70 -0.8
4,653,367 - IAI46_21865 0.70 +0.0
4,653,367 - IAI46_21865 0.70 +0.3
4,653,388 - IAI46_21865 0.72 +0.4
4,653,454 + IAI46_21865 0.78 -1.4
4,653,454 + IAI46_21865 0.78 -0.3
4,653,455 - IAI46_21865 0.78 +0.6
4,653,455 - IAI46_21865 0.78 +0.0
4,653,455 - IAI46_21865 0.78 +0.7
4,653,455 - IAI46_21865 0.78 +0.0
4,653,477 - IAI46_21865 0.80 +0.7
4,653,491 - IAI46_21865 0.81 +0.7
4,653,531 + IAI46_21865 0.85 +1.2
4,653,532 - IAI46_21865 0.85 -0.8
4,653,554 - IAI46_21865 0.87 +0.7
4,653,554 - IAI46_21865 0.87 +0.6
4,653,561 - IAI46_21865 0.88 +0.0
4,653,660 - +0.0
4,653,705 - -0.3
4,653,806 + +0.3
4,653,926 + IAI46_21870 0.19 -0.3
4,653,956 + IAI46_21870 0.21 -1.1
4,653,970 - IAI46_21870 0.23 +0.1
4,654,047 - IAI46_21870 0.30 -1.0
4,654,047 - IAI46_21870 0.30 -0.3
4,654,059 - IAI46_21870 0.31 -0.4
4,654,088 - IAI46_21870 0.34 -0.6
4,654,091 + IAI46_21870 0.34 -0.6
4,654,109 + IAI46_21870 0.36 -0.3
4,654,110 - IAI46_21870 0.36 -0.8
4,654,142 + IAI46_21870 0.39 +0.0
4,654,142 + IAI46_21870 0.39 -0.1
4,654,146 + IAI46_21870 0.39 +0.4
4,654,153 + IAI46_21870 0.40 -0.0
4,654,170 - IAI46_21870 0.41 +0.4
4,654,178 - IAI46_21870 0.42 +0.2
4,654,267 + IAI46_21870 0.50 +0.0
4,654,267 + IAI46_21870 0.50 +0.4
4,654,357 + IAI46_21870 0.59 -1.1
4,654,357 + IAI46_21870 0.59 +0.2
4,654,358 - IAI46_21870 0.59 -0.8
4,654,358 - IAI46_21870 0.59 +0.2
4,654,360 + IAI46_21870 0.59 -0.0
4,654,370 + IAI46_21870 0.60 +0.2
4,654,420 + IAI46_21870 0.64 +1.8
4,654,420 + IAI46_21870 0.64 -0.2
4,654,420 + IAI46_21870 0.64 -0.2
4,654,420 + IAI46_21870 0.64 +0.5
4,654,423 + IAI46_21870 0.65 +0.2
4,654,424 - IAI46_21870 0.65 +0.2
4,654,427 + IAI46_21870 0.65 +0.1
4,654,427 + IAI46_21870 0.65 +1.0
4,654,428 - IAI46_21870 0.65 -1.3
4,654,492 + IAI46_21870 0.71 +0.1
4,654,492 + IAI46_21870 0.71 +0.4
4,654,493 - IAI46_21870 0.71 -0.6
4,654,515 + IAI46_21870 0.73 -0.1
4,654,516 - IAI46_21870 0.73 -0.5
4,654,604 + IAI46_21870 0.82 +0.3
4,654,634 + IAI46_21870 0.84 -0.4

Or see this region's nucleotide sequence