Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03520 and IAI46_03525 overlap by 4 nucleotides IAI46_03525 and IAI46_03530 are separated by 199 nucleotides IAI46_03530 and IAI46_03535 are separated by 85 nucleotides IAI46_03535 and IAI46_03540 overlap by 1 nucleotides
IAI46_03520: IAI46_03520 - type II secretion system protein GspE, at 762,483 to 763,931
_03520
IAI46_03525: IAI46_03525 - prepilin peptidase-dependent pilin, at 763,928 to 764,377
_03525
IAI46_03530: IAI46_03530 - carboxylating nicotinate-nucleotide diphosphorylase, at 764,577 to 765,467
_03530
IAI46_03535: IAI46_03535 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 765,553 to 766,149
_03535
IAI46_03540: IAI46_03540 - beta-lactamase regulator AmpE, at 766,149 to 767,003
_03540
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 763.626 kb on + strand, within IAI46_03520 at 763.628 kb on + strand, within IAI46_03520 at 763.629 kb on - strand, within IAI46_03520 at 763.709 kb on + strand, within IAI46_03520 at 763.809 kb on + strand at 763.810 kb on - strand at 763.813 kb on - strand at 763.813 kb on - strand at 763.868 kb on + strand at 763.869 kb on - strand at 763.869 kb on - strand at 763.885 kb on + strand at 763.897 kb on - strand at 763.897 kb on - strand at 763.897 kb on - strand at 763.902 kb on - strand at 763.997 kb on - strand, within IAI46_03525 at 764.136 kb on + strand, within IAI46_03525 at 764.137 kb on - strand, within IAI46_03525 at 764.230 kb on + strand, within IAI46_03525 at 764.230 kb on + strand, within IAI46_03525 at 764.231 kb on - strand, within IAI46_03525 at 764.231 kb on - strand, within IAI46_03525 at 764.232 kb on + strand, within IAI46_03525 at 764.232 kb on + strand, within IAI46_03525 at 764.232 kb on + strand, within IAI46_03525 at 764.233 kb on - strand, within IAI46_03525 at 764.233 kb on - strand, within IAI46_03525 at 764.233 kb on - strand, within IAI46_03525 at 764.233 kb on - strand, within IAI46_03525 at 764.280 kb on + strand, within IAI46_03525 at 764.280 kb on + strand, within IAI46_03525 at 764.281 kb on - strand, within IAI46_03525 at 764.281 kb on - strand, within IAI46_03525 at 764.290 kb on - strand, within IAI46_03525 at 764.299 kb on + strand, within IAI46_03525 at 764.299 kb on + strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.300 kb on - strand, within IAI46_03525 at 764.303 kb on + strand, within IAI46_03525 at 764.303 kb on + strand, within IAI46_03525 at 764.303 kb on + strand, within IAI46_03525 at 764.303 kb on + strand, within IAI46_03525 at 764.304 kb on - strand, within IAI46_03525 at 764.304 kb on - strand, within IAI46_03525 at 764.304 kb on - strand, within IAI46_03525 at 764.304 kb on - strand, within IAI46_03525 at 764.315 kb on + strand, within IAI46_03525 at 764.315 kb on + strand, within IAI46_03525 at 764.316 kb on - strand, within IAI46_03525 at 764.348 kb on + strand at 764.348 kb on + strand at 764.413 kb on + strand at 764.413 kb on + strand at 764.456 kb on + strand at 764.578 kb on + strand at 764.579 kb on - strand at 764.579 kb on - strand at 764.579 kb on - strand at 764.639 kb on + strand at 764.640 kb on - strand at 764.640 kb on - strand at 764.640 kb on - strand at 764.640 kb on - strand at 764.642 kb on - strand at 764.774 kb on + strand, within IAI46_03530 at 764.774 kb on + strand, within IAI46_03530 at 764.774 kb on + strand, within IAI46_03530 at 764.774 kb on + strand, within IAI46_03530 at 764.775 kb on - strand, within IAI46_03530 at 764.775 kb on - strand, within IAI46_03530 at 764.901 kb on + strand, within IAI46_03530 at 764.971 kb on - strand, within IAI46_03530 at 764.977 kb on + strand, within IAI46_03530 at 765.079 kb on - strand, within IAI46_03530 at 765.182 kb on + strand, within IAI46_03530 at 765.183 kb on - strand, within IAI46_03530 at 765.395 kb on - strand at 765.402 kb on - strand at 765.451 kb on + strand at 765.451 kb on + strand at 765.511 kb on + strand at 765.511 kb on + strand at 765.511 kb on + strand at 765.511 kb on + strand at 765.511 kb on + strand at 765.512 kb on - strand at 765.512 kb on - strand at 765.512 kb on - strand at 765.512 kb on - strand at 765.512 kb on - strand at 765.512 kb on - strand at 765.531 kb on + strand at 765.531 kb on + strand at 765.531 kb on + strand at 765.532 kb on - strand at 765.532 kb on - strand at 765.561 kb on - strand at 765.657 kb on + strand, within IAI46_03535 at 765.691 kb on + strand, within IAI46_03535 at 765.691 kb on + strand, within IAI46_03535 at 765.692 kb on - strand, within IAI46_03535 at 765.692 kb on - strand, within IAI46_03535 at 765.692 kb on - strand, within IAI46_03535 at 765.692 kb on - strand, within IAI46_03535 at 765.715 kb on - strand, within IAI46_03535 at 765.761 kb on + strand, within IAI46_03535 at 765.761 kb on + strand, within IAI46_03535 at 765.812 kb on - strand, within IAI46_03535 at 765.876 kb on + strand, within IAI46_03535 at 765.941 kb on - strand, within IAI46_03535 at 765.941 kb on - strand, within IAI46_03535 at 766.018 kb on - strand, within IAI46_03535 at 766.018 kb on - strand, within IAI46_03535 at 766.035 kb on + strand, within IAI46_03535 at 766.036 kb on - strand, within IAI46_03535 at 766.070 kb on + strand, within IAI46_03535 at 766.071 kb on - strand, within IAI46_03535 at 766.072 kb on + strand, within IAI46_03535 at 766.072 kb on + strand, within IAI46_03535 at 766.113 kb on + strand at 766.113 kb on + strand at 766.113 kb on + strand at 766.114 kb on - strand at 766.161 kb on - strand at 766.169 kb on - strand at 766.169 kb on - strand at 766.193 kb on - strand at 766.240 kb on + strand, within IAI46_03540 at 766.241 kb on - strand, within IAI46_03540 at 766.241 kb on - strand, within IAI46_03540 at 766.241 kb on - strand, within IAI46_03540 at 766.282 kb on + strand, within IAI46_03540 at 766.283 kb on - strand, within IAI46_03540 at 766.351 kb on + strand, within IAI46_03540 at 766.351 kb on + strand, within IAI46_03540 at 766.351 kb on + strand, within IAI46_03540 at 766.413 kb on - strand, within IAI46_03540 at 766.428 kb on + strand, within IAI46_03540 at 766.429 kb on - strand, within IAI46_03540 at 766.429 kb on - strand, within IAI46_03540
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 763,626 + IAI46_03520 0.79 +0.9 763,628 + IAI46_03520 0.79 -0.3 763,629 - IAI46_03520 0.79 -0.9 763,709 + IAI46_03520 0.85 -0.9 763,809 + +0.1 763,810 - -0.2 763,813 - +0.2 763,813 - +0.3 763,868 + -0.5 763,869 - -0.1 763,869 - +1.1 763,885 + +0.7 763,897 - -0.6 763,897 - +0.0 763,897 - +1.7 763,902 - +0.7 763,997 - IAI46_03525 0.15 +0.8 764,136 + IAI46_03525 0.46 +0.8 764,137 - IAI46_03525 0.46 +0.1 764,230 + IAI46_03525 0.67 -0.4 764,230 + IAI46_03525 0.67 -0.1 764,231 - IAI46_03525 0.67 -0.1 764,231 - IAI46_03525 0.67 -1.0 764,232 + IAI46_03525 0.68 +0.2 764,232 + IAI46_03525 0.68 +1.0 764,232 + IAI46_03525 0.68 +0.5 764,233 - IAI46_03525 0.68 -0.1 764,233 - IAI46_03525 0.68 +0.8 764,233 - IAI46_03525 0.68 +0.3 764,233 - IAI46_03525 0.68 +0.5 764,280 + IAI46_03525 0.78 +0.2 764,280 + IAI46_03525 0.78 +0.6 764,281 - IAI46_03525 0.78 -0.7 764,281 - IAI46_03525 0.78 +0.1 764,290 - IAI46_03525 0.80 +0.1 764,299 + IAI46_03525 0.82 +0.6 764,299 + IAI46_03525 0.82 +0.7 764,300 - IAI46_03525 0.83 +0.7 764,300 - IAI46_03525 0.83 +0.3 764,300 - IAI46_03525 0.83 -1.3 764,300 - IAI46_03525 0.83 +0.4 764,300 - IAI46_03525 0.83 +0.1 764,300 - IAI46_03525 0.83 +0.1 764,300 - IAI46_03525 0.83 -0.1 764,303 + IAI46_03525 0.83 +0.2 764,303 + IAI46_03525 0.83 +0.7 764,303 + IAI46_03525 0.83 +0.4 764,303 + IAI46_03525 0.83 +0.7 764,304 - IAI46_03525 0.84 -1.2 764,304 - IAI46_03525 0.84 +0.1 764,304 - IAI46_03525 0.84 +0.6 764,304 - IAI46_03525 0.84 +0.1 764,315 + IAI46_03525 0.86 -0.4 764,315 + IAI46_03525 0.86 -0.3 764,316 - IAI46_03525 0.86 +0.2 764,348 + +0.2 764,348 + -1.1 764,413 + -0.1 764,413 + +1.6 764,456 + -0.4 764,578 + +0.3 764,579 - +0.4 764,579 - +0.8 764,579 - -0.3 764,639 + -0.3 764,640 - -0.9 764,640 - +0.0 764,640 - -1.7 764,640 - +1.2 764,642 - +0.6 764,774 + IAI46_03530 0.22 +0.3 764,774 + IAI46_03530 0.22 +1.0 764,774 + IAI46_03530 0.22 -1.0 764,774 + IAI46_03530 0.22 -1.0 764,775 - IAI46_03530 0.22 +0.2 764,775 - IAI46_03530 0.22 -0.3 764,901 + IAI46_03530 0.36 -0.2 764,971 - IAI46_03530 0.44 +0.1 764,977 + IAI46_03530 0.45 -0.2 765,079 - IAI46_03530 0.56 +0.6 765,182 + IAI46_03530 0.68 -0.4 765,183 - IAI46_03530 0.68 -2.1 765,395 - -0.5 765,402 - -0.6 765,451 + -1.3 765,451 + -0.1 765,511 + -0.1 765,511 + -0.0 765,511 + -0.3 765,511 + -0.5 765,511 + +0.1 765,512 - +0.2 765,512 - +0.2 765,512 - -0.2 765,512 - +1.7 765,512 - -0.3 765,512 - -2.3 765,531 + -0.4 765,531 + -0.2 765,531 + +0.3 765,532 - +0.8 765,532 - +0.6 765,561 - -0.4 765,657 + IAI46_03535 0.17 +0.8 765,691 + IAI46_03535 0.23 -0.2 765,691 + IAI46_03535 0.23 +0.9 765,692 - IAI46_03535 0.23 -0.0 765,692 - IAI46_03535 0.23 +0.0 765,692 - IAI46_03535 0.23 +0.2 765,692 - IAI46_03535 0.23 +0.7 765,715 - IAI46_03535 0.27 -1.2 765,761 + IAI46_03535 0.35 +0.9 765,761 + IAI46_03535 0.35 -0.2 765,812 - IAI46_03535 0.43 -0.6 765,876 + IAI46_03535 0.54 -0.1 765,941 - IAI46_03535 0.65 -0.6 765,941 - IAI46_03535 0.65 +0.8 766,018 - IAI46_03535 0.78 -0.8 766,018 - IAI46_03535 0.78 -0.1 766,035 + IAI46_03535 0.81 +0.1 766,036 - IAI46_03535 0.81 +0.4 766,070 + IAI46_03535 0.87 +0.6 766,071 - IAI46_03535 0.87 +0.3 766,072 + IAI46_03535 0.87 +0.8 766,072 + IAI46_03535 0.87 +0.4 766,113 + +0.7 766,113 + +0.4 766,113 + -1.4 766,114 - +0.5 766,161 - +0.4 766,169 - +0.3 766,169 - +0.2 766,193 - +0.4 766,240 + IAI46_03540 0.11 +0.1 766,241 - IAI46_03540 0.11 -0.2 766,241 - IAI46_03540 0.11 -0.1 766,241 - IAI46_03540 0.11 -0.1 766,282 + IAI46_03540 0.16 -0.1 766,283 - IAI46_03540 0.16 -0.6 766,351 + IAI46_03540 0.24 +0.1 766,351 + IAI46_03540 0.24 +0.2 766,351 + IAI46_03540 0.24 +0.2 766,413 - IAI46_03540 0.31 +0.5 766,428 + IAI46_03540 0.33 +1.1 766,429 - IAI46_03540 0.33 -0.9 766,429 - IAI46_03540 0.33 +0.5
Or see this region's nucleotide sequence