Strain Fitness in Serratia liquefaciens MT49 around IAI46_17000

Experiment: Cobalt chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_16990 and IAI46_16995 overlap by 1 nucleotidesIAI46_16995 and IAI46_17000 overlap by 17 nucleotidesIAI46_17000 and IAI46_17005 overlap by 4 nucleotides IAI46_16990: IAI46_16990 - citrate lyase subunit alpha, at 3,560,502 to 3,562,007 _16990 IAI46_16995: IAI46_16995 - citrate (pro-3S)-lyase subunit beta, at 3,562,007 to 3,562,927 _16995 IAI46_17000: IAI46_17000 - citrate lyase acyl carrier protein, at 3,562,911 to 3,563,219 _17000 IAI46_17005: IAI46_17005 - [citrate (pro-3S)-lyase] ligase, at 3,563,216 to 3,564,289 _17005 Position (kb) 3562 3563 3564Strain fitness (log2 ratio) -3 -2 -1 0 1at 3561.953 kb on - strandat 3562.008 kb on + strandat 3562.009 kb on - strandat 3562.128 kb on - strand, within IAI46_16995at 3562.210 kb on - strand, within IAI46_16995at 3562.326 kb on + strand, within IAI46_16995at 3562.326 kb on + strand, within IAI46_16995at 3562.326 kb on + strand, within IAI46_16995at 3562.440 kb on + strand, within IAI46_16995at 3562.665 kb on - strand, within IAI46_16995at 3562.761 kb on + strand, within IAI46_16995at 3562.843 kb on + strandat 3562.844 kb on - strandat 3562.844 kb on - strandat 3562.912 kb on + strandat 3562.913 kb on - strandat 3562.947 kb on + strand, within IAI46_17000at 3562.948 kb on - strand, within IAI46_17000at 3562.948 kb on - strand, within IAI46_17000at 3563.053 kb on + strand, within IAI46_17000at 3563.295 kb on + strandat 3563.583 kb on + strand, within IAI46_17005at 3563.583 kb on + strand, within IAI46_17005at 3563.619 kb on + strand, within IAI46_17005at 3563.650 kb on - strand, within IAI46_17005at 3563.678 kb on - strand, within IAI46_17005at 3563.724 kb on + strand, within IAI46_17005at 3563.741 kb on - strand, within IAI46_17005at 3563.892 kb on + strand, within IAI46_17005at 3564.007 kb on + strand, within IAI46_17005at 3564.007 kb on + strand, within IAI46_17005at 3564.008 kb on - strand, within IAI46_17005at 3564.118 kb on + strand, within IAI46_17005at 3564.151 kb on + strand, within IAI46_17005at 3564.196 kb on + strandat 3564.208 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
remove
3,561,953 - -0.0
3,562,008 + -0.4
3,562,009 - -0.1
3,562,128 - IAI46_16995 0.13 -0.9
3,562,210 - IAI46_16995 0.22 -0.7
3,562,326 + IAI46_16995 0.35 +0.3
3,562,326 + IAI46_16995 0.35 -1.7
3,562,326 + IAI46_16995 0.35 +0.4
3,562,440 + IAI46_16995 0.47 +0.7
3,562,665 - IAI46_16995 0.71 -0.5
3,562,761 + IAI46_16995 0.82 +0.2
3,562,843 + -0.2
3,562,844 - -0.1
3,562,844 - +1.5
3,562,912 + -0.1
3,562,913 - -0.4
3,562,947 + IAI46_17000 0.12 -3.1
3,562,948 - IAI46_17000 0.12 +0.9
3,562,948 - IAI46_17000 0.12 -0.5
3,563,053 + IAI46_17000 0.46 -0.2
3,563,295 + -0.3
3,563,583 + IAI46_17005 0.34 -0.5
3,563,583 + IAI46_17005 0.34 -0.5
3,563,619 + IAI46_17005 0.38 -0.0
3,563,650 - IAI46_17005 0.40 +0.4
3,563,678 - IAI46_17005 0.43 -0.4
3,563,724 + IAI46_17005 0.47 +0.0
3,563,741 - IAI46_17005 0.49 -0.7
3,563,892 + IAI46_17005 0.63 -1.3
3,564,007 + IAI46_17005 0.74 -0.7
3,564,007 + IAI46_17005 0.74 +0.9
3,564,008 - IAI46_17005 0.74 -0.5
3,564,118 + IAI46_17005 0.84 +0.5
3,564,151 + IAI46_17005 0.87 -0.7
3,564,196 + -0.6
3,564,208 + +0.1

Or see this region's nucleotide sequence