Strain Fitness in Serratia liquefaciens MT49 around IAI46_18340

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18335 and IAI46_18340 are separated by 134 nucleotidesIAI46_18340 and IAI46_18345 overlap by 1 nucleotides IAI46_18335: IAI46_18335 - enterobactin transporter EntS, at 3,855,768 to 3,857,036 _18335 IAI46_18340: IAI46_18340 - Fe(3+)-siderophore ABC transporter permease, at 3,857,171 to 3,858,244 _18340 IAI46_18345: IAI46_18345 - iron-enterobactin ABC transporter permease, at 3,858,244 to 3,859,269 _18345 Position (kb) 3857 3858 3859Strain fitness (log2 ratio) -2 -1 0 1at 3856.208 kb on + strand, within IAI46_18335at 3856.209 kb on - strand, within IAI46_18335at 3856.246 kb on + strand, within IAI46_18335at 3856.246 kb on + strand, within IAI46_18335at 3856.250 kb on + strand, within IAI46_18335at 3856.250 kb on + strand, within IAI46_18335at 3856.250 kb on + strand, within IAI46_18335at 3856.251 kb on - strand, within IAI46_18335at 3856.502 kb on - strand, within IAI46_18335at 3856.722 kb on + strand, within IAI46_18335at 3856.734 kb on + strand, within IAI46_18335at 3856.757 kb on + strand, within IAI46_18335at 3856.757 kb on + strand, within IAI46_18335at 3856.815 kb on + strand, within IAI46_18335at 3856.816 kb on - strand, within IAI46_18335at 3856.997 kb on + strandat 3856.997 kb on + strandat 3856.997 kb on + strandat 3856.998 kb on - strandat 3857.022 kb on - strandat 3857.030 kb on + strandat 3857.030 kb on + strandat 3857.030 kb on + strandat 3857.030 kb on + strandat 3857.030 kb on + strandat 3857.030 kb on + strandat 3857.031 kb on - strandat 3857.038 kb on - strandat 3857.038 kb on - strandat 3857.055 kb on + strandat 3857.056 kb on - strandat 3857.085 kb on + strandat 3857.085 kb on + strandat 3857.103 kb on + strandat 3857.108 kb on + strandat 3857.108 kb on + strandat 3857.109 kb on - strandat 3857.170 kb on + strandat 3857.171 kb on - strandat 3857.175 kb on + strandat 3857.182 kb on + strandat 3857.591 kb on + strand, within IAI46_18340at 3857.591 kb on + strand, within IAI46_18340at 3857.810 kb on - strand, within IAI46_18340at 3858.094 kb on - strand, within IAI46_18340at 3858.243 kb on - strandat 3858.470 kb on + strand, within IAI46_18345at 3858.535 kb on - strand, within IAI46_18345at 3858.590 kb on + strand, within IAI46_18345at 3858.602 kb on + strand, within IAI46_18345at 3858.603 kb on - strand, within IAI46_18345at 3858.603 kb on - strand, within IAI46_18345at 3858.680 kb on - strand, within IAI46_18345at 3859.183 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,856,208 + IAI46_18335 0.35 +0.2
3,856,209 - IAI46_18335 0.35 +0.3
3,856,246 + IAI46_18335 0.38 -0.6
3,856,246 + IAI46_18335 0.38 -1.1
3,856,250 + IAI46_18335 0.38 +0.6
3,856,250 + IAI46_18335 0.38 -0.2
3,856,250 + IAI46_18335 0.38 -0.5
3,856,251 - IAI46_18335 0.38 +0.8
3,856,502 - IAI46_18335 0.58 -0.3
3,856,722 + IAI46_18335 0.75 +0.4
3,856,734 + IAI46_18335 0.76 +0.5
3,856,757 + IAI46_18335 0.78 -0.3
3,856,757 + IAI46_18335 0.78 +0.7
3,856,815 + IAI46_18335 0.83 -0.1
3,856,816 - IAI46_18335 0.83 +0.4
3,856,997 + -0.7
3,856,997 + -1.2
3,856,997 + +0.4
3,856,998 - -0.1
3,857,022 - +0.2
3,857,030 + -0.5
3,857,030 + +0.2
3,857,030 + -0.2
3,857,030 + +0.8
3,857,030 + -0.1
3,857,030 + +0.1
3,857,031 - +0.2
3,857,038 - +1.0
3,857,038 - +0.8
3,857,055 + -0.6
3,857,056 - +0.4
3,857,085 + -0.6
3,857,085 + -0.4
3,857,103 + +0.1
3,857,108 + +0.7
3,857,108 + +0.3
3,857,109 - -0.5
3,857,170 + -0.0
3,857,171 - -0.6
3,857,175 + +1.4
3,857,182 + -1.0
3,857,591 + IAI46_18340 0.39 -0.8
3,857,591 + IAI46_18340 0.39 +0.6
3,857,810 - IAI46_18340 0.59 -0.3
3,858,094 - IAI46_18340 0.86 -0.3
3,858,243 - -0.3
3,858,470 + IAI46_18345 0.22 -0.6
3,858,535 - IAI46_18345 0.28 -1.8
3,858,590 + IAI46_18345 0.34 -0.4
3,858,602 + IAI46_18345 0.35 -1.8
3,858,603 - IAI46_18345 0.35 +0.5
3,858,603 - IAI46_18345 0.35 +1.0
3,858,680 - IAI46_18345 0.42 +0.4
3,859,183 + -0.8

Or see this region's nucleotide sequence