Strain Fitness in Serratia liquefaciens MT49 around IAI46_10955

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10950 and IAI46_10955 are separated by 414 nucleotidesIAI46_10955 and IAI46_10960 are separated by 3 nucleotidesIAI46_10960 and IAI46_10965 are separated by 98 nucleotidesIAI46_10965 and IAI46_10970 are separated by 43 nucleotides IAI46_10950: IAI46_10950 - hypothetical protein, at 2,314,871 to 2,315,239 _10950 IAI46_10955: IAI46_10955 - threonine--tRNA ligase, at 2,315,654 to 2,317,582 _10955 IAI46_10960: IAI46_10960 - translation initiation factor IF-3, at 2,317,586 to 2,318,137 _10960 IAI46_10965: IAI46_10965 - 50S ribosomal protein L35, at 2,318,236 to 2,318,433 _10965 IAI46_10970: IAI46_10970 - 50S ribosomal protein L20, at 2,318,477 to 2,318,833 _10970 Position (kb) 2315 2316 2317 2318Strain fitness (log2 ratio) -1 0 1at 2314.705 kb on + strandat 2314.780 kb on - strandat 2314.816 kb on + strandat 2314.816 kb on + strandat 2314.817 kb on - strandat 2314.887 kb on + strandat 2314.939 kb on - strand, within IAI46_10950at 2314.961 kb on - strand, within IAI46_10950at 2314.991 kb on - strand, within IAI46_10950at 2315.013 kb on - strand, within IAI46_10950at 2315.013 kb on - strand, within IAI46_10950at 2315.013 kb on - strand, within IAI46_10950at 2315.025 kb on + strand, within IAI46_10950at 2315.025 kb on + strand, within IAI46_10950at 2315.025 kb on + strand, within IAI46_10950at 2315.026 kb on - strand, within IAI46_10950at 2315.085 kb on - strand, within IAI46_10950at 2315.103 kb on - strand, within IAI46_10950at 2315.115 kb on + strand, within IAI46_10950at 2315.156 kb on + strand, within IAI46_10950at 2315.156 kb on + strand, within IAI46_10950at 2315.157 kb on - strand, within IAI46_10950at 2315.170 kb on + strand, within IAI46_10950at 2315.170 kb on + strand, within IAI46_10950at 2315.170 kb on + strand, within IAI46_10950at 2315.196 kb on + strand, within IAI46_10950at 2315.202 kb on + strand, within IAI46_10950at 2315.221 kb on + strandat 2315.264 kb on - strandat 2315.266 kb on + strandat 2315.267 kb on - strandat 2315.281 kb on - strandat 2315.332 kb on - strandat 2315.332 kb on - strandat 2315.332 kb on - strandat 2315.345 kb on + strandat 2315.379 kb on - strandat 2315.508 kb on + strandat 2315.511 kb on + strandat 2315.539 kb on + strandat 2315.543 kb on + strandat 2315.589 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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2,314,705 + -0.1
2,314,780 - +0.4
2,314,816 + +0.3
2,314,816 + +0.8
2,314,817 - +0.1
2,314,887 + -0.2
2,314,939 - IAI46_10950 0.18 -0.8
2,314,961 - IAI46_10950 0.24 -0.2
2,314,991 - IAI46_10950 0.33 +1.7
2,315,013 - IAI46_10950 0.38 +0.3
2,315,013 - IAI46_10950 0.38 +0.3
2,315,013 - IAI46_10950 0.38 +0.2
2,315,025 + IAI46_10950 0.42 -0.8
2,315,025 + IAI46_10950 0.42 +0.4
2,315,025 + IAI46_10950 0.42 +0.3
2,315,026 - IAI46_10950 0.42 +0.3
2,315,085 - IAI46_10950 0.58 +0.5
2,315,103 - IAI46_10950 0.63 -0.8
2,315,115 + IAI46_10950 0.66 +1.2
2,315,156 + IAI46_10950 0.77 -0.1
2,315,156 + IAI46_10950 0.77 -0.5
2,315,157 - IAI46_10950 0.78 +1.3
2,315,170 + IAI46_10950 0.81 -0.1
2,315,170 + IAI46_10950 0.81 -1.6
2,315,170 + IAI46_10950 0.81 -1.0
2,315,196 + IAI46_10950 0.88 +0.2
2,315,202 + IAI46_10950 0.90 +0.3
2,315,221 + +0.8
2,315,264 - -0.2
2,315,266 + +0.9
2,315,267 - +1.2
2,315,281 - -1.2
2,315,332 - +0.9
2,315,332 - +0.7
2,315,332 - +0.1
2,315,345 + -0.4
2,315,379 - -0.3
2,315,508 + +0.9
2,315,511 + +0.1
2,315,539 + +1.0
2,315,543 + +0.5
2,315,589 + +0.8

Or see this region's nucleotide sequence