Strain Fitness in Serratia liquefaciens MT49 around IAI46_04785

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04780 and IAI46_04785 are separated by 14 nucleotidesIAI46_04785 and IAI46_04790 are separated by 211 nucleotides IAI46_04780: IAI46_04780 - phosphate regulon sensor histidine kinase PhoR, at 1,026,644 to 1,027,960 _04780 IAI46_04785: IAI46_04785 - phosphate ABC transporter substrate-binding protein PstS family protein, at 1,027,975 to 1,028,913 _04785 IAI46_04790: IAI46_04790 - cobalamin-independent methionine synthase II family protein, at 1,029,125 to 1,030,231 _04790 Position (kb) 1027 1028 1029Strain fitness (log2 ratio) -2 -1 0 1at 1027.000 kb on + strand, within IAI46_04780at 1027.000 kb on + strand, within IAI46_04780at 1027.001 kb on - strand, within IAI46_04780at 1027.106 kb on + strand, within IAI46_04780at 1027.163 kb on + strand, within IAI46_04780at 1027.164 kb on - strand, within IAI46_04780at 1027.164 kb on - strand, within IAI46_04780at 1027.203 kb on + strand, within IAI46_04780at 1027.203 kb on + strand, within IAI46_04780at 1027.203 kb on + strand, within IAI46_04780at 1027.203 kb on + strand, within IAI46_04780at 1027.203 kb on + strand, within IAI46_04780at 1027.203 kb on + strand, within IAI46_04780at 1027.204 kb on - strand, within IAI46_04780at 1027.213 kb on - strand, within IAI46_04780at 1027.305 kb on + strand, within IAI46_04780at 1027.305 kb on + strand, within IAI46_04780at 1027.306 kb on - strand, within IAI46_04780at 1027.317 kb on - strand, within IAI46_04780at 1027.454 kb on - strand, within IAI46_04780at 1027.503 kb on + strand, within IAI46_04780at 1027.503 kb on + strand, within IAI46_04780at 1027.622 kb on + strand, within IAI46_04780at 1027.622 kb on + strand, within IAI46_04780at 1027.622 kb on + strand, within IAI46_04780at 1027.622 kb on + strand, within IAI46_04780at 1027.623 kb on - strand, within IAI46_04780at 1027.623 kb on - strand, within IAI46_04780at 1027.624 kb on + strand, within IAI46_04780at 1027.625 kb on - strand, within IAI46_04780at 1027.657 kb on + strand, within IAI46_04780at 1027.711 kb on + strand, within IAI46_04780at 1027.738 kb on + strand, within IAI46_04780at 1027.738 kb on + strand, within IAI46_04780at 1027.738 kb on + strand, within IAI46_04780at 1027.738 kb on + strand, within IAI46_04780at 1027.763 kb on + strand, within IAI46_04780at 1028.272 kb on + strand, within IAI46_04785at 1028.295 kb on - strand, within IAI46_04785at 1028.356 kb on - strand, within IAI46_04785at 1028.356 kb on - strand, within IAI46_04785at 1028.485 kb on - strand, within IAI46_04785at 1028.504 kb on - strand, within IAI46_04785at 1028.614 kb on - strand, within IAI46_04785at 1028.651 kb on + strand, within IAI46_04785at 1028.686 kb on + strand, within IAI46_04785at 1028.686 kb on + strand, within IAI46_04785at 1028.686 kb on + strand, within IAI46_04785at 1028.687 kb on - strand, within IAI46_04785at 1028.740 kb on + strand, within IAI46_04785at 1028.740 kb on + strand, within IAI46_04785at 1028.741 kb on - strand, within IAI46_04785at 1028.741 kb on - strand, within IAI46_04785at 1028.747 kb on - strand, within IAI46_04785at 1028.747 kb on - strand, within IAI46_04785at 1028.749 kb on - strand, within IAI46_04785at 1028.749 kb on - strand, within IAI46_04785at 1028.753 kb on - strand, within IAI46_04785at 1028.753 kb on - strand, within IAI46_04785at 1028.757 kb on + strand, within IAI46_04785at 1028.757 kb on + strand, within IAI46_04785at 1028.758 kb on - strand, within IAI46_04785at 1028.760 kb on + strand, within IAI46_04785at 1028.760 kb on + strand, within IAI46_04785at 1028.760 kb on + strand, within IAI46_04785at 1028.912 kb on - strandat 1029.014 kb on + strandat 1029.014 kb on + strandat 1029.015 kb on - strandat 1029.058 kb on + strandat 1029.121 kb on + strandat 1029.121 kb on + strandat 1029.121 kb on + strandat 1029.121 kb on + strandat 1029.121 kb on + strandat 1029.122 kb on - strandat 1029.122 kb on - strandat 1029.124 kb on + strandat 1029.124 kb on + strandat 1029.124 kb on + strandat 1029.124 kb on + strandat 1029.125 kb on - strandat 1029.380 kb on + strand, within IAI46_04790at 1029.380 kb on + strand, within IAI46_04790at 1029.381 kb on - strand, within IAI46_04790at 1029.415 kb on - strand, within IAI46_04790at 1029.415 kb on - strand, within IAI46_04790at 1029.433 kb on + strand, within IAI46_04790at 1029.574 kb on + strand, within IAI46_04790at 1029.574 kb on + strand, within IAI46_04790at 1029.615 kb on - strand, within IAI46_04790at 1029.662 kb on + strand, within IAI46_04790at 1029.662 kb on + strand, within IAI46_04790at 1029.663 kb on - strand, within IAI46_04790at 1029.681 kb on - strand, within IAI46_04790at 1029.710 kb on + strand, within IAI46_04790at 1029.710 kb on + strand, within IAI46_04790at 1029.710 kb on + strand, within IAI46_04790at 1029.711 kb on - strand, within IAI46_04790at 1029.780 kb on + strand, within IAI46_04790at 1029.781 kb on - strand, within IAI46_04790at 1029.782 kb on + strand, within IAI46_04790at 1029.782 kb on + strand, within IAI46_04790at 1029.782 kb on + strand, within IAI46_04790at 1029.782 kb on + strand, within IAI46_04790at 1029.783 kb on - strand, within IAI46_04790at 1029.783 kb on - strand, within IAI46_04790at 1029.783 kb on - strand, within IAI46_04790at 1029.890 kb on + strand, within IAI46_04790

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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1,027,000 + IAI46_04780 0.27 +0.5
1,027,000 + IAI46_04780 0.27 -0.2
1,027,001 - IAI46_04780 0.27 -0.0
1,027,106 + IAI46_04780 0.35 -1.9
1,027,163 + IAI46_04780 0.39 -1.4
1,027,164 - IAI46_04780 0.39 +0.6
1,027,164 - IAI46_04780 0.39 -1.0
1,027,203 + IAI46_04780 0.42 -0.3
1,027,203 + IAI46_04780 0.42 +0.0
1,027,203 + IAI46_04780 0.42 -0.0
1,027,203 + IAI46_04780 0.42 +0.2
1,027,203 + IAI46_04780 0.42 +0.9
1,027,203 + IAI46_04780 0.42 -0.0
1,027,204 - IAI46_04780 0.43 +0.0
1,027,213 - IAI46_04780 0.43 +0.8
1,027,305 + IAI46_04780 0.50 +0.1
1,027,305 + IAI46_04780 0.50 -0.6
1,027,306 - IAI46_04780 0.50 -0.5
1,027,317 - IAI46_04780 0.51 -1.4
1,027,454 - IAI46_04780 0.62 +0.3
1,027,503 + IAI46_04780 0.65 +0.1
1,027,503 + IAI46_04780 0.65 +0.8
1,027,622 + IAI46_04780 0.74 +0.6
1,027,622 + IAI46_04780 0.74 -0.8
1,027,622 + IAI46_04780 0.74 +0.0
1,027,622 + IAI46_04780 0.74 +0.7
1,027,623 - IAI46_04780 0.74 -1.1
1,027,623 - IAI46_04780 0.74 -0.0
1,027,624 + IAI46_04780 0.74 +1.1
1,027,625 - IAI46_04780 0.74 -0.5
1,027,657 + IAI46_04780 0.77 +0.1
1,027,711 + IAI46_04780 0.81 +0.9
1,027,738 + IAI46_04780 0.83 -0.9
1,027,738 + IAI46_04780 0.83 -0.4
1,027,738 + IAI46_04780 0.83 -0.8
1,027,738 + IAI46_04780 0.83 +0.6
1,027,763 + IAI46_04780 0.85 +0.3
1,028,272 + IAI46_04785 0.32 +0.3
1,028,295 - IAI46_04785 0.34 +0.4
1,028,356 - IAI46_04785 0.41 -1.4
1,028,356 - IAI46_04785 0.41 +1.0
1,028,485 - IAI46_04785 0.54 -0.4
1,028,504 - IAI46_04785 0.56 +0.1
1,028,614 - IAI46_04785 0.68 +0.5
1,028,651 + IAI46_04785 0.72 -0.3
1,028,686 + IAI46_04785 0.76 -0.3
1,028,686 + IAI46_04785 0.76 +0.5
1,028,686 + IAI46_04785 0.76 +0.1
1,028,687 - IAI46_04785 0.76 -1.8
1,028,740 + IAI46_04785 0.81 -0.3
1,028,740 + IAI46_04785 0.81 -0.8
1,028,741 - IAI46_04785 0.82 -0.4
1,028,741 - IAI46_04785 0.82 +0.3
1,028,747 - IAI46_04785 0.82 +0.4
1,028,747 - IAI46_04785 0.82 +0.9
1,028,749 - IAI46_04785 0.82 +1.1
1,028,749 - IAI46_04785 0.82 -0.9
1,028,753 - IAI46_04785 0.83 -0.0
1,028,753 - IAI46_04785 0.83 +1.0
1,028,757 + IAI46_04785 0.83 -0.2
1,028,757 + IAI46_04785 0.83 -0.2
1,028,758 - IAI46_04785 0.83 -0.4
1,028,760 + IAI46_04785 0.84 -0.4
1,028,760 + IAI46_04785 0.84 -0.5
1,028,760 + IAI46_04785 0.84 -0.7
1,028,912 - +0.5
1,029,014 + +0.1
1,029,014 + +0.4
1,029,015 - +1.6
1,029,058 + -0.1
1,029,121 + -0.1
1,029,121 + -0.7
1,029,121 + +0.4
1,029,121 + -0.0
1,029,121 + -0.7
1,029,122 - +0.9
1,029,122 - +0.2
1,029,124 + -0.1
1,029,124 + +0.5
1,029,124 + -0.2
1,029,124 + -0.4
1,029,125 - +0.5
1,029,380 + IAI46_04790 0.23 +0.0
1,029,380 + IAI46_04790 0.23 -0.6
1,029,381 - IAI46_04790 0.23 -0.8
1,029,415 - IAI46_04790 0.26 -1.1
1,029,415 - IAI46_04790 0.26 -0.2
1,029,433 + IAI46_04790 0.28 -0.3
1,029,574 + IAI46_04790 0.41 +0.4
1,029,574 + IAI46_04790 0.41 +1.1
1,029,615 - IAI46_04790 0.44 -0.5
1,029,662 + IAI46_04790 0.49 -0.8
1,029,662 + IAI46_04790 0.49 +0.4
1,029,663 - IAI46_04790 0.49 +0.3
1,029,681 - IAI46_04790 0.50 +1.1
1,029,710 + IAI46_04790 0.53 +0.7
1,029,710 + IAI46_04790 0.53 -0.5
1,029,710 + IAI46_04790 0.53 -0.9
1,029,711 - IAI46_04790 0.53 -0.2
1,029,780 + IAI46_04790 0.59 +0.2
1,029,781 - IAI46_04790 0.59 -1.3
1,029,782 + IAI46_04790 0.59 -0.7
1,029,782 + IAI46_04790 0.59 -0.7
1,029,782 + IAI46_04790 0.59 -0.0
1,029,782 + IAI46_04790 0.59 -0.1
1,029,783 - IAI46_04790 0.59 +0.1
1,029,783 - IAI46_04790 0.59 -1.8
1,029,783 - IAI46_04790 0.59 -0.4
1,029,890 + IAI46_04790 0.69 +0.7

Or see this region's nucleotide sequence