Strain Fitness in Serratia liquefaciens MT49 around IAI46_13140

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13135 and IAI46_13140 are separated by 26 nucleotidesIAI46_13140 and IAI46_13145 are separated by 163 nucleotides IAI46_13135: IAI46_13135 - inorganic phosphate transporter, at 2,801,621 to 2,803,231 _13135 IAI46_13140: IAI46_13140 - polyphosphate kinase 2, at 2,803,258 to 2,804,172 _13140 IAI46_13145: IAI46_13145 - D-alanyl-D-alanine endopeptidase, at 2,804,336 to 2,805,169 _13145 Position (kb) 2803 2804 2805Strain fitness (log2 ratio) -1 0 1at 2802.276 kb on + strand, within IAI46_13135at 2802.332 kb on + strand, within IAI46_13135at 2802.333 kb on - strand, within IAI46_13135at 2802.333 kb on - strand, within IAI46_13135at 2802.333 kb on - strand, within IAI46_13135at 2802.488 kb on + strand, within IAI46_13135at 2802.489 kb on - strand, within IAI46_13135at 2802.621 kb on - strand, within IAI46_13135at 2802.757 kb on + strand, within IAI46_13135at 2802.757 kb on + strand, within IAI46_13135at 2802.758 kb on - strand, within IAI46_13135at 2802.761 kb on + strand, within IAI46_13135at 2802.781 kb on + strand, within IAI46_13135at 2802.878 kb on - strand, within IAI46_13135at 2802.993 kb on - strand, within IAI46_13135at 2803.257 kb on + strandat 2803.258 kb on - strandat 2803.258 kb on - strandat 2803.264 kb on - strandat 2803.319 kb on - strandat 2803.504 kb on + strand, within IAI46_13140at 2803.505 kb on - strand, within IAI46_13140at 2803.617 kb on + strand, within IAI46_13140at 2803.627 kb on + strand, within IAI46_13140at 2803.639 kb on + strand, within IAI46_13140at 2803.640 kb on - strand, within IAI46_13140at 2803.640 kb on - strand, within IAI46_13140at 2803.642 kb on - strand, within IAI46_13140at 2803.817 kb on - strand, within IAI46_13140at 2804.052 kb on + strand, within IAI46_13140at 2804.053 kb on - strand, within IAI46_13140at 2804.122 kb on + strandat 2804.148 kb on + strandat 2804.148 kb on + strandat 2804.149 kb on - strandat 2804.149 kb on - strandat 2804.149 kb on - strandat 2804.149 kb on - strandat 2804.264 kb on - strandat 2804.323 kb on - strandat 2804.323 kb on - strandat 2804.891 kb on + strand, within IAI46_13145

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,802,276 + IAI46_13135 0.41 -0.3
2,802,332 + IAI46_13135 0.44 +0.9
2,802,333 - IAI46_13135 0.44 +0.0
2,802,333 - IAI46_13135 0.44 -0.2
2,802,333 - IAI46_13135 0.44 +0.0
2,802,488 + IAI46_13135 0.54 -1.2
2,802,489 - IAI46_13135 0.54 -0.1
2,802,621 - IAI46_13135 0.62 +0.7
2,802,757 + IAI46_13135 0.71 +0.9
2,802,757 + IAI46_13135 0.71 +0.0
2,802,758 - IAI46_13135 0.71 -0.7
2,802,761 + IAI46_13135 0.71 +0.9
2,802,781 + IAI46_13135 0.72 +0.3
2,802,878 - IAI46_13135 0.78 +0.9
2,802,993 - IAI46_13135 0.85 +0.6
2,803,257 + +0.1
2,803,258 - -0.2
2,803,258 - +1.0
2,803,264 - +0.3
2,803,319 - +0.1
2,803,504 + IAI46_13140 0.27 -0.0
2,803,505 - IAI46_13140 0.27 -1.5
2,803,617 + IAI46_13140 0.39 +0.6
2,803,627 + IAI46_13140 0.40 -0.7
2,803,639 + IAI46_13140 0.42 +0.3
2,803,640 - IAI46_13140 0.42 -0.3
2,803,640 - IAI46_13140 0.42 -0.2
2,803,642 - IAI46_13140 0.42 +0.1
2,803,817 - IAI46_13140 0.61 +0.5
2,804,052 + IAI46_13140 0.87 +0.8
2,804,053 - IAI46_13140 0.87 -0.0
2,804,122 + -0.0
2,804,148 + -0.9
2,804,148 + +0.1
2,804,149 - +0.7
2,804,149 - -0.4
2,804,149 - +0.8
2,804,149 - +0.4
2,804,264 - -0.3
2,804,323 - -0.8
2,804,323 - -0.9
2,804,891 + IAI46_13145 0.67 -0.7

Or see this region's nucleotide sequence