Strain Fitness in Serratia liquefaciens MT49 around IAI46_12265

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12260 and IAI46_12265 are separated by 146 nucleotidesIAI46_12265 and IAI46_12270 are separated by 27 nucleotidesIAI46_12270 and IAI46_12275 are separated by 55 nucleotides IAI46_12260: IAI46_12260 - LysR family transcriptional regulator, at 2,601,079 to 2,602,017 _12260 IAI46_12265: IAI46_12265 - amidinotransferase, at 2,602,164 to 2,602,925 _12265 IAI46_12270: IAI46_12270 - ABC transporter substrate-binding protein, at 2,602,953 to 2,603,726 _12270 IAI46_12275: IAI46_12275 - ABC transporter permease subunit, at 2,603,782 to 2,604,471 _12275 Position (kb) 2602 2603Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2601.267 kb on + strand, within IAI46_12260at 2601.268 kb on - strand, within IAI46_12260at 2601.383 kb on + strand, within IAI46_12260at 2601.422 kb on + strand, within IAI46_12260at 2601.614 kb on + strand, within IAI46_12260at 2601.617 kb on + strand, within IAI46_12260at 2601.682 kb on - strand, within IAI46_12260at 2601.688 kb on + strand, within IAI46_12260at 2601.931 kb on + strandat 2601.932 kb on - strandat 2601.952 kb on - strandat 2601.988 kb on - strandat 2602.025 kb on + strandat 2602.055 kb on - strandat 2602.057 kb on - strandat 2602.057 kb on - strandat 2602.069 kb on + strandat 2602.172 kb on + strandat 2602.224 kb on - strandat 2602.278 kb on + strand, within IAI46_12265at 2602.278 kb on + strand, within IAI46_12265at 2602.278 kb on + strand, within IAI46_12265at 2602.307 kb on - strand, within IAI46_12265at 2602.479 kb on - strand, within IAI46_12265at 2602.479 kb on - strand, within IAI46_12265at 2602.680 kb on - strand, within IAI46_12265at 2602.761 kb on + strand, within IAI46_12265at 2602.773 kb on - strand, within IAI46_12265at 2602.790 kb on + strand, within IAI46_12265at 2602.790 kb on + strand, within IAI46_12265at 2602.791 kb on - strand, within IAI46_12265at 2603.103 kb on - strand, within IAI46_12270at 2603.444 kb on + strand, within IAI46_12270at 2603.477 kb on + strand, within IAI46_12270at 2603.498 kb on + strand, within IAI46_12270at 2603.520 kb on - strand, within IAI46_12270at 2603.676 kb on + strandat 2603.716 kb on - strandat 2603.724 kb on + strandat 2603.767 kb on + strandat 2603.767 kb on + strandat 2603.794 kb on + strandat 2603.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,601,267 + IAI46_12260 0.20 +0.7
2,601,268 - IAI46_12260 0.20 -1.0
2,601,383 + IAI46_12260 0.32 +1.0
2,601,422 + IAI46_12260 0.37 -0.4
2,601,614 + IAI46_12260 0.57 -1.1
2,601,617 + IAI46_12260 0.57 +0.9
2,601,682 - IAI46_12260 0.64 +0.2
2,601,688 + IAI46_12260 0.65 -2.9
2,601,931 + +0.6
2,601,932 - -1.7
2,601,952 - +0.7
2,601,988 - +0.5
2,602,025 + +1.3
2,602,055 - +0.5
2,602,057 - +2.3
2,602,057 - -0.6
2,602,069 + -1.4
2,602,172 + +0.9
2,602,224 - +1.4
2,602,278 + IAI46_12265 0.15 +0.1
2,602,278 + IAI46_12265 0.15 +0.0
2,602,278 + IAI46_12265 0.15 +0.7
2,602,307 - IAI46_12265 0.19 +0.3
2,602,479 - IAI46_12265 0.41 -0.0
2,602,479 - IAI46_12265 0.41 -1.8
2,602,680 - IAI46_12265 0.68 -0.7
2,602,761 + IAI46_12265 0.78 -0.6
2,602,773 - IAI46_12265 0.80 +1.1
2,602,790 + IAI46_12265 0.82 -0.2
2,602,790 + IAI46_12265 0.82 -0.5
2,602,791 - IAI46_12265 0.82 -0.7
2,603,103 - IAI46_12270 0.19 -0.1
2,603,444 + IAI46_12270 0.63 -0.1
2,603,477 + IAI46_12270 0.68 -0.2
2,603,498 + IAI46_12270 0.70 +1.6
2,603,520 - IAI46_12270 0.73 +0.6
2,603,676 + +0.4
2,603,716 - -0.7
2,603,724 + -0.4
2,603,767 + -0.6
2,603,767 + +0.2
2,603,794 + -0.4
2,603,794 + -0.1

Or see this region's nucleotide sequence