Strain Fitness in Serratia liquefaciens MT49 around IAI46_11220

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11210 and IAI46_11215 are separated by 242 nucleotidesIAI46_11215 and IAI46_11220 are separated by 29 nucleotidesIAI46_11220 and IAI46_11225 are separated by 65 nucleotides IAI46_11210: IAI46_11210 - MATE family efflux transporter, at 2,367,425 to 2,368,801 _11210 IAI46_11215: IAI46_11215 - riboflavin synthase, at 2,369,044 to 2,369,694 _11215 IAI46_11220: IAI46_11220 - peptidase inhibitor I78 family protein, at 2,369,724 to 2,370,020 _11220 IAI46_11225: IAI46_11225 - cyclopropane fatty acyl phospholipid synthase, at 2,370,086 to 2,371,237 _11225 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -2 -1 0 1at 2368.734 kb on - strandat 2368.792 kb on - strandat 2368.805 kb on + strandat 2368.805 kb on + strandat 2368.806 kb on - strandat 2368.806 kb on - strandat 2368.817 kb on - strandat 2368.820 kb on + strandat 2368.931 kb on + strandat 2368.931 kb on + strandat 2369.752 kb on + strandat 2369.863 kb on - strand, within IAI46_11220at 2369.914 kb on + strand, within IAI46_11220at 2369.930 kb on + strand, within IAI46_11220at 2370.038 kb on + strandat 2370.038 kb on + strandat 2370.038 kb on + strandat 2370.038 kb on + strandat 2370.041 kb on - strandat 2370.084 kb on - strandat 2370.088 kb on - strandat 2370.190 kb on - strandat 2370.192 kb on + strandat 2370.222 kb on + strand, within IAI46_11225at 2370.301 kb on + strand, within IAI46_11225at 2370.350 kb on - strand, within IAI46_11225at 2370.388 kb on - strand, within IAI46_11225at 2370.388 kb on - strand, within IAI46_11225at 2370.388 kb on - strand, within IAI46_11225at 2370.415 kb on + strand, within IAI46_11225at 2370.415 kb on + strand, within IAI46_11225at 2370.416 kb on - strand, within IAI46_11225at 2370.439 kb on + strand, within IAI46_11225at 2370.439 kb on + strand, within IAI46_11225at 2370.440 kb on - strand, within IAI46_11225at 2370.453 kb on - strand, within IAI46_11225at 2370.453 kb on - strand, within IAI46_11225at 2370.468 kb on - strand, within IAI46_11225at 2370.545 kb on - strand, within IAI46_11225at 2370.836 kb on - strand, within IAI46_11225at 2370.836 kb on - strand, within IAI46_11225at 2370.836 kb on - strand, within IAI46_11225at 2370.838 kb on - strand, within IAI46_11225at 2370.838 kb on - strand, within IAI46_11225at 2370.879 kb on + strand, within IAI46_11225at 2370.956 kb on - strand, within IAI46_11225at 2371.017 kb on - strand, within IAI46_11225

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,368,734 - -0.1
2,368,792 - -1.0
2,368,805 + -0.3
2,368,805 + -0.8
2,368,806 - +0.6
2,368,806 - -0.1
2,368,817 - +0.6
2,368,820 + -0.3
2,368,931 + -0.5
2,368,931 + -0.8
2,369,752 + -1.0
2,369,863 - IAI46_11220 0.47 +0.2
2,369,914 + IAI46_11220 0.64 +0.3
2,369,930 + IAI46_11220 0.69 -2.2
2,370,038 + +0.2
2,370,038 + -0.6
2,370,038 + -0.5
2,370,038 + +0.3
2,370,041 - -0.4
2,370,084 - +1.0
2,370,088 - +0.8
2,370,190 - +1.1
2,370,192 + -0.4
2,370,222 + IAI46_11225 0.12 +0.5
2,370,301 + IAI46_11225 0.19 +0.5
2,370,350 - IAI46_11225 0.23 -0.2
2,370,388 - IAI46_11225 0.26 -0.3
2,370,388 - IAI46_11225 0.26 -0.2
2,370,388 - IAI46_11225 0.26 -0.3
2,370,415 + IAI46_11225 0.29 +1.3
2,370,415 + IAI46_11225 0.29 -0.0
2,370,416 - IAI46_11225 0.29 -0.0
2,370,439 + IAI46_11225 0.31 -0.1
2,370,439 + IAI46_11225 0.31 +0.4
2,370,440 - IAI46_11225 0.31 +1.5
2,370,453 - IAI46_11225 0.32 +0.9
2,370,453 - IAI46_11225 0.32 +0.6
2,370,468 - IAI46_11225 0.33 -0.6
2,370,545 - IAI46_11225 0.40 +0.2
2,370,836 - IAI46_11225 0.65 +0.8
2,370,836 - IAI46_11225 0.65 +0.7
2,370,836 - IAI46_11225 0.65 +0.3
2,370,838 - IAI46_11225 0.65 +1.3
2,370,838 - IAI46_11225 0.65 +0.1
2,370,879 + IAI46_11225 0.69 +0.3
2,370,956 - IAI46_11225 0.76 +0.1
2,371,017 - IAI46_11225 0.81 -0.2

Or see this region's nucleotide sequence