Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10390 and IAI46_10395 are separated by 5 nucleotides IAI46_10395 and IAI46_10400 are separated by 320 nucleotides
IAI46_10390: IAI46_10390 - two-component system sensor histidine kinase PhoQ, at 2,196,100 to 2,197,557
_10390
IAI46_10395: IAI46_10395 - two-component system response regulator PhoP, at 2,197,563 to 2,198,234
_10395
IAI46_10400: IAI46_10400 - cytochrome c, at 2,198,555 to 2,199,835
_10400
Position (kb)
2197
2198
2199 Strain fitness (log2 ratio)
-2
-1
0
1 at 2196.602 kb on + strand, within IAI46_10390 at 2196.603 kb on - strand, within IAI46_10390 at 2196.679 kb on - strand, within IAI46_10390 at 2196.688 kb on + strand, within IAI46_10390 at 2196.688 kb on + strand, within IAI46_10390 at 2196.689 kb on - strand, within IAI46_10390 at 2196.810 kb on + strand, within IAI46_10390 at 2196.978 kb on - strand, within IAI46_10390 at 2196.995 kb on - strand, within IAI46_10390 at 2197.076 kb on + strand, within IAI46_10390 at 2197.077 kb on - strand, within IAI46_10390 at 2197.127 kb on + strand, within IAI46_10390 at 2197.469 kb on + strand at 2197.470 kb on - strand at 2197.851 kb on + strand, within IAI46_10395 at 2197.902 kb on - strand, within IAI46_10395 at 2198.199 kb on + strand at 2198.282 kb on + strand at 2198.329 kb on + strand at 2198.330 kb on - strand at 2198.330 kb on - strand at 2198.330 kb on - strand at 2198.330 kb on - strand at 2198.356 kb on + strand at 2198.357 kb on - strand at 2198.362 kb on - strand at 2198.362 kb on - strand at 2198.362 kb on - strand at 2198.365 kb on + strand at 2198.365 kb on + strand at 2198.366 kb on - strand at 2198.366 kb on - strand at 2198.366 kb on - strand at 2198.411 kb on - strand at 2198.424 kb on - strand at 2198.427 kb on + strand at 2198.759 kb on - strand, within IAI46_10400 at 2198.828 kb on - strand, within IAI46_10400 at 2198.903 kb on + strand, within IAI46_10400 at 2199.005 kb on + strand, within IAI46_10400 at 2199.005 kb on + strand, within IAI46_10400 at 2199.005 kb on + strand, within IAI46_10400 at 2199.005 kb on + strand, within IAI46_10400 at 2199.005 kb on + strand, within IAI46_10400 at 2199.006 kb on - strand, within IAI46_10400 at 2199.025 kb on - strand, within IAI46_10400
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 2,196,602 + IAI46_10390 0.34 -1.2 2,196,603 - IAI46_10390 0.34 +1.0 2,196,679 - IAI46_10390 0.40 -0.3 2,196,688 + IAI46_10390 0.40 -0.8 2,196,688 + IAI46_10390 0.40 +0.4 2,196,689 - IAI46_10390 0.40 -1.3 2,196,810 + IAI46_10390 0.49 +0.8 2,196,978 - IAI46_10390 0.60 -0.9 2,196,995 - IAI46_10390 0.61 -0.0 2,197,076 + IAI46_10390 0.67 +0.6 2,197,077 - IAI46_10390 0.67 -0.2 2,197,127 + IAI46_10390 0.70 -0.8 2,197,469 + -0.4 2,197,470 - +0.1 2,197,851 + IAI46_10395 0.43 +0.9 2,197,902 - IAI46_10395 0.50 -0.3 2,198,199 + -0.7 2,198,282 + +0.2 2,198,329 + +0.9 2,198,330 - +1.0 2,198,330 - -0.0 2,198,330 - -0.8 2,198,330 - -0.1 2,198,356 + +0.1 2,198,357 - +0.7 2,198,362 - -0.7 2,198,362 - +0.6 2,198,362 - +0.5 2,198,365 + +0.9 2,198,365 + -2.5 2,198,366 - +0.3 2,198,366 - +0.5 2,198,366 - +0.3 2,198,411 - +0.2 2,198,424 - -0.6 2,198,427 + +0.8 2,198,759 - IAI46_10400 0.16 +1.2 2,198,828 - IAI46_10400 0.21 -0.1 2,198,903 + IAI46_10400 0.27 +0.6 2,199,005 + IAI46_10400 0.35 +0.8 2,199,005 + IAI46_10400 0.35 +0.6 2,199,005 + IAI46_10400 0.35 -0.3 2,199,005 + IAI46_10400 0.35 -2.3 2,199,005 + IAI46_10400 0.35 -0.9 2,199,006 - IAI46_10400 0.35 +0.1 2,199,025 - IAI46_10400 0.37 -1.4
Or see this region's nucleotide sequence