Strain Fitness in Serratia liquefaciens MT49 around IAI46_19715

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19700 and IAI46_19705 overlap by 4 nucleotidesIAI46_19705 and IAI46_19710 overlap by 4 nucleotidesIAI46_19710 and IAI46_19715 are separated by 12 nucleotidesIAI46_19715 and IAI46_19720 are separated by 402 nucleotides IAI46_19700: IAI46_19700 - ash family protein, at 4,159,151 to 4,159,696 _19700 IAI46_19705: IAI46_19705 - hypothetical protein, at 4,159,693 to 4,159,956 _19705 IAI46_19710: IAI46_19710 - DUF5375 family protein, at 4,159,953 to 4,160,291 _19710 IAI46_19715: IAI46_19715 - toprim domain-containing protein, at 4,160,304 to 4,162,637 _19715 IAI46_19720: IAI46_19720 - hypothetical protein, at 4,163,040 to 4,163,387 _19720 Position (kb) 4160 4161 4162 4163Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4159.344 kb on + strand, within IAI46_19700at 4159.344 kb on + strand, within IAI46_19700at 4159.344 kb on + strand, within IAI46_19700at 4159.345 kb on - strand, within IAI46_19700at 4159.345 kb on - strand, within IAI46_19700at 4159.345 kb on - strand, within IAI46_19700at 4159.349 kb on + strand, within IAI46_19700at 4159.349 kb on + strand, within IAI46_19700at 4159.349 kb on + strand, within IAI46_19700at 4159.350 kb on - strand, within IAI46_19700at 4159.427 kb on - strand, within IAI46_19700at 4159.450 kb on + strand, within IAI46_19700at 4159.457 kb on - strand, within IAI46_19700at 4159.471 kb on + strand, within IAI46_19700at 4159.471 kb on + strand, within IAI46_19700at 4159.471 kb on + strand, within IAI46_19700at 4159.485 kb on - strand, within IAI46_19700at 4159.510 kb on + strand, within IAI46_19700at 4159.534 kb on + strand, within IAI46_19700at 4159.698 kb on + strandat 4159.699 kb on - strandat 4159.738 kb on - strand, within IAI46_19705at 4159.871 kb on + strand, within IAI46_19705at 4159.878 kb on - strand, within IAI46_19705at 4159.976 kb on - strandat 4160.025 kb on + strand, within IAI46_19710at 4160.025 kb on + strand, within IAI46_19710at 4160.025 kb on + strand, within IAI46_19710at 4160.112 kb on + strand, within IAI46_19710at 4160.112 kb on + strand, within IAI46_19710at 4160.113 kb on - strand, within IAI46_19710at 4160.384 kb on + strandat 4160.450 kb on + strandat 4160.592 kb on - strand, within IAI46_19715at 4160.592 kb on - strand, within IAI46_19715at 4160.592 kb on - strand, within IAI46_19715at 4160.705 kb on + strand, within IAI46_19715at 4160.705 kb on + strand, within IAI46_19715at 4160.706 kb on - strand, within IAI46_19715at 4160.706 kb on - strand, within IAI46_19715at 4160.706 kb on - strand, within IAI46_19715at 4160.709 kb on + strand, within IAI46_19715at 4160.709 kb on + strand, within IAI46_19715at 4160.710 kb on - strand, within IAI46_19715at 4160.710 kb on - strand, within IAI46_19715at 4160.710 kb on - strand, within IAI46_19715at 4160.788 kb on - strand, within IAI46_19715at 4160.852 kb on - strand, within IAI46_19715at 4160.852 kb on - strand, within IAI46_19715at 4160.930 kb on + strand, within IAI46_19715at 4160.939 kb on + strand, within IAI46_19715at 4160.939 kb on + strand, within IAI46_19715at 4161.194 kb on - strand, within IAI46_19715at 4161.194 kb on - strand, within IAI46_19715at 4161.194 kb on - strand, within IAI46_19715at 4161.195 kb on + strand, within IAI46_19715at 4161.195 kb on + strand, within IAI46_19715at 4161.195 kb on + strand, within IAI46_19715at 4161.196 kb on - strand, within IAI46_19715at 4161.325 kb on + strand, within IAI46_19715at 4161.339 kb on + strand, within IAI46_19715at 4161.339 kb on + strand, within IAI46_19715at 4161.340 kb on - strand, within IAI46_19715at 4161.495 kb on - strand, within IAI46_19715at 4161.495 kb on - strand, within IAI46_19715at 4161.572 kb on - strand, within IAI46_19715at 4161.881 kb on + strand, within IAI46_19715at 4161.881 kb on + strand, within IAI46_19715at 4161.882 kb on - strand, within IAI46_19715at 4162.021 kb on + strand, within IAI46_19715at 4162.021 kb on + strand, within IAI46_19715at 4162.022 kb on - strand, within IAI46_19715at 4162.022 kb on - strand, within IAI46_19715at 4162.022 kb on - strand, within IAI46_19715at 4162.025 kb on + strand, within IAI46_19715at 4162.025 kb on + strand, within IAI46_19715at 4162.025 kb on + strand, within IAI46_19715at 4162.025 kb on + strand, within IAI46_19715at 4162.026 kb on - strand, within IAI46_19715at 4162.026 kb on - strand, within IAI46_19715at 4162.026 kb on - strand, within IAI46_19715at 4162.027 kb on + strand, within IAI46_19715at 4162.028 kb on - strand, within IAI46_19715at 4162.050 kb on + strand, within IAI46_19715at 4162.051 kb on - strand, within IAI46_19715at 4162.089 kb on - strand, within IAI46_19715at 4162.193 kb on - strand, within IAI46_19715at 4162.193 kb on - strand, within IAI46_19715at 4162.274 kb on - strand, within IAI46_19715at 4162.353 kb on + strand, within IAI46_19715at 4162.386 kb on + strand, within IAI46_19715at 4162.386 kb on + strand, within IAI46_19715at 4162.387 kb on - strand, within IAI46_19715at 4162.387 kb on - strand, within IAI46_19715at 4162.387 kb on - strand, within IAI46_19715at 4162.387 kb on - strand, within IAI46_19715at 4162.387 kb on - strand, within IAI46_19715at 4162.429 kb on - strandat 4162.429 kb on - strandat 4162.429 kb on - strandat 4162.429 kb on - strandat 4162.434 kb on + strandat 4162.444 kb on - strandat 4162.444 kb on - strandat 4162.444 kb on - strandat 4162.444 kb on - strandat 4162.452 kb on + strandat 4162.452 kb on + strandat 4162.453 kb on - strandat 4162.453 kb on - strandat 4162.476 kb on + strandat 4162.537 kb on + strandat 4162.723 kb on + strandat 4162.723 kb on + strandat 4162.723 kb on + strandat 4162.723 kb on + strandat 4162.724 kb on - strandat 4162.724 kb on - strandat 4162.724 kb on - strandat 4162.725 kb on + strandat 4162.725 kb on + strandat 4162.725 kb on + strandat 4162.726 kb on - strandat 4162.726 kb on - strandat 4162.737 kb on - strandat 4162.748 kb on - strandat 4162.781 kb on + strandat 4162.782 kb on - strandat 4162.782 kb on - strandat 4162.816 kb on - strandat 4162.850 kb on - strandat 4162.871 kb on - strandat 4162.915 kb on - strandat 4163.003 kb on - strandat 4163.107 kb on - strand, within IAI46_19720at 4163.155 kb on - strand, within IAI46_19720at 4163.180 kb on + strand, within IAI46_19720at 4163.181 kb on - strand, within IAI46_19720at 4163.183 kb on + strand, within IAI46_19720at 4163.183 kb on + strand, within IAI46_19720at 4163.183 kb on + strand, within IAI46_19720at 4163.238 kb on - strand, within IAI46_19720at 4163.238 kb on - strand, within IAI46_19720at 4163.318 kb on - strand, within IAI46_19720at 4163.318 kb on - strand, within IAI46_19720at 4163.339 kb on + strand, within IAI46_19720at 4163.340 kb on - strand, within IAI46_19720at 4163.413 kb on + strandat 4163.413 kb on + strandat 4163.414 kb on - strandat 4163.414 kb on - strandat 4163.429 kb on + strandat 4163.432 kb on + strandat 4163.433 kb on - strandat 4163.433 kb on - strandat 4163.433 kb on - strandat 4163.455 kb on + strandat 4163.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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4,159,344 + IAI46_19700 0.35 +0.1
4,159,344 + IAI46_19700 0.35 -0.2
4,159,344 + IAI46_19700 0.35 -0.8
4,159,345 - IAI46_19700 0.36 +0.2
4,159,345 - IAI46_19700 0.36 +0.2
4,159,345 - IAI46_19700 0.36 +0.9
4,159,349 + IAI46_19700 0.36 -0.1
4,159,349 + IAI46_19700 0.36 +0.9
4,159,349 + IAI46_19700 0.36 +0.5
4,159,350 - IAI46_19700 0.36 -0.4
4,159,427 - IAI46_19700 0.51 +0.2
4,159,450 + IAI46_19700 0.55 +0.4
4,159,457 - IAI46_19700 0.56 +0.2
4,159,471 + IAI46_19700 0.59 +0.7
4,159,471 + IAI46_19700 0.59 +0.3
4,159,471 + IAI46_19700 0.59 +0.2
4,159,485 - IAI46_19700 0.61 -0.7
4,159,510 + IAI46_19700 0.66 +0.4
4,159,534 + IAI46_19700 0.70 +1.0
4,159,698 + +1.9
4,159,699 - +0.2
4,159,738 - IAI46_19705 0.17 +0.5
4,159,871 + IAI46_19705 0.67 -0.3
4,159,878 - IAI46_19705 0.70 +0.1
4,159,976 - +0.1
4,160,025 + IAI46_19710 0.21 -1.1
4,160,025 + IAI46_19710 0.21 -0.0
4,160,025 + IAI46_19710 0.21 -0.2
4,160,112 + IAI46_19710 0.47 +0.3
4,160,112 + IAI46_19710 0.47 +0.6
4,160,113 - IAI46_19710 0.47 -0.6
4,160,384 + +0.3
4,160,450 + +0.7
4,160,592 - IAI46_19715 0.12 +1.9
4,160,592 - IAI46_19715 0.12 +1.9
4,160,592 - IAI46_19715 0.12 +0.5
4,160,705 + IAI46_19715 0.17 +0.3
4,160,705 + IAI46_19715 0.17 +0.2
4,160,706 - IAI46_19715 0.17 +0.8
4,160,706 - IAI46_19715 0.17 +0.5
4,160,706 - IAI46_19715 0.17 +1.1
4,160,709 + IAI46_19715 0.17 +0.8
4,160,709 + IAI46_19715 0.17 +0.5
4,160,710 - IAI46_19715 0.17 +0.1
4,160,710 - IAI46_19715 0.17 +0.3
4,160,710 - IAI46_19715 0.17 -0.1
4,160,788 - IAI46_19715 0.21 +1.6
4,160,852 - IAI46_19715 0.23 +1.0
4,160,852 - IAI46_19715 0.23 -1.1
4,160,930 + IAI46_19715 0.27 +0.4
4,160,939 + IAI46_19715 0.27 -0.6
4,160,939 + IAI46_19715 0.27 +0.5
4,161,194 - IAI46_19715 0.38 -0.9
4,161,194 - IAI46_19715 0.38 -0.2
4,161,194 - IAI46_19715 0.38 +1.2
4,161,195 + IAI46_19715 0.38 +0.2
4,161,195 + IAI46_19715 0.38 -0.7
4,161,195 + IAI46_19715 0.38 +0.4
4,161,196 - IAI46_19715 0.38 +1.6
4,161,325 + IAI46_19715 0.44 +0.4
4,161,339 + IAI46_19715 0.44 +1.1
4,161,339 + IAI46_19715 0.44 +0.1
4,161,340 - IAI46_19715 0.44 +1.1
4,161,495 - IAI46_19715 0.51 -0.4
4,161,495 - IAI46_19715 0.51 +0.6
4,161,572 - IAI46_19715 0.54 +0.0
4,161,881 + IAI46_19715 0.68 +0.1
4,161,881 + IAI46_19715 0.68 +0.3
4,161,882 - IAI46_19715 0.68 -0.1
4,162,021 + IAI46_19715 0.74 +0.2
4,162,021 + IAI46_19715 0.74 +0.3
4,162,022 - IAI46_19715 0.74 -1.4
4,162,022 - IAI46_19715 0.74 +0.5
4,162,022 - IAI46_19715 0.74 +0.2
4,162,025 + IAI46_19715 0.74 +0.6
4,162,025 + IAI46_19715 0.74 -0.2
4,162,025 + IAI46_19715 0.74 +0.2
4,162,025 + IAI46_19715 0.74 -0.4
4,162,026 - IAI46_19715 0.74 -0.6
4,162,026 - IAI46_19715 0.74 +1.9
4,162,026 - IAI46_19715 0.74 +0.2
4,162,027 + IAI46_19715 0.74 +0.8
4,162,028 - IAI46_19715 0.74 +0.4
4,162,050 + IAI46_19715 0.75 +0.1
4,162,051 - IAI46_19715 0.75 +0.2
4,162,089 - IAI46_19715 0.76 -1.5
4,162,193 - IAI46_19715 0.81 -0.3
4,162,193 - IAI46_19715 0.81 +0.3
4,162,274 - IAI46_19715 0.84 +0.4
4,162,353 + IAI46_19715 0.88 +0.5
4,162,386 + IAI46_19715 0.89 -0.6
4,162,386 + IAI46_19715 0.89 +1.0
4,162,387 - IAI46_19715 0.89 +0.5
4,162,387 - IAI46_19715 0.89 +0.0
4,162,387 - IAI46_19715 0.89 +0.7
4,162,387 - IAI46_19715 0.89 -0.1
4,162,387 - IAI46_19715 0.89 -0.1
4,162,429 - +0.9
4,162,429 - +0.0
4,162,429 - +0.5
4,162,429 - -0.5
4,162,434 + -0.6
4,162,444 - +0.2
4,162,444 - +0.7
4,162,444 - -0.3
4,162,444 - -1.1
4,162,452 + +0.6
4,162,452 + -0.0
4,162,453 - +0.3
4,162,453 - -0.9
4,162,476 + +1.6
4,162,537 + -0.4
4,162,723 + +0.4
4,162,723 + -0.4
4,162,723 + -0.6
4,162,723 + +0.0
4,162,724 - +1.2
4,162,724 - -0.1
4,162,724 - +0.6
4,162,725 + +0.6
4,162,725 + -0.8
4,162,725 + +3.0
4,162,726 - -0.1
4,162,726 - -0.5
4,162,737 - -0.6
4,162,748 - +0.9
4,162,781 + -0.2
4,162,782 - -1.9
4,162,782 - -0.4
4,162,816 - +0.4
4,162,850 - -1.7
4,162,871 - -0.3
4,162,915 - -0.3
4,163,003 - -0.5
4,163,107 - IAI46_19720 0.19 -1.0
4,163,155 - IAI46_19720 0.33 +0.3
4,163,180 + IAI46_19720 0.40 +0.1
4,163,181 - IAI46_19720 0.41 +0.1
4,163,183 + IAI46_19720 0.41 +0.6
4,163,183 + IAI46_19720 0.41 -0.2
4,163,183 + IAI46_19720 0.41 +0.9
4,163,238 - IAI46_19720 0.57 -0.3
4,163,238 - IAI46_19720 0.57 -0.3
4,163,318 - IAI46_19720 0.80 -1.0
4,163,318 - IAI46_19720 0.80 -0.2
4,163,339 + IAI46_19720 0.86 +0.2
4,163,340 - IAI46_19720 0.86 +0.3
4,163,413 + -1.0
4,163,413 + -0.2
4,163,414 - -0.2
4,163,414 - +0.3
4,163,429 + -2.2
4,163,432 + -0.2
4,163,433 - -0.1
4,163,433 - -0.5
4,163,433 - +0.6
4,163,455 + +0.9
4,163,494 - +0.1

Or see this region's nucleotide sequence