Strain Fitness in Serratia liquefaciens MT49 around IAI46_03770

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03765 and IAI46_03770 are separated by 202 nucleotidesIAI46_03770 and IAI46_03775 are separated by 107 nucleotidesIAI46_03775 and IAI46_03780 overlap by 7 nucleotides IAI46_03765: IAI46_03765 - tRNA pseudouridine(13) synthase TruD, at 818,395 to 819,441 _03765 IAI46_03770: IAI46_03770 - acyltransferase, at 819,644 to 820,924 _03770 IAI46_03775: IAI46_03775 - 5'/3'-nucleotidase SurE, at 821,032 to 821,793 _03775 IAI46_03780: IAI46_03780 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 821,787 to 822,413 _03780 Position (kb) 819 820 821Strain fitness (log2 ratio) -2 -1 0 1 2at 818.785 kb on - strand, within IAI46_03765at 818.802 kb on + strand, within IAI46_03765at 818.803 kb on - strand, within IAI46_03765at 818.823 kb on - strand, within IAI46_03765at 818.859 kb on - strand, within IAI46_03765at 818.867 kb on - strand, within IAI46_03765at 818.971 kb on + strand, within IAI46_03765at 818.972 kb on - strand, within IAI46_03765at 819.000 kb on + strand, within IAI46_03765at 819.001 kb on - strand, within IAI46_03765at 819.042 kb on + strand, within IAI46_03765at 819.312 kb on + strand, within IAI46_03765at 819.313 kb on - strand, within IAI46_03765at 819.313 kb on - strand, within IAI46_03765at 819.417 kb on + strandat 819.418 kb on - strandat 819.433 kb on - strandat 819.442 kb on + strandat 819.442 kb on + strandat 819.442 kb on + strandat 819.590 kb on + strandat 819.592 kb on + strandat 819.592 kb on + strandat 819.871 kb on + strand, within IAI46_03770at 819.871 kb on + strand, within IAI46_03770at 819.872 kb on - strand, within IAI46_03770at 819.872 kb on - strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.875 kb on + strand, within IAI46_03770at 819.876 kb on - strand, within IAI46_03770at 819.877 kb on + strand, within IAI46_03770at 819.882 kb on + strand, within IAI46_03770at 819.883 kb on - strand, within IAI46_03770at 819.892 kb on - strand, within IAI46_03770at 819.899 kb on - strand, within IAI46_03770at 819.995 kb on - strand, within IAI46_03770at 819.999 kb on - strand, within IAI46_03770at 820.037 kb on + strand, within IAI46_03770at 820.038 kb on - strand, within IAI46_03770at 820.041 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.043 kb on + strand, within IAI46_03770at 820.044 kb on - strand, within IAI46_03770at 820.084 kb on + strand, within IAI46_03770at 820.103 kb on - strand, within IAI46_03770at 820.175 kb on - strand, within IAI46_03770at 820.201 kb on - strand, within IAI46_03770at 820.242 kb on + strand, within IAI46_03770at 820.244 kb on + strand, within IAI46_03770at 820.245 kb on - strand, within IAI46_03770at 820.263 kb on - strand, within IAI46_03770at 820.283 kb on - strand, within IAI46_03770at 820.394 kb on - strand, within IAI46_03770at 820.430 kb on - strand, within IAI46_03770at 820.471 kb on - strand, within IAI46_03770at 820.471 kb on - strand, within IAI46_03770at 820.484 kb on + strand, within IAI46_03770at 820.502 kb on - strand, within IAI46_03770at 820.513 kb on - strand, within IAI46_03770at 820.516 kb on + strand, within IAI46_03770at 820.516 kb on + strand, within IAI46_03770at 820.517 kb on - strand, within IAI46_03770at 820.517 kb on - strand, within IAI46_03770at 820.517 kb on - strand, within IAI46_03770at 820.582 kb on - strand, within IAI46_03770at 820.595 kb on + strand, within IAI46_03770at 820.596 kb on - strand, within IAI46_03770at 820.612 kb on + strand, within IAI46_03770at 820.657 kb on + strand, within IAI46_03770at 820.657 kb on + strand, within IAI46_03770at 820.658 kb on - strand, within IAI46_03770at 820.666 kb on + strand, within IAI46_03770at 820.667 kb on - strand, within IAI46_03770at 820.731 kb on - strand, within IAI46_03770at 820.731 kb on - strand, within IAI46_03770at 820.735 kb on - strand, within IAI46_03770at 820.740 kb on - strand, within IAI46_03770at 820.746 kb on - strand, within IAI46_03770at 820.810 kb on + strandat 820.925 kb on - strandat 820.927 kb on + strandat 820.928 kb on - strandat 820.928 kb on - strandat 820.938 kb on + strandat 820.969 kb on + strandat 820.969 kb on + strandat 820.973 kb on + strandat 820.974 kb on - strandat 820.974 kb on - strandat 821.012 kb on + strandat 821.031 kb on + strandat 821.219 kb on + strand, within IAI46_03775at 821.219 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.246 kb on + strand, within IAI46_03775at 821.249 kb on - strand, within IAI46_03775at 821.339 kb on - strand, within IAI46_03775at 821.422 kb on + strand, within IAI46_03775at 821.422 kb on + strand, within IAI46_03775at 821.423 kb on - strand, within IAI46_03775at 821.423 kb on - strand, within IAI46_03775at 821.502 kb on + strand, within IAI46_03775at 821.503 kb on - strand, within IAI46_03775at 821.534 kb on + strand, within IAI46_03775at 821.535 kb on - strand, within IAI46_03775at 821.681 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.692 kb on + strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.693 kb on - strand, within IAI46_03775at 821.704 kb on - strand, within IAI46_03775at 821.732 kb on - strandat 821.732 kb on - strandat 821.747 kb on + strandat 821.751 kb on - strandat 821.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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818,785 - IAI46_03765 0.37 +0.3
818,802 + IAI46_03765 0.39 +0.3
818,803 - IAI46_03765 0.39 -0.1
818,823 - IAI46_03765 0.41 +0.3
818,859 - IAI46_03765 0.44 +0.4
818,867 - IAI46_03765 0.45 +0.7
818,971 + IAI46_03765 0.55 -0.1
818,972 - IAI46_03765 0.55 -0.4
819,000 + IAI46_03765 0.58 +0.4
819,001 - IAI46_03765 0.58 -0.1
819,042 + IAI46_03765 0.62 -0.0
819,312 + IAI46_03765 0.88 +0.7
819,313 - IAI46_03765 0.88 -0.1
819,313 - IAI46_03765 0.88 +0.2
819,417 + +0.7
819,418 - +1.0
819,433 - +0.3
819,442 + +0.8
819,442 + +0.0
819,442 + -0.1
819,590 + +0.5
819,592 + +0.7
819,592 + +0.4
819,871 + IAI46_03770 0.18 +0.2
819,871 + IAI46_03770 0.18 -0.4
819,872 - IAI46_03770 0.18 -0.3
819,872 - IAI46_03770 0.18 +2.0
819,875 + IAI46_03770 0.18 +1.0
819,875 + IAI46_03770 0.18 -0.1
819,875 + IAI46_03770 0.18 +0.8
819,875 + IAI46_03770 0.18 -0.1
819,875 + IAI46_03770 0.18 -0.0
819,875 + IAI46_03770 0.18 +0.0
819,876 - IAI46_03770 0.18 +0.2
819,877 + IAI46_03770 0.18 +0.5
819,882 + IAI46_03770 0.19 -0.1
819,883 - IAI46_03770 0.19 +1.0
819,892 - IAI46_03770 0.19 +0.3
819,899 - IAI46_03770 0.20 -0.7
819,995 - IAI46_03770 0.27 +0.0
819,999 - IAI46_03770 0.28 -0.2
820,037 + IAI46_03770 0.31 -0.8
820,038 - IAI46_03770 0.31 -0.3
820,041 + IAI46_03770 0.31 +0.5
820,043 + IAI46_03770 0.31 -0.7
820,043 + IAI46_03770 0.31 +0.8
820,043 + IAI46_03770 0.31 -0.8
820,044 - IAI46_03770 0.31 -0.8
820,084 + IAI46_03770 0.34 -0.1
820,103 - IAI46_03770 0.36 -0.4
820,175 - IAI46_03770 0.41 +0.7
820,201 - IAI46_03770 0.43 +0.7
820,242 + IAI46_03770 0.47 -0.1
820,244 + IAI46_03770 0.47 -0.6
820,245 - IAI46_03770 0.47 -0.2
820,263 - IAI46_03770 0.48 -0.2
820,283 - IAI46_03770 0.50 +0.3
820,394 - IAI46_03770 0.59 +0.4
820,430 - IAI46_03770 0.61 +0.1
820,471 - IAI46_03770 0.65 +0.2
820,471 - IAI46_03770 0.65 -0.0
820,484 + IAI46_03770 0.66 -0.4
820,502 - IAI46_03770 0.67 -0.3
820,513 - IAI46_03770 0.68 +0.5
820,516 + IAI46_03770 0.68 +0.4
820,516 + IAI46_03770 0.68 -0.3
820,517 - IAI46_03770 0.68 -0.4
820,517 - IAI46_03770 0.68 +0.2
820,517 - IAI46_03770 0.68 -1.5
820,582 - IAI46_03770 0.73 +1.3
820,595 + IAI46_03770 0.74 +0.3
820,596 - IAI46_03770 0.74 -0.0
820,612 + IAI46_03770 0.76 +0.4
820,657 + IAI46_03770 0.79 +0.2
820,657 + IAI46_03770 0.79 +0.6
820,658 - IAI46_03770 0.79 +1.4
820,666 + IAI46_03770 0.80 +0.2
820,667 - IAI46_03770 0.80 -0.1
820,731 - IAI46_03770 0.85 -1.9
820,731 - IAI46_03770 0.85 +1.0
820,735 - IAI46_03770 0.85 -0.2
820,740 - IAI46_03770 0.86 +0.1
820,746 - IAI46_03770 0.86 +0.2
820,810 + -0.8
820,925 - +0.4
820,927 + +0.4
820,928 - +0.2
820,928 - +0.8
820,938 + -1.2
820,969 + -0.2
820,969 + +0.4
820,973 + -0.1
820,974 - +0.3
820,974 - +0.5
821,012 + +1.1
821,031 + -0.3
821,219 + IAI46_03775 0.25 +0.0
821,219 + IAI46_03775 0.25 +0.2
821,246 + IAI46_03775 0.28 -0.0
821,246 + IAI46_03775 0.28 +0.4
821,246 + IAI46_03775 0.28 +0.3
821,249 - IAI46_03775 0.28 -0.1
821,339 - IAI46_03775 0.40 -0.8
821,422 + IAI46_03775 0.51 +1.1
821,422 + IAI46_03775 0.51 +0.0
821,423 - IAI46_03775 0.51 -0.2
821,423 - IAI46_03775 0.51 -1.4
821,502 + IAI46_03775 0.62 -0.4
821,503 - IAI46_03775 0.62 +0.3
821,534 + IAI46_03775 0.66 +1.0
821,535 - IAI46_03775 0.66 +1.0
821,681 + IAI46_03775 0.85 -1.3
821,692 + IAI46_03775 0.87 +0.5
821,692 + IAI46_03775 0.87 +0.3
821,692 + IAI46_03775 0.87 +0.5
821,692 + IAI46_03775 0.87 -0.2
821,693 - IAI46_03775 0.87 -0.0
821,693 - IAI46_03775 0.87 +1.5
821,693 - IAI46_03775 0.87 -0.5
821,693 - IAI46_03775 0.87 -0.1
821,693 - IAI46_03775 0.87 -0.4
821,704 - IAI46_03775 0.88 +0.0
821,732 - +1.0
821,732 - -0.2
821,747 + -0.8
821,751 - +0.6
821,801 + -0.9

Or see this region's nucleotide sequence