Strain Fitness in Serratia liquefaciens MT49 around IAI46_04300

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04290 and IAI46_04295 are separated by 39 nucleotidesIAI46_04295 and IAI46_04300 overlap by 13 nucleotidesIAI46_04300 and IAI46_04305 are separated by 162 nucleotidesIAI46_04305 and IAI46_04310 overlap by 4 nucleotides IAI46_04290: IAI46_04290 - purine permease, at 920,481 to 921,833 _04290 IAI46_04295: IAI46_04295 - amidohydrolase, at 921,873 to 922,646 _04295 IAI46_04300: IAI46_04300 - pyridoxal phosphate-dependent aminotransferase, at 922,634 to 923,794 _04300 IAI46_04305: IAI46_04305 - methylthioribulose 1-phosphate dehydratase, at 923,957 to 924,571 _04305 IAI46_04310: IAI46_04310 - acireductone synthase, at 924,568 to 925,257 _04310 Position (kb) 922 923 924Strain fitness (log2 ratio) -2 -1 0 1 2at 921.694 kb on - strand, within IAI46_04290at 921.719 kb on + strandat 921.719 kb on + strandat 921.720 kb on - strandat 921.720 kb on - strandat 922.039 kb on + strand, within IAI46_04295at 922.039 kb on + strand, within IAI46_04295at 922.088 kb on - strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.165 kb on + strand, within IAI46_04295at 922.166 kb on - strand, within IAI46_04295at 922.166 kb on - strand, within IAI46_04295at 922.180 kb on + strand, within IAI46_04295at 922.181 kb on - strand, within IAI46_04295at 922.223 kb on - strand, within IAI46_04295at 922.223 kb on - strand, within IAI46_04295at 922.328 kb on + strand, within IAI46_04295at 922.328 kb on + strand, within IAI46_04295at 922.333 kb on + strand, within IAI46_04295at 922.334 kb on - strand, within IAI46_04295at 922.334 kb on - strand, within IAI46_04295at 922.514 kb on + strand, within IAI46_04295at 922.514 kb on + strand, within IAI46_04295at 922.515 kb on - strand, within IAI46_04295at 922.531 kb on - strand, within IAI46_04295at 922.551 kb on + strand, within IAI46_04295at 922.552 kb on - strand, within IAI46_04295at 922.552 kb on - strand, within IAI46_04295at 922.629 kb on - strandat 922.684 kb on + strandat 922.829 kb on + strand, within IAI46_04300at 922.830 kb on - strand, within IAI46_04300at 922.836 kb on + strand, within IAI46_04300at 922.836 kb on + strand, within IAI46_04300at 922.836 kb on + strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.837 kb on - strand, within IAI46_04300at 922.854 kb on - strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.922 kb on + strand, within IAI46_04300at 922.923 kb on - strand, within IAI46_04300at 922.923 kb on - strand, within IAI46_04300at 922.923 kb on - strand, within IAI46_04300at 922.957 kb on + strand, within IAI46_04300at 922.957 kb on + strand, within IAI46_04300at 922.958 kb on - strand, within IAI46_04300at 922.958 kb on - strand, within IAI46_04300at 923.004 kb on + strand, within IAI46_04300at 923.004 kb on + strand, within IAI46_04300at 923.005 kb on - strand, within IAI46_04300at 923.005 kb on - strand, within IAI46_04300at 923.173 kb on + strand, within IAI46_04300at 923.173 kb on + strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.174 kb on - strand, within IAI46_04300at 923.181 kb on + strand, within IAI46_04300at 923.182 kb on - strand, within IAI46_04300at 923.202 kb on + strand, within IAI46_04300at 923.203 kb on - strand, within IAI46_04300at 923.242 kb on + strand, within IAI46_04300at 923.242 kb on + strand, within IAI46_04300at 923.284 kb on + strand, within IAI46_04300at 923.285 kb on - strand, within IAI46_04300at 923.318 kb on + strand, within IAI46_04300at 923.318 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.412 kb on + strand, within IAI46_04300at 923.413 kb on - strand, within IAI46_04300at 923.421 kb on + strand, within IAI46_04300at 923.421 kb on + strand, within IAI46_04300at 923.422 kb on - strand, within IAI46_04300at 923.495 kb on - strand, within IAI46_04300at 923.512 kb on + strand, within IAI46_04300at 923.513 kb on - strand, within IAI46_04300at 923.607 kb on + strand, within IAI46_04300at 923.608 kb on - strand, within IAI46_04300at 923.795 kb on - strandat 923.795 kb on - strandat 923.795 kb on - strandat 923.802 kb on + strandat 923.803 kb on - strandat 923.803 kb on - strandat 923.806 kb on - strandat 923.806 kb on - strandat 923.818 kb on + strandat 923.819 kb on - strandat 923.832 kb on + strandat 923.833 kb on - strandat 923.833 kb on - strandat 923.834 kb on + strandat 923.835 kb on - strandat 923.848 kb on + strandat 923.848 kb on + strandat 923.849 kb on - strandat 923.849 kb on - strandat 923.869 kb on - strandat 923.869 kb on - strandat 923.900 kb on + strandat 923.901 kb on - strandat 923.915 kb on - strandat 923.938 kb on + strandat 923.938 kb on + strandat 923.939 kb on - strandat 923.939 kb on - strandat 923.939 kb on - strandat 923.978 kb on - strandat 924.193 kb on + strand, within IAI46_04305at 924.193 kb on + strand, within IAI46_04305at 924.194 kb on - strand, within IAI46_04305at 924.239 kb on - strand, within IAI46_04305at 924.306 kb on - strand, within IAI46_04305at 924.306 kb on - strand, within IAI46_04305at 924.308 kb on + strand, within IAI46_04305at 924.354 kb on + strand, within IAI46_04305at 924.440 kb on + strand, within IAI46_04305at 924.440 kb on + strand, within IAI46_04305at 924.470 kb on + strand, within IAI46_04305at 924.470 kb on + strand, within IAI46_04305at 924.471 kb on - strand, within IAI46_04305at 924.471 kb on - strand, within IAI46_04305at 924.555 kb on + strandat 924.601 kb on - strandat 924.601 kb on - strandat 924.669 kb on + strand, within IAI46_04310at 924.750 kb on + strand, within IAI46_04310at 924.762 kb on + strand, within IAI46_04310at 924.763 kb on - strand, within IAI46_04310at 924.783 kb on + strand, within IAI46_04310

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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921,694 - IAI46_04290 0.90 +0.7
921,719 + -0.3
921,719 + +0.7
921,720 - -0.1
921,720 - +0.6
922,039 + IAI46_04295 0.21 -0.1
922,039 + IAI46_04295 0.21 -0.2
922,088 - IAI46_04295 0.28 -0.0
922,165 + IAI46_04295 0.38 +0.0
922,165 + IAI46_04295 0.38 +0.2
922,165 + IAI46_04295 0.38 -0.6
922,165 + IAI46_04295 0.38 -0.4
922,166 - IAI46_04295 0.38 -0.3
922,166 - IAI46_04295 0.38 -1.1
922,180 + IAI46_04295 0.40 +0.3
922,181 - IAI46_04295 0.40 +0.1
922,223 - IAI46_04295 0.45 +1.2
922,223 - IAI46_04295 0.45 -0.1
922,328 + IAI46_04295 0.59 -0.4
922,328 + IAI46_04295 0.59 -1.0
922,333 + IAI46_04295 0.59 +1.1
922,334 - IAI46_04295 0.60 -0.0
922,334 - IAI46_04295 0.60 +0.1
922,514 + IAI46_04295 0.83 -0.1
922,514 + IAI46_04295 0.83 -0.4
922,515 - IAI46_04295 0.83 -0.1
922,531 - IAI46_04295 0.85 +0.2
922,551 + IAI46_04295 0.88 +0.1
922,552 - IAI46_04295 0.88 +0.8
922,552 - IAI46_04295 0.88 +0.5
922,629 - +0.6
922,684 + +0.3
922,829 + IAI46_04300 0.17 +0.1
922,830 - IAI46_04300 0.17 +0.2
922,836 + IAI46_04300 0.17 -0.1
922,836 + IAI46_04300 0.17 +0.9
922,836 + IAI46_04300 0.17 +0.8
922,837 - IAI46_04300 0.17 +1.4
922,837 - IAI46_04300 0.17 -1.0
922,837 - IAI46_04300 0.17 +1.9
922,837 - IAI46_04300 0.17 +0.4
922,854 - IAI46_04300 0.19 +1.0
922,922 + IAI46_04300 0.25 +0.2
922,922 + IAI46_04300 0.25 +0.3
922,922 + IAI46_04300 0.25 +0.3
922,922 + IAI46_04300 0.25 +0.4
922,923 - IAI46_04300 0.25 +1.9
922,923 - IAI46_04300 0.25 +0.3
922,923 - IAI46_04300 0.25 -0.2
922,957 + IAI46_04300 0.28 +0.1
922,957 + IAI46_04300 0.28 +0.3
922,958 - IAI46_04300 0.28 +0.0
922,958 - IAI46_04300 0.28 +0.1
923,004 + IAI46_04300 0.32 -0.3
923,004 + IAI46_04300 0.32 +0.2
923,005 - IAI46_04300 0.32 -1.0
923,005 - IAI46_04300 0.32 +0.3
923,173 + IAI46_04300 0.46 +0.4
923,173 + IAI46_04300 0.46 -0.2
923,174 - IAI46_04300 0.47 +0.7
923,174 - IAI46_04300 0.47 +0.0
923,174 - IAI46_04300 0.47 -0.2
923,174 - IAI46_04300 0.47 +0.9
923,181 + IAI46_04300 0.47 -0.5
923,182 - IAI46_04300 0.47 +0.4
923,202 + IAI46_04300 0.49 -0.9
923,203 - IAI46_04300 0.49 -0.1
923,242 + IAI46_04300 0.52 -1.1
923,242 + IAI46_04300 0.52 +0.2
923,284 + IAI46_04300 0.56 +0.3
923,285 - IAI46_04300 0.56 -1.0
923,318 + IAI46_04300 0.59 +0.1
923,318 + IAI46_04300 0.59 +0.2
923,412 + IAI46_04300 0.67 +0.9
923,412 + IAI46_04300 0.67 -0.6
923,412 + IAI46_04300 0.67 -0.6
923,412 + IAI46_04300 0.67 -0.5
923,413 - IAI46_04300 0.67 +0.3
923,421 + IAI46_04300 0.68 -0.7
923,421 + IAI46_04300 0.68 +0.4
923,422 - IAI46_04300 0.68 +0.2
923,495 - IAI46_04300 0.74 +0.1
923,512 + IAI46_04300 0.76 -0.3
923,513 - IAI46_04300 0.76 -0.3
923,607 + IAI46_04300 0.84 +0.3
923,608 - IAI46_04300 0.84 -0.6
923,795 - -2.4
923,795 - -1.3
923,795 - +0.3
923,802 + +0.1
923,803 - +0.1
923,803 - +0.2
923,806 - -2.7
923,806 - -0.0
923,818 + +0.2
923,819 - -0.2
923,832 + +0.2
923,833 - -0.1
923,833 - -0.4
923,834 + +0.0
923,835 - +0.1
923,848 + -1.4
923,848 + -0.4
923,849 - +0.9
923,849 - +0.7
923,869 - -0.1
923,869 - +0.6
923,900 + +0.3
923,901 - +1.3
923,915 - +0.9
923,938 + +0.3
923,938 + +1.4
923,939 - -0.5
923,939 - +0.3
923,939 - +0.1
923,978 - -0.3
924,193 + IAI46_04305 0.38 +0.6
924,193 + IAI46_04305 0.38 -0.5
924,194 - IAI46_04305 0.39 +0.3
924,239 - IAI46_04305 0.46 -0.1
924,306 - IAI46_04305 0.57 +0.8
924,306 - IAI46_04305 0.57 +0.5
924,308 + IAI46_04305 0.57 +0.2
924,354 + IAI46_04305 0.65 +0.1
924,440 + IAI46_04305 0.79 +0.3
924,440 + IAI46_04305 0.79 +1.0
924,470 + IAI46_04305 0.83 +0.3
924,470 + IAI46_04305 0.83 +1.1
924,471 - IAI46_04305 0.84 +0.1
924,471 - IAI46_04305 0.84 +0.6
924,555 + -0.9
924,601 - +0.0
924,601 - -1.2
924,669 + IAI46_04310 0.15 -1.8
924,750 + IAI46_04310 0.26 -0.5
924,762 + IAI46_04310 0.28 +1.2
924,763 - IAI46_04310 0.28 +0.2
924,783 + IAI46_04310 0.31 +0.2

Or see this region's nucleotide sequence