Strain Fitness in Serratia liquefaciens MT49 around IAI46_14300

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14290 and IAI46_14295 are separated by 45 nucleotidesIAI46_14295 and IAI46_14300 are separated by 18 nucleotidesIAI46_14300 and IAI46_14305 overlap by 4 nucleotides IAI46_14290: IAI46_14290 - exodeoxyribonuclease III, at 3,032,372 to 3,033,178 _14290 IAI46_14295: IAI46_14295 - pyrimidine (deoxy)nucleoside triphosphate diphosphatase, at 3,033,224 to 3,033,625 _14295 IAI46_14300: IAI46_14300 - YnjH family protein, at 3,033,644 to 3,033,937 _14300 IAI46_14305: IAI46_14305 - DNA topoisomerase III, at 3,033,934 to 3,035,859 _14305 Position (kb) 3033 3034Strain fitness (log2 ratio) -1 0 1at 3032.696 kb on + strand, within IAI46_14290at 3032.830 kb on + strand, within IAI46_14290at 3032.847 kb on - strand, within IAI46_14290at 3032.966 kb on + strand, within IAI46_14290at 3033.113 kb on + strandat 3033.434 kb on - strand, within IAI46_14295at 3033.434 kb on - strand, within IAI46_14295at 3033.460 kb on + strand, within IAI46_14295at 3033.465 kb on + strand, within IAI46_14295at 3033.465 kb on + strand, within IAI46_14295at 3033.596 kb on + strandat 3033.596 kb on + strandat 3033.597 kb on - strandat 3033.598 kb on + strandat 3033.609 kb on + strandat 3033.766 kb on - strand, within IAI46_14300at 3034.218 kb on + strand, within IAI46_14305at 3034.220 kb on + strand, within IAI46_14305at 3034.221 kb on - strand, within IAI46_14305at 3034.234 kb on - strand, within IAI46_14305at 3034.235 kb on + strand, within IAI46_14305at 3034.514 kb on - strand, within IAI46_14305at 3034.652 kb on + strand, within IAI46_14305at 3034.753 kb on - strand, within IAI46_14305

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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3,032,696 + IAI46_14290 0.40 -0.6
3,032,830 + IAI46_14290 0.57 +0.9
3,032,847 - IAI46_14290 0.59 -0.4
3,032,966 + IAI46_14290 0.74 +1.5
3,033,113 + -0.3
3,033,434 - IAI46_14295 0.52 -0.4
3,033,434 - IAI46_14295 0.52 -1.2
3,033,460 + IAI46_14295 0.59 +0.4
3,033,465 + IAI46_14295 0.60 -1.0
3,033,465 + IAI46_14295 0.60 -0.7
3,033,596 + +0.0
3,033,596 + +0.0
3,033,597 - +0.2
3,033,598 + -0.6
3,033,609 + -0.7
3,033,766 - IAI46_14300 0.41 +1.1
3,034,218 + IAI46_14305 0.15 -0.2
3,034,220 + IAI46_14305 0.15 +0.8
3,034,221 - IAI46_14305 0.15 -0.6
3,034,234 - IAI46_14305 0.16 +0.4
3,034,235 + IAI46_14305 0.16 +0.6
3,034,514 - IAI46_14305 0.30 -0.8
3,034,652 + IAI46_14305 0.37 +0.4
3,034,753 - IAI46_14305 0.43 +0.4

Or see this region's nucleotide sequence