Strain Fitness in Serratia liquefaciens MT49 around IAI46_13460

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13450 and IAI46_13455 are separated by 207 nucleotidesIAI46_13455 and IAI46_13460 are separated by 5 nucleotidesIAI46_13460 and IAI46_13465 are separated by 224 nucleotidesIAI46_13465 and IAI46_13470 are separated by 72 nucleotides IAI46_13450: IAI46_13450 - hypothetical protein, at 2,874,169 to 2,874,519 _13450 IAI46_13455: IAI46_13455 - murein tripeptide amidase MpaA, at 2,874,727 to 2,875,434 _13455 IAI46_13460: IAI46_13460 - L-Ala-D/L-Glu epimerase, at 2,875,440 to 2,876,411 _13460 IAI46_13465: IAI46_13465 - thiol peroxidase, at 2,876,636 to 2,877,139 _13465 IAI46_13470: IAI46_13470 - transcriptional regulator TyrR, at 2,877,212 to 2,878,783 _13470 Position (kb) 2875 2876 2877Strain fitness (log2 ratio) -2 -1 0 1 2at 2874.491 kb on + strandat 2874.491 kb on + strandat 2874.491 kb on + strandat 2874.492 kb on - strandat 2874.492 kb on - strandat 2874.492 kb on - strandat 2874.495 kb on + strandat 2874.502 kb on - strandat 2874.523 kb on - strandat 2874.523 kb on - strandat 2874.559 kb on + strandat 2874.560 kb on - strandat 2874.563 kb on - strandat 2874.564 kb on + strandat 2874.565 kb on - strandat 2874.565 kb on - strandat 2874.593 kb on + strandat 2874.594 kb on - strandat 2874.625 kb on - strandat 2874.645 kb on + strandat 2874.645 kb on + strandat 2874.646 kb on - strandat 2874.646 kb on - strandat 2874.675 kb on + strandat 2875.393 kb on + strandat 2876.071 kb on - strand, within IAI46_13460at 2876.071 kb on - strand, within IAI46_13460at 2876.276 kb on + strand, within IAI46_13460at 2876.508 kb on + strandat 2876.510 kb on + strandat 2876.558 kb on - strandat 2876.563 kb on + strandat 2876.574 kb on + strandat 2876.574 kb on + strandat 2876.575 kb on - strandat 2876.607 kb on + strandat 2876.608 kb on - strandat 2876.609 kb on + strandat 2876.620 kb on - strandat 2877.137 kb on + strandat 2877.138 kb on - strandat 2877.138 kb on - strandat 2877.145 kb on + strandat 2877.145 kb on + strandat 2877.146 kb on - strandat 2877.256 kb on - strandat 2877.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,874,491 + -1.0
2,874,491 + +0.6
2,874,491 + +0.4
2,874,492 - +0.6
2,874,492 - +1.9
2,874,492 - +0.8
2,874,495 + -0.2
2,874,502 - +0.2
2,874,523 - -2.4
2,874,523 - +1.1
2,874,559 + +1.0
2,874,560 - +0.7
2,874,563 - +0.4
2,874,564 + -0.1
2,874,565 - +0.3
2,874,565 - -0.5
2,874,593 + -0.0
2,874,594 - +0.6
2,874,625 - -0.5
2,874,645 + -0.5
2,874,645 + +1.3
2,874,646 - -0.3
2,874,646 - -0.5
2,874,675 + -1.5
2,875,393 + -0.9
2,876,071 - IAI46_13460 0.65 -0.4
2,876,071 - IAI46_13460 0.65 +0.3
2,876,276 + IAI46_13460 0.86 +1.6
2,876,508 + -0.1
2,876,510 + +0.9
2,876,558 - -0.6
2,876,563 + -1.4
2,876,574 + +0.4
2,876,574 + +0.1
2,876,575 - +0.5
2,876,607 + -0.6
2,876,608 - +0.2
2,876,609 + +1.5
2,876,620 - +0.9
2,877,137 + -0.5
2,877,138 - -0.3
2,877,138 - +0.1
2,877,145 + +0.3
2,877,145 + +0.9
2,877,146 - -0.3
2,877,256 - -0.0
2,877,256 - +0.5

Or see this region's nucleotide sequence