Strain Fitness in Serratia liquefaciens MT49 around IAI46_15565

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15560 and IAI46_15565 are separated by 139 nucleotidesIAI46_15565 and IAI46_15570 overlap by 11 nucleotides IAI46_15560: IAI46_15560 - glycosyltransferase family 2 protein, at 3,260,614 to 3,261,519 _15560 IAI46_15565: IAI46_15565 - glycosyltransferase, at 3,261,659 to 3,262,507 _15565 IAI46_15570: IAI46_15570 - flippase, at 3,262,497 to 3,263,786 _15570 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -2 -1 0 1at 3260.823 kb on + strand, within IAI46_15560at 3260.824 kb on - strand, within IAI46_15560at 3260.825 kb on + strand, within IAI46_15560at 3260.846 kb on + strand, within IAI46_15560at 3260.997 kb on - strand, within IAI46_15560at 3261.003 kb on - strand, within IAI46_15560at 3261.117 kb on + strand, within IAI46_15560at 3261.220 kb on - strand, within IAI46_15560at 3261.222 kb on + strand, within IAI46_15560at 3261.224 kb on + strand, within IAI46_15560at 3261.225 kb on - strand, within IAI46_15560at 3261.232 kb on - strand, within IAI46_15560at 3261.315 kb on + strand, within IAI46_15560at 3261.375 kb on + strand, within IAI46_15560at 3261.461 kb on - strandat 3261.535 kb on + strandat 3261.660 kb on + strandat 3261.788 kb on + strand, within IAI46_15565at 3261.792 kb on + strand, within IAI46_15565at 3262.069 kb on + strand, within IAI46_15565at 3262.070 kb on - strand, within IAI46_15565at 3262.077 kb on + strand, within IAI46_15565at 3262.078 kb on - strand, within IAI46_15565at 3262.148 kb on - strand, within IAI46_15565at 3262.309 kb on + strand, within IAI46_15565at 3262.326 kb on + strand, within IAI46_15565at 3262.331 kb on - strand, within IAI46_15565at 3262.348 kb on - strand, within IAI46_15565at 3262.363 kb on - strand, within IAI46_15565at 3262.392 kb on + strand, within IAI46_15565at 3262.393 kb on - strand, within IAI46_15565at 3262.406 kb on - strand, within IAI46_15565at 3262.445 kb on + strandat 3262.455 kb on + strandat 3262.456 kb on - strandat 3262.475 kb on - strandat 3262.507 kb on + strandat 3262.602 kb on + strandat 3262.675 kb on - strand, within IAI46_15570at 3262.719 kb on + strand, within IAI46_15570at 3262.763 kb on - strand, within IAI46_15570at 3262.834 kb on + strand, within IAI46_15570at 3262.887 kb on + strand, within IAI46_15570at 3262.888 kb on - strand, within IAI46_15570at 3262.888 kb on - strand, within IAI46_15570at 3262.890 kb on + strand, within IAI46_15570at 3262.890 kb on + strand, within IAI46_15570at 3262.924 kb on + strand, within IAI46_15570at 3262.924 kb on + strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.925 kb on - strand, within IAI46_15570at 3262.995 kb on - strand, within IAI46_15570at 3263.078 kb on - strand, within IAI46_15570at 3263.081 kb on + strand, within IAI46_15570at 3263.108 kb on + strand, within IAI46_15570at 3263.109 kb on - strand, within IAI46_15570at 3263.110 kb on + strand, within IAI46_15570at 3263.110 kb on + strand, within IAI46_15570at 3263.111 kb on - strand, within IAI46_15570at 3263.272 kb on + strand, within IAI46_15570at 3263.273 kb on - strand, within IAI46_15570at 3263.273 kb on - strand, within IAI46_15570at 3263.396 kb on - strand, within IAI46_15570at 3263.408 kb on - strand, within IAI46_15570at 3263.428 kb on + strand, within IAI46_15570at 3263.429 kb on - strand, within IAI46_15570

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,260,823 + IAI46_15560 0.23 -0.2
3,260,824 - IAI46_15560 0.23 +0.6
3,260,825 + IAI46_15560 0.23 -1.4
3,260,846 + IAI46_15560 0.26 -0.5
3,260,997 - IAI46_15560 0.42 +0.6
3,261,003 - IAI46_15560 0.43 -0.3
3,261,117 + IAI46_15560 0.56 +0.5
3,261,220 - IAI46_15560 0.67 -0.7
3,261,222 + IAI46_15560 0.67 +0.3
3,261,224 + IAI46_15560 0.67 +0.1
3,261,225 - IAI46_15560 0.67 +0.3
3,261,232 - IAI46_15560 0.68 +0.0
3,261,315 + IAI46_15560 0.77 -2.1
3,261,375 + IAI46_15560 0.84 -0.4
3,261,461 - -0.1
3,261,535 + -0.9
3,261,660 + +0.6
3,261,788 + IAI46_15565 0.15 +0.2
3,261,792 + IAI46_15565 0.16 +0.0
3,262,069 + IAI46_15565 0.48 +0.6
3,262,070 - IAI46_15565 0.48 -1.5
3,262,077 + IAI46_15565 0.49 +0.5
3,262,078 - IAI46_15565 0.49 -1.0
3,262,148 - IAI46_15565 0.58 +0.8
3,262,309 + IAI46_15565 0.77 -1.3
3,262,326 + IAI46_15565 0.79 -1.2
3,262,331 - IAI46_15565 0.79 +1.4
3,262,348 - IAI46_15565 0.81 +0.0
3,262,363 - IAI46_15565 0.83 -0.5
3,262,392 + IAI46_15565 0.86 -1.2
3,262,393 - IAI46_15565 0.86 +0.2
3,262,406 - IAI46_15565 0.88 +0.0
3,262,445 + -0.8
3,262,455 + +0.4
3,262,456 - -1.0
3,262,475 - +0.8
3,262,507 + +0.4
3,262,602 + -0.0
3,262,675 - IAI46_15570 0.14 +0.7
3,262,719 + IAI46_15570 0.17 +0.5
3,262,763 - IAI46_15570 0.21 +0.4
3,262,834 + IAI46_15570 0.26 -0.4
3,262,887 + IAI46_15570 0.30 -0.3
3,262,888 - IAI46_15570 0.30 +0.1
3,262,888 - IAI46_15570 0.30 +0.4
3,262,890 + IAI46_15570 0.30 -0.0
3,262,890 + IAI46_15570 0.30 +0.4
3,262,924 + IAI46_15570 0.33 -0.7
3,262,924 + IAI46_15570 0.33 +1.1
3,262,925 - IAI46_15570 0.33 -0.6
3,262,925 - IAI46_15570 0.33 -0.4
3,262,925 - IAI46_15570 0.33 +0.8
3,262,925 - IAI46_15570 0.33 +1.2
3,262,925 - IAI46_15570 0.33 +0.9
3,262,995 - IAI46_15570 0.39 +1.4
3,263,078 - IAI46_15570 0.45 +0.5
3,263,081 + IAI46_15570 0.45 +0.7
3,263,108 + IAI46_15570 0.47 +0.2
3,263,109 - IAI46_15570 0.47 +0.6
3,263,110 + IAI46_15570 0.48 -0.3
3,263,110 + IAI46_15570 0.48 +0.8
3,263,111 - IAI46_15570 0.48 -0.6
3,263,272 + IAI46_15570 0.60 -0.3
3,263,273 - IAI46_15570 0.60 +0.5
3,263,273 - IAI46_15570 0.60 +0.7
3,263,396 - IAI46_15570 0.70 +1.7
3,263,408 - IAI46_15570 0.71 -0.1
3,263,428 + IAI46_15570 0.72 -0.2
3,263,429 - IAI46_15570 0.72 -0.4

Or see this region's nucleotide sequence