Strain Fitness in Serratia liquefaciens MT49 around IAI46_03630

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03620 and IAI46_03625 are separated by 10 nucleotidesIAI46_03625 and IAI46_03630 are separated by 46 nucleotidesIAI46_03630 and IAI46_03635 are separated by 34 nucleotides IAI46_03620: IAI46_03620 - NAD(P)/FAD-dependent oxidoreductase, at 787,601 to 788,791 _03620 IAI46_03625: IAI46_03625 - hypothetical protein, at 788,802 to 789,173 _03625 IAI46_03630: IAI46_03630 - methionine gamma-lyase, at 789,220 to 790,410 _03630 IAI46_03635: IAI46_03635 - histidine ammonia-lyase, at 790,445 to 791,968 _03635 Position (kb) 789 790 791Strain fitness (log2 ratio) -1 0 1 2at 788.296 kb on + strand, within IAI46_03620at 788.365 kb on + strand, within IAI46_03620at 788.365 kb on + strand, within IAI46_03620at 788.481 kb on - strand, within IAI46_03620at 788.481 kb on - strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.512 kb on + strand, within IAI46_03620at 788.621 kb on + strand, within IAI46_03620at 788.682 kb on - strandat 788.682 kb on - strandat 788.750 kb on - strandat 788.848 kb on + strand, within IAI46_03625at 788.848 kb on + strand, within IAI46_03625at 788.849 kb on - strand, within IAI46_03625at 788.849 kb on - strand, within IAI46_03625at 789.064 kb on - strand, within IAI46_03625at 789.064 kb on - strand, within IAI46_03625at 789.117 kb on - strand, within IAI46_03625at 789.140 kb on + strandat 789.140 kb on + strandat 789.180 kb on + strandat 789.180 kb on + strandat 789.181 kb on - strandat 789.181 kb on - strandat 789.208 kb on + strandat 789.272 kb on - strandat 789.286 kb on + strandat 789.315 kb on + strandat 789.331 kb on - strandat 789.349 kb on + strand, within IAI46_03630at 789.349 kb on + strand, within IAI46_03630at 789.350 kb on - strand, within IAI46_03630at 789.350 kb on - strand, within IAI46_03630at 789.484 kb on - strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.680 kb on - strand, within IAI46_03630at 789.775 kb on - strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.825 kb on + strand, within IAI46_03630at 789.826 kb on - strand, within IAI46_03630at 789.826 kb on - strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.827 kb on + strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.828 kb on - strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.850 kb on + strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.851 kb on - strand, within IAI46_03630at 789.923 kb on + strand, within IAI46_03630at 790.012 kb on - strand, within IAI46_03630at 790.074 kb on - strand, within IAI46_03630at 790.085 kb on - strand, within IAI46_03630at 790.085 kb on - strand, within IAI46_03630at 790.115 kb on - strand, within IAI46_03630at 790.115 kb on - strand, within IAI46_03630at 790.320 kb on + strandat 790.321 kb on - strandat 790.408 kb on + strandat 790.409 kb on - strandat 790.409 kb on - strandat 790.446 kb on + strandat 790.447 kb on - strandat 790.447 kb on - strandat 790.550 kb on + strandat 790.681 kb on + strand, within IAI46_03635at 790.682 kb on - strand, within IAI46_03635at 790.682 kb on - strand, within IAI46_03635at 790.682 kb on - strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.746 kb on + strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.747 kb on - strand, within IAI46_03635at 790.750 kb on + strand, within IAI46_03635at 790.757 kb on + strand, within IAI46_03635at 790.758 kb on - strand, within IAI46_03635at 790.809 kb on + strand, within IAI46_03635at 790.809 kb on + strand, within IAI46_03635at 791.119 kb on + strand, within IAI46_03635at 791.119 kb on + strand, within IAI46_03635

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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788,296 + IAI46_03620 0.58 +0.4
788,365 + IAI46_03620 0.64 -0.9
788,365 + IAI46_03620 0.64 -0.1
788,481 - IAI46_03620 0.74 +0.0
788,481 - IAI46_03620 0.74 +0.0
788,498 + IAI46_03620 0.75 -0.1
788,498 + IAI46_03620 0.75 +0.7
788,498 + IAI46_03620 0.75 +2.0
788,498 + IAI46_03620 0.75 +1.2
788,498 + IAI46_03620 0.75 +0.6
788,498 + IAI46_03620 0.75 +0.2
788,499 - IAI46_03620 0.75 +0.1
788,499 - IAI46_03620 0.75 -1.0
788,499 - IAI46_03620 0.75 +0.5
788,499 - IAI46_03620 0.75 -0.7
788,499 - IAI46_03620 0.75 +0.6
788,499 - IAI46_03620 0.75 +0.3
788,499 - IAI46_03620 0.75 -0.7
788,499 - IAI46_03620 0.75 +0.3
788,512 + IAI46_03620 0.76 +0.4
788,621 + IAI46_03620 0.86 +0.2
788,682 - -0.2
788,682 - +0.1
788,750 - -0.3
788,848 + IAI46_03625 0.12 +0.2
788,848 + IAI46_03625 0.12 +0.4
788,849 - IAI46_03625 0.13 -0.0
788,849 - IAI46_03625 0.13 -0.4
789,064 - IAI46_03625 0.70 -0.1
789,064 - IAI46_03625 0.70 -0.2
789,117 - IAI46_03625 0.85 +0.9
789,140 + -0.1
789,140 + +0.8
789,180 + -0.5
789,180 + -0.8
789,181 - +0.2
789,181 - +0.1
789,208 + +0.8
789,272 - -0.0
789,286 + +1.4
789,315 + -1.0
789,331 - +0.9
789,349 + IAI46_03630 0.11 +1.8
789,349 + IAI46_03630 0.11 +1.3
789,350 - IAI46_03630 0.11 +0.5
789,350 - IAI46_03630 0.11 -0.1
789,484 - IAI46_03630 0.22 +0.2
789,679 + IAI46_03630 0.39 +0.3
789,679 + IAI46_03630 0.39 +0.7
789,680 - IAI46_03630 0.39 -0.0
789,775 - IAI46_03630 0.47 +0.5
789,781 + IAI46_03630 0.47 -0.1
789,781 + IAI46_03630 0.47 +0.3
789,782 - IAI46_03630 0.47 +0.9
789,782 - IAI46_03630 0.47 +1.4
789,782 - IAI46_03630 0.47 +0.5
789,782 - IAI46_03630 0.47 +0.8
789,782 - IAI46_03630 0.47 +1.0
789,782 - IAI46_03630 0.47 +0.2
789,825 + IAI46_03630 0.51 -0.2
789,825 + IAI46_03630 0.51 +0.6
789,825 + IAI46_03630 0.51 +1.4
789,825 + IAI46_03630 0.51 -0.2
789,826 - IAI46_03630 0.51 -0.3
789,826 - IAI46_03630 0.51 +0.8
789,827 + IAI46_03630 0.51 -0.2
789,827 + IAI46_03630 0.51 -0.2
789,827 + IAI46_03630 0.51 -0.8
789,827 + IAI46_03630 0.51 -0.2
789,828 - IAI46_03630 0.51 -1.1
789,828 - IAI46_03630 0.51 +0.1
789,828 - IAI46_03630 0.51 -0.1
789,828 - IAI46_03630 0.51 +0.9
789,850 + IAI46_03630 0.53 +0.1
789,850 + IAI46_03630 0.53 +0.2
789,850 + IAI46_03630 0.53 +0.2
789,851 - IAI46_03630 0.53 -0.2
789,851 - IAI46_03630 0.53 +1.2
789,851 - IAI46_03630 0.53 +0.8
789,923 + IAI46_03630 0.59 -1.0
790,012 - IAI46_03630 0.66 +0.4
790,074 - IAI46_03630 0.72 +0.2
790,085 - IAI46_03630 0.73 +0.0
790,085 - IAI46_03630 0.73 -1.0
790,115 - IAI46_03630 0.75 -0.3
790,115 - IAI46_03630 0.75 +0.8
790,320 + +0.7
790,321 - +0.3
790,408 + -0.1
790,409 - +0.5
790,409 - -0.4
790,446 + -0.5
790,447 - +0.2
790,447 - +0.2
790,550 + -0.0
790,681 + IAI46_03635 0.15 +1.6
790,682 - IAI46_03635 0.16 -0.1
790,682 - IAI46_03635 0.16 -0.2
790,682 - IAI46_03635 0.16 +0.6
790,746 + IAI46_03635 0.20 +0.1
790,746 + IAI46_03635 0.20 +0.8
790,746 + IAI46_03635 0.20 +0.2
790,746 + IAI46_03635 0.20 -0.1
790,746 + IAI46_03635 0.20 +0.8
790,746 + IAI46_03635 0.20 -0.3
790,746 + IAI46_03635 0.20 -0.0
790,747 - IAI46_03635 0.20 -0.1
790,747 - IAI46_03635 0.20 +0.3
790,747 - IAI46_03635 0.20 -0.0
790,747 - IAI46_03635 0.20 -0.8
790,747 - IAI46_03635 0.20 +0.5
790,747 - IAI46_03635 0.20 +0.5
790,747 - IAI46_03635 0.20 +0.2
790,747 - IAI46_03635 0.20 +0.7
790,750 + IAI46_03635 0.20 +0.9
790,757 + IAI46_03635 0.20 +0.3
790,758 - IAI46_03635 0.21 +0.7
790,809 + IAI46_03635 0.24 +0.3
790,809 + IAI46_03635 0.24 +1.1
791,119 + IAI46_03635 0.44 -0.0
791,119 + IAI46_03635 0.44 +1.3

Or see this region's nucleotide sequence