Strain Fitness in Serratia liquefaciens MT49 around IAI46_03740

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03730 and IAI46_03735 are separated by 52 nucleotidesIAI46_03735 and IAI46_03740 overlap by 17 nucleotidesIAI46_03740 and IAI46_03745 are separated by 101 nucleotides IAI46_03730: IAI46_03730 - DUF3561 family protein, at 813,801 to 814,118 _03730 IAI46_03735: IAI46_03735 - amino acid ABC transporter ATP-binding protein, at 814,171 to 814,893 _03735 IAI46_03740: IAI46_03740 - amino acid ABC transporter permease, at 814,877 to 815,596 _03740 IAI46_03745: IAI46_03745 - basic amino acid ABC transporter substrate-binding protein, at 815,698 to 816,468 _03745 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2at 813.957 kb on + strand, within IAI46_03730at 813.957 kb on + strand, within IAI46_03730at 813.958 kb on - strand, within IAI46_03730at 813.958 kb on - strand, within IAI46_03730at 814.047 kb on - strand, within IAI46_03730at 814.268 kb on + strand, within IAI46_03735at 814.552 kb on + strand, within IAI46_03735at 814.553 kb on - strand, within IAI46_03735at 814.636 kb on - strand, within IAI46_03735at 814.770 kb on + strand, within IAI46_03735at 814.777 kb on - strand, within IAI46_03735at 814.777 kb on - strand, within IAI46_03735at 814.878 kb on + strandat 814.878 kb on + strandat 814.879 kb on - strandat 814.882 kb on + strandat 814.883 kb on - strandat 814.883 kb on - strandat 814.957 kb on - strand, within IAI46_03740at 814.957 kb on - strand, within IAI46_03740at 814.989 kb on + strand, within IAI46_03740at 814.990 kb on - strand, within IAI46_03740at 814.998 kb on + strand, within IAI46_03740at 814.998 kb on + strand, within IAI46_03740at 815.203 kb on + strand, within IAI46_03740at 815.203 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.238 kb on + strand, within IAI46_03740at 815.239 kb on - strand, within IAI46_03740at 815.239 kb on - strand, within IAI46_03740at 815.239 kb on - strand, within IAI46_03740at 815.258 kb on - strand, within IAI46_03740at 815.258 kb on - strand, within IAI46_03740at 815.365 kb on + strand, within IAI46_03740at 815.366 kb on - strand, within IAI46_03740at 815.419 kb on + strand, within IAI46_03740at 815.439 kb on + strand, within IAI46_03740at 815.439 kb on + strand, within IAI46_03740at 815.439 kb on + strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.440 kb on - strand, within IAI46_03740at 815.466 kb on + strand, within IAI46_03740at 815.560 kb on + strandat 815.560 kb on + strandat 815.560 kb on + strandat 815.561 kb on - strandat 815.561 kb on - strandat 815.562 kb on - strandat 815.622 kb on - strandat 815.622 kb on - strandat 815.622 kb on - strandat 815.656 kb on + strandat 815.699 kb on + strandat 815.745 kb on - strandat 815.756 kb on + strandat 815.756 kb on + strandat 815.844 kb on - strand, within IAI46_03745at 815.904 kb on + strand, within IAI46_03745at 815.906 kb on + strand, within IAI46_03745at 815.906 kb on + strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.907 kb on - strand, within IAI46_03745at 815.947 kb on - strand, within IAI46_03745at 815.957 kb on + strand, within IAI46_03745at 815.983 kb on - strand, within IAI46_03745at 816.020 kb on - strand, within IAI46_03745at 816.062 kb on - strand, within IAI46_03745at 816.062 kb on - strand, within IAI46_03745at 816.244 kb on - strand, within IAI46_03745at 816.259 kb on - strand, within IAI46_03745at 816.310 kb on - strand, within IAI46_03745at 816.314 kb on - strand, within IAI46_03745at 816.316 kb on - strand, within IAI46_03745at 816.354 kb on - strand, within IAI46_03745at 816.365 kb on + strand, within IAI46_03745at 816.365 kb on + strand, within IAI46_03745at 816.366 kb on - strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.389 kb on + strand, within IAI46_03745at 816.390 kb on - strand, within IAI46_03745at 816.393 kb on + strandat 816.393 kb on + strandat 816.393 kb on + strandat 816.394 kb on - strandat 816.454 kb on + strandat 816.463 kb on - strandat 816.516 kb on + strandat 816.561 kb on + strandat 816.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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813,957 + IAI46_03730 0.49 -0.7
813,957 + IAI46_03730 0.49 +0.5
813,958 - IAI46_03730 0.49 -0.3
813,958 - IAI46_03730 0.49 +0.0
814,047 - IAI46_03730 0.77 -0.1
814,268 + IAI46_03735 0.13 +2.0
814,552 + IAI46_03735 0.53 -0.3
814,553 - IAI46_03735 0.53 -0.7
814,636 - IAI46_03735 0.64 +0.9
814,770 + IAI46_03735 0.83 +0.2
814,777 - IAI46_03735 0.84 -0.9
814,777 - IAI46_03735 0.84 +1.2
814,878 + -0.5
814,878 + -1.5
814,879 - -1.2
814,882 + +0.1
814,883 - -0.7
814,883 - -0.2
814,957 - IAI46_03740 0.11 +0.3
814,957 - IAI46_03740 0.11 -0.5
814,989 + IAI46_03740 0.16 +1.2
814,990 - IAI46_03740 0.16 -0.9
814,998 + IAI46_03740 0.17 +0.4
814,998 + IAI46_03740 0.17 -0.0
815,203 + IAI46_03740 0.45 +1.3
815,203 + IAI46_03740 0.45 -0.4
815,238 + IAI46_03740 0.50 +0.5
815,238 + IAI46_03740 0.50 -0.7
815,238 + IAI46_03740 0.50 -1.1
815,238 + IAI46_03740 0.50 -0.3
815,238 + IAI46_03740 0.50 -0.6
815,238 + IAI46_03740 0.50 -0.0
815,239 - IAI46_03740 0.50 -0.4
815,239 - IAI46_03740 0.50 +0.6
815,239 - IAI46_03740 0.50 +0.9
815,258 - IAI46_03740 0.53 +0.2
815,258 - IAI46_03740 0.53 -0.4
815,365 + IAI46_03740 0.68 +0.2
815,366 - IAI46_03740 0.68 -0.1
815,419 + IAI46_03740 0.75 -0.0
815,439 + IAI46_03740 0.78 +0.2
815,439 + IAI46_03740 0.78 +1.0
815,439 + IAI46_03740 0.78 +0.4
815,440 - IAI46_03740 0.78 +1.7
815,440 - IAI46_03740 0.78 +0.1
815,440 - IAI46_03740 0.78 +0.7
815,440 - IAI46_03740 0.78 +2.6
815,466 + IAI46_03740 0.82 +0.5
815,560 + +0.0
815,560 + +0.7
815,560 + +0.3
815,561 - -1.8
815,561 - -0.1
815,562 - +0.5
815,622 - +0.4
815,622 - +0.4
815,622 - -0.4
815,656 + -0.3
815,699 + +0.9
815,745 - +0.4
815,756 + +0.2
815,756 + -0.8
815,844 - IAI46_03745 0.19 +0.4
815,904 + IAI46_03745 0.27 +1.1
815,906 + IAI46_03745 0.27 +0.7
815,906 + IAI46_03745 0.27 +0.1
815,907 - IAI46_03745 0.27 +0.4
815,907 - IAI46_03745 0.27 -0.4
815,907 - IAI46_03745 0.27 +2.0
815,907 - IAI46_03745 0.27 +0.1
815,947 - IAI46_03745 0.32 +0.5
815,957 + IAI46_03745 0.34 -0.0
815,983 - IAI46_03745 0.37 +0.2
816,020 - IAI46_03745 0.42 -0.9
816,062 - IAI46_03745 0.47 +0.2
816,062 - IAI46_03745 0.47 -0.7
816,244 - IAI46_03745 0.71 -0.0
816,259 - IAI46_03745 0.73 -0.0
816,310 - IAI46_03745 0.79 -0.4
816,314 - IAI46_03745 0.80 +0.0
816,316 - IAI46_03745 0.80 +1.0
816,354 - IAI46_03745 0.85 +0.6
816,365 + IAI46_03745 0.87 -0.7
816,365 + IAI46_03745 0.87 +1.2
816,366 - IAI46_03745 0.87 +0.8
816,389 + IAI46_03745 0.90 +0.4
816,389 + IAI46_03745 0.90 -0.8
816,389 + IAI46_03745 0.90 +0.6
816,389 + IAI46_03745 0.90 -0.5
816,389 + IAI46_03745 0.90 +0.4
816,390 - IAI46_03745 0.90 +0.3
816,393 + +0.0
816,393 + -0.6
816,393 + -0.1
816,394 - +0.6
816,454 + -0.6
816,463 - -0.6
816,516 + +0.7
816,561 + +0.4
816,590 - -0.2

Or see this region's nucleotide sequence