Strain Fitness in Serratia liquefaciens MT49 around IAI46_04105

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04095 and IAI46_04100 overlap by 4 nucleotidesIAI46_04100 and IAI46_04105 overlap by 4 nucleotidesIAI46_04105 and IAI46_04110 are separated by 141 nucleotidesIAI46_04110 and IAI46_04115 are separated by 46 nucleotides IAI46_04095: IAI46_04095 - hotdog family protein, at 883,320 to 883,793 _04095 IAI46_04100: IAI46_04100 - 3-oxoacyl-ACP reductase FabG, at 883,790 to 884,521 _04100 IAI46_04105: IAI46_04105 - beta-ketoacyl-ACP synthase, at 884,518 to 885,747 _04105 IAI46_04110: IAI46_04110 - 2,5-didehydrogluconate reductase DkgB, at 885,889 to 886,692 _04110 IAI46_04115: IAI46_04115 - LysR family transcriptional regulator, at 886,739 to 887,626 _04115 Position (kb) 884 885 886Strain fitness (log2 ratio) -2 -1 0 1 2at 883.571 kb on + strand, within IAI46_04095at 883.571 kb on + strand, within IAI46_04095at 883.572 kb on - strand, within IAI46_04095at 883.738 kb on - strand, within IAI46_04095at 883.778 kb on - strandat 883.842 kb on + strandat 883.878 kb on + strand, within IAI46_04100at 883.878 kb on + strand, within IAI46_04100at 883.879 kb on - strand, within IAI46_04100at 883.887 kb on - strand, within IAI46_04100at 883.887 kb on - strand, within IAI46_04100at 883.970 kb on - strand, within IAI46_04100at 884.012 kb on - strand, within IAI46_04100at 884.031 kb on - strand, within IAI46_04100at 884.033 kb on + strand, within IAI46_04100at 884.034 kb on - strand, within IAI46_04100at 884.047 kb on + strand, within IAI46_04100at 884.048 kb on - strand, within IAI46_04100at 884.116 kb on + strand, within IAI46_04100at 884.135 kb on + strand, within IAI46_04100at 884.135 kb on + strand, within IAI46_04100at 884.136 kb on - strand, within IAI46_04100at 884.241 kb on + strand, within IAI46_04100at 884.242 kb on - strand, within IAI46_04100at 884.246 kb on + strand, within IAI46_04100at 884.246 kb on + strand, within IAI46_04100at 884.247 kb on - strand, within IAI46_04100at 884.281 kb on + strand, within IAI46_04100at 884.410 kb on + strand, within IAI46_04100at 884.411 kb on - strand, within IAI46_04100at 884.481 kb on + strandat 884.482 kb on - strandat 884.503 kb on + strandat 884.517 kb on + strandat 884.517 kb on + strandat 884.517 kb on + strandat 884.518 kb on - strandat 884.571 kb on + strandat 884.572 kb on - strandat 884.623 kb on + strandat 884.624 kb on - strandat 884.644 kb on + strand, within IAI46_04105at 884.645 kb on - strand, within IAI46_04105at 884.690 kb on + strand, within IAI46_04105at 884.691 kb on - strand, within IAI46_04105at 884.706 kb on + strand, within IAI46_04105at 884.706 kb on + strand, within IAI46_04105at 884.706 kb on + strand, within IAI46_04105at 884.707 kb on - strand, within IAI46_04105at 884.718 kb on + strand, within IAI46_04105at 884.870 kb on - strand, within IAI46_04105at 884.907 kb on + strand, within IAI46_04105at 884.910 kb on + strand, within IAI46_04105at 884.910 kb on + strand, within IAI46_04105at 884.923 kb on + strand, within IAI46_04105at 884.923 kb on + strand, within IAI46_04105at 884.923 kb on + strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 884.924 kb on - strand, within IAI46_04105at 885.043 kb on + strand, within IAI46_04105at 885.043 kb on + strand, within IAI46_04105at 885.043 kb on + strand, within IAI46_04105at 885.044 kb on - strand, within IAI46_04105at 885.044 kb on - strand, within IAI46_04105at 885.044 kb on - strand, within IAI46_04105at 885.207 kb on - strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.228 kb on + strand, within IAI46_04105at 885.229 kb on - strand, within IAI46_04105at 885.280 kb on + strand, within IAI46_04105at 885.281 kb on - strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.324 kb on + strand, within IAI46_04105at 885.325 kb on - strand, within IAI46_04105at 885.410 kb on - strand, within IAI46_04105at 885.410 kb on - strand, within IAI46_04105at 885.412 kb on - strand, within IAI46_04105at 885.412 kb on - strand, within IAI46_04105at 885.659 kb on - strandat 885.693 kb on + strandat 885.717 kb on + strandat 885.717 kb on + strandat 885.718 kb on - strandat 885.718 kb on - strandat 885.718 kb on - strandat 885.718 kb on - strandat 885.745 kb on + strandat 885.791 kb on - strandat 885.844 kb on + strandat 885.871 kb on + strandat 885.888 kb on + strandat 885.889 kb on - strandat 885.911 kb on + strandat 885.957 kb on + strandat 885.958 kb on - strandat 886.069 kb on - strand, within IAI46_04110at 886.069 kb on - strand, within IAI46_04110at 886.157 kb on - strand, within IAI46_04110at 886.248 kb on - strand, within IAI46_04110at 886.361 kb on - strand, within IAI46_04110at 886.420 kb on + strand, within IAI46_04110at 886.421 kb on - strand, within IAI46_04110at 886.506 kb on + strand, within IAI46_04110

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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883,571 + IAI46_04095 0.53 -0.1
883,571 + IAI46_04095 0.53 +0.3
883,572 - IAI46_04095 0.53 -0.1
883,738 - IAI46_04095 0.88 -0.4
883,778 - +0.8
883,842 + -0.2
883,878 + IAI46_04100 0.12 +0.0
883,878 + IAI46_04100 0.12 +1.7
883,879 - IAI46_04100 0.12 -0.1
883,887 - IAI46_04100 0.13 +0.1
883,887 - IAI46_04100 0.13 +1.1
883,970 - IAI46_04100 0.25 -1.0
884,012 - IAI46_04100 0.30 -0.4
884,031 - IAI46_04100 0.33 +0.3
884,033 + IAI46_04100 0.33 +0.3
884,034 - IAI46_04100 0.33 -0.1
884,047 + IAI46_04100 0.35 -0.5
884,048 - IAI46_04100 0.35 -1.0
884,116 + IAI46_04100 0.45 -0.4
884,135 + IAI46_04100 0.47 +0.2
884,135 + IAI46_04100 0.47 +0.1
884,136 - IAI46_04100 0.47 -0.7
884,241 + IAI46_04100 0.62 +0.0
884,242 - IAI46_04100 0.62 -0.7
884,246 + IAI46_04100 0.62 -0.3
884,246 + IAI46_04100 0.62 +0.6
884,247 - IAI46_04100 0.62 +0.6
884,281 + IAI46_04100 0.67 +0.8
884,410 + IAI46_04100 0.85 +0.8
884,411 - IAI46_04100 0.85 +0.1
884,481 + +0.3
884,482 - -1.2
884,503 + +0.1
884,517 + -0.3
884,517 + -0.8
884,517 + +1.0
884,518 - -0.7
884,571 + +0.8
884,572 - +0.9
884,623 + +0.0
884,624 - +0.1
884,644 + IAI46_04105 0.10 +0.2
884,645 - IAI46_04105 0.10 +0.1
884,690 + IAI46_04105 0.14 -0.2
884,691 - IAI46_04105 0.14 -0.2
884,706 + IAI46_04105 0.15 +1.3
884,706 + IAI46_04105 0.15 +0.1
884,706 + IAI46_04105 0.15 -0.1
884,707 - IAI46_04105 0.15 +0.7
884,718 + IAI46_04105 0.16 -0.4
884,870 - IAI46_04105 0.29 -0.0
884,907 + IAI46_04105 0.32 +0.1
884,910 + IAI46_04105 0.32 +0.5
884,910 + IAI46_04105 0.32 +0.1
884,923 + IAI46_04105 0.33 +0.8
884,923 + IAI46_04105 0.33 -0.7
884,923 + IAI46_04105 0.33 -0.0
884,924 - IAI46_04105 0.33 -0.1
884,924 - IAI46_04105 0.33 +0.2
884,924 - IAI46_04105 0.33 -0.8
884,924 - IAI46_04105 0.33 -0.2
885,043 + IAI46_04105 0.43 +0.3
885,043 + IAI46_04105 0.43 +0.6
885,043 + IAI46_04105 0.43 +1.0
885,044 - IAI46_04105 0.43 +0.5
885,044 - IAI46_04105 0.43 -1.9
885,044 - IAI46_04105 0.43 -0.0
885,207 - IAI46_04105 0.56 +0.2
885,228 + IAI46_04105 0.58 +0.3
885,228 + IAI46_04105 0.58 +0.3
885,228 + IAI46_04105 0.58 +0.3
885,228 + IAI46_04105 0.58 -0.1
885,229 - IAI46_04105 0.58 +0.4
885,280 + IAI46_04105 0.62 +0.2
885,281 - IAI46_04105 0.62 +0.7
885,324 + IAI46_04105 0.66 +0.2
885,324 + IAI46_04105 0.66 +0.4
885,324 + IAI46_04105 0.66 +0.6
885,324 + IAI46_04105 0.66 -0.1
885,325 - IAI46_04105 0.66 -0.1
885,410 - IAI46_04105 0.73 -0.5
885,410 - IAI46_04105 0.73 +0.3
885,412 - IAI46_04105 0.73 -0.1
885,412 - IAI46_04105 0.73 -0.5
885,659 - +0.0
885,693 + -0.2
885,717 + +0.6
885,717 + +0.9
885,718 - +0.1
885,718 - +0.2
885,718 - +0.6
885,718 - +1.2
885,745 + -0.4
885,791 - +0.3
885,844 + +0.9
885,871 + -0.6
885,888 + +0.1
885,889 - +0.1
885,911 + -0.3
885,957 + -0.9
885,958 - -0.3
886,069 - IAI46_04110 0.22 -0.2
886,069 - IAI46_04110 0.22 +0.2
886,157 - IAI46_04110 0.33 -0.5
886,248 - IAI46_04110 0.45 -0.1
886,361 - IAI46_04110 0.59 +2.2
886,420 + IAI46_04110 0.66 +0.5
886,421 - IAI46_04110 0.66 +0.3
886,506 + IAI46_04110 0.77 -1.5

Or see this region's nucleotide sequence