Strain Fitness in Serratia liquefaciens MT49 around IAI46_03375

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03370 and IAI46_03375 are separated by 322 nucleotidesIAI46_03375 and IAI46_03380 are separated by 2 nucleotidesIAI46_03380 and IAI46_03385 are separated by 216 nucleotides IAI46_03370: IAI46_03370 - long-chain fatty acid--CoA ligase, at 728,891 to 730,693 _03370 IAI46_03375: IAI46_03375 - acetolactate synthase 3 large subunit, at 731,016 to 732,734 _03375 IAI46_03380: IAI46_03380 - acetolactate synthase small subunit, at 732,737 to 733,228 _03380 IAI46_03385: IAI46_03385 - catabolite repressor/activator, at 733,445 to 734,449 _03385 Position (kb) 731 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 730.311 kb on - strand, within IAI46_03370at 730.311 kb on - strand, within IAI46_03370at 730.314 kb on + strand, within IAI46_03370at 730.314 kb on + strand, within IAI46_03370at 730.315 kb on - strand, within IAI46_03370at 730.315 kb on - strand, within IAI46_03370at 730.315 kb on - strand, within IAI46_03370at 730.315 kb on - strand, within IAI46_03370at 730.315 kb on - strand, within IAI46_03370at 730.315 kb on - strand, within IAI46_03370at 730.440 kb on - strand, within IAI46_03370at 730.440 kb on - strand, within IAI46_03370at 730.440 kb on - strand, within IAI46_03370at 730.498 kb on + strand, within IAI46_03370at 730.498 kb on + strand, within IAI46_03370at 730.498 kb on + strand, within IAI46_03370at 730.499 kb on - strand, within IAI46_03370at 730.573 kb on + strandat 730.639 kb on + strandat 730.659 kb on - strandat 730.683 kb on - strandat 730.683 kb on - strandat 730.683 kb on - strandat 730.691 kb on + strandat 730.692 kb on - strandat 730.692 kb on - strandat 730.692 kb on - strandat 730.753 kb on + strandat 730.755 kb on + strandat 730.755 kb on + strandat 730.755 kb on + strandat 730.755 kb on + strandat 730.756 kb on - strandat 730.756 kb on - strandat 730.792 kb on - strandat 730.900 kb on - strandat 730.911 kb on - strandat 730.911 kb on - strandat 730.923 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.993 kb on + strandat 730.994 kb on - strandat 730.994 kb on - strandat 730.994 kb on - strandat 730.994 kb on - strandat 730.997 kb on + strandat 730.997 kb on + strandat 730.997 kb on + strandat 730.998 kb on - strandat 730.998 kb on - strandat 731.080 kb on + strandat 731.081 kb on - strandat 731.112 kb on - strandat 731.115 kb on + strandat 731.116 kb on - strandat 731.116 kb on - strandat 731.116 kb on - strandat 731.116 kb on - strandat 731.129 kb on + strandat 731.130 kb on - strandat 731.152 kb on + strandat 731.153 kb on - strandat 731.183 kb on + strandat 731.184 kb on - strandat 731.184 kb on - strandat 731.196 kb on + strand, within IAI46_03375at 731.197 kb on - strand, within IAI46_03375at 731.197 kb on - strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.283 kb on + strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.284 kb on - strand, within IAI46_03375at 731.285 kb on + strand, within IAI46_03375at 731.426 kb on + strand, within IAI46_03375at 731.427 kb on - strand, within IAI46_03375at 731.454 kb on + strand, within IAI46_03375at 731.455 kb on - strand, within IAI46_03375at 731.525 kb on - strand, within IAI46_03375at 731.535 kb on + strand, within IAI46_03375at 731.536 kb on - strand, within IAI46_03375at 731.568 kb on + strand, within IAI46_03375at 731.568 kb on + strand, within IAI46_03375at 731.568 kb on + strand, within IAI46_03375at 731.568 kb on + strand, within IAI46_03375at 731.568 kb on + strand, within IAI46_03375at 731.569 kb on - strand, within IAI46_03375at 731.569 kb on - strand, within IAI46_03375at 731.569 kb on - strand, within IAI46_03375at 731.604 kb on - strand, within IAI46_03375at 731.645 kb on + strand, within IAI46_03375at 731.649 kb on + strand, within IAI46_03375at 731.650 kb on - strand, within IAI46_03375at 731.650 kb on - strand, within IAI46_03375at 731.650 kb on - strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.805 kb on + strand, within IAI46_03375at 731.806 kb on - strand, within IAI46_03375at 731.806 kb on - strand, within IAI46_03375at 731.806 kb on - strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.873 kb on + strand, within IAI46_03375at 731.874 kb on - strand, within IAI46_03375at 731.874 kb on - strand, within IAI46_03375at 731.895 kb on + strand, within IAI46_03375at 731.895 kb on + strand, within IAI46_03375at 731.915 kb on - strand, within IAI46_03375at 731.937 kb on - strand, within IAI46_03375at 732.074 kb on + strand, within IAI46_03375at 732.075 kb on - strand, within IAI46_03375at 732.183 kb on + strand, within IAI46_03375at 732.183 kb on + strand, within IAI46_03375at 732.188 kb on + strand, within IAI46_03375at 732.189 kb on - strand, within IAI46_03375at 732.189 kb on - strand, within IAI46_03375at 732.189 kb on - strand, within IAI46_03375at 732.228 kb on + strand, within IAI46_03375at 732.228 kb on + strand, within IAI46_03375at 732.228 kb on + strand, within IAI46_03375at 732.229 kb on - strand, within IAI46_03375at 732.229 kb on - strand, within IAI46_03375at 732.229 kb on - strand, within IAI46_03375at 732.232 kb on - strand, within IAI46_03375at 732.366 kb on - strand, within IAI46_03375at 732.405 kb on + strand, within IAI46_03375at 732.406 kb on - strand, within IAI46_03375at 732.424 kb on + strand, within IAI46_03375at 732.425 kb on - strand, within IAI46_03375at 732.425 kb on - strand, within IAI46_03375at 732.425 kb on - strand, within IAI46_03375at 732.434 kb on + strand, within IAI46_03375at 732.434 kb on + strand, within IAI46_03375at 732.437 kb on + strand, within IAI46_03375at 732.438 kb on - strand, within IAI46_03375at 732.444 kb on + strand, within IAI46_03375at 732.444 kb on + strand, within IAI46_03375at 732.445 kb on - strand, within IAI46_03375at 732.480 kb on + strand, within IAI46_03375at 732.481 kb on - strand, within IAI46_03375at 732.481 kb on - strand, within IAI46_03375at 732.481 kb on - strand, within IAI46_03375at 732.504 kb on + strand, within IAI46_03375at 732.504 kb on + strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.505 kb on - strand, within IAI46_03375at 732.507 kb on - strand, within IAI46_03375at 732.546 kb on + strand, within IAI46_03375at 732.572 kb on + strandat 732.631 kb on + strandat 732.670 kb on - strandat 732.818 kb on + strand, within IAI46_03380at 732.818 kb on + strand, within IAI46_03380at 732.818 kb on + strand, within IAI46_03380at 732.819 kb on - strand, within IAI46_03380at 732.859 kb on + strand, within IAI46_03380at 732.860 kb on - strand, within IAI46_03380at 732.860 kb on - strand, within IAI46_03380at 732.931 kb on + strand, within IAI46_03380at 732.931 kb on + strand, within IAI46_03380at 732.931 kb on + strand, within IAI46_03380at 733.094 kb on + strand, within IAI46_03380at 733.095 kb on - strand, within IAI46_03380at 733.213 kb on + strandat 733.245 kb on - strandat 733.329 kb on + strandat 733.330 kb on - strandat 733.333 kb on + strandat 733.349 kb on + strandat 733.490 kb on - strandat 733.499 kb on + strandat 733.499 kb on + strandat 733.527 kb on - strandat 733.541 kb on - strandat 733.583 kb on + strand, within IAI46_03385at 733.583 kb on + strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.584 kb on - strand, within IAI46_03385at 733.670 kb on + strand, within IAI46_03385at 733.671 kb on - strand, within IAI46_03385at 733.671 kb on - strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.688 kb on + strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385at 733.689 kb on - strand, within IAI46_03385

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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730,311 - IAI46_03370 0.79 +1.3
730,311 - IAI46_03370 0.79 +0.2
730,314 + IAI46_03370 0.79 +0.9
730,314 + IAI46_03370 0.79 +0.2
730,315 - IAI46_03370 0.79 -0.3
730,315 - IAI46_03370 0.79 +0.0
730,315 - IAI46_03370 0.79 +0.5
730,315 - IAI46_03370 0.79 +0.0
730,315 - IAI46_03370 0.79 -0.2
730,315 - IAI46_03370 0.79 +0.4
730,440 - IAI46_03370 0.86 -0.3
730,440 - IAI46_03370 0.86 +0.8
730,440 - IAI46_03370 0.86 +1.8
730,498 + IAI46_03370 0.89 +0.2
730,498 + IAI46_03370 0.89 -0.1
730,498 + IAI46_03370 0.89 +1.1
730,499 - IAI46_03370 0.89 -0.2
730,573 + +0.9
730,639 + -0.6
730,659 - +0.5
730,683 - +0.7
730,683 - +0.0
730,683 - +0.1
730,691 + -0.9
730,692 - -0.4
730,692 - -0.6
730,692 - +0.5
730,753 + +0.2
730,755 + +0.3
730,755 + +0.1
730,755 + -0.3
730,755 + +0.4
730,756 - -0.0
730,756 - -1.2
730,792 - -0.3
730,900 - +0.4
730,911 - +0.7
730,911 - +0.2
730,923 + -1.2
730,993 + -0.4
730,993 + +0.4
730,993 + -2.6
730,993 + -0.6
730,993 + -0.5
730,993 + +0.5
730,993 + -0.9
730,993 + +0.6
730,993 + +0.3
730,994 - +0.4
730,994 - -0.1
730,994 - +0.7
730,994 - +0.1
730,997 + -1.5
730,997 + +0.2
730,997 + +0.8
730,998 - +0.1
730,998 - +0.5
731,080 + +0.5
731,081 - +0.0
731,112 - -0.0
731,115 + -0.2
731,116 - +0.9
731,116 - +0.2
731,116 - +0.3
731,116 - +0.6
731,129 + +1.7
731,130 - +0.6
731,152 + -0.2
731,153 - +0.6
731,183 + +0.0
731,184 - -0.1
731,184 - +0.4
731,196 + IAI46_03375 0.10 +0.6
731,197 - IAI46_03375 0.11 +0.4
731,197 - IAI46_03375 0.11 +1.0
731,283 + IAI46_03375 0.16 -1.0
731,283 + IAI46_03375 0.16 -0.6
731,283 + IAI46_03375 0.16 +0.5
731,283 + IAI46_03375 0.16 -0.1
731,283 + IAI46_03375 0.16 +0.9
731,283 + IAI46_03375 0.16 +1.2
731,283 + IAI46_03375 0.16 +0.2
731,284 - IAI46_03375 0.16 +0.5
731,284 - IAI46_03375 0.16 -0.3
731,284 - IAI46_03375 0.16 -0.2
731,284 - IAI46_03375 0.16 -0.2
731,284 - IAI46_03375 0.16 +1.5
731,284 - IAI46_03375 0.16 +0.9
731,284 - IAI46_03375 0.16 +0.1
731,284 - IAI46_03375 0.16 +1.6
731,284 - IAI46_03375 0.16 +0.2
731,285 + IAI46_03375 0.16 -0.2
731,426 + IAI46_03375 0.24 +0.5
731,427 - IAI46_03375 0.24 -0.4
731,454 + IAI46_03375 0.25 +0.6
731,455 - IAI46_03375 0.26 +0.3
731,525 - IAI46_03375 0.30 -0.0
731,535 + IAI46_03375 0.30 +0.4
731,536 - IAI46_03375 0.30 -0.1
731,568 + IAI46_03375 0.32 -0.1
731,568 + IAI46_03375 0.32 -0.3
731,568 + IAI46_03375 0.32 +0.0
731,568 + IAI46_03375 0.32 -0.1
731,568 + IAI46_03375 0.32 +0.4
731,569 - IAI46_03375 0.32 +0.4
731,569 - IAI46_03375 0.32 -0.3
731,569 - IAI46_03375 0.32 -0.1
731,604 - IAI46_03375 0.34 +0.3
731,645 + IAI46_03375 0.37 +0.6
731,649 + IAI46_03375 0.37 +0.3
731,650 - IAI46_03375 0.37 -0.4
731,650 - IAI46_03375 0.37 +0.1
731,650 - IAI46_03375 0.37 -0.3
731,805 + IAI46_03375 0.46 -0.0
731,805 + IAI46_03375 0.46 +0.7
731,805 + IAI46_03375 0.46 -1.2
731,805 + IAI46_03375 0.46 +0.4
731,806 - IAI46_03375 0.46 +0.4
731,806 - IAI46_03375 0.46 +0.2
731,806 - IAI46_03375 0.46 +1.4
731,873 + IAI46_03375 0.50 +0.4
731,873 + IAI46_03375 0.50 +1.5
731,873 + IAI46_03375 0.50 +0.1
731,873 + IAI46_03375 0.50 +0.5
731,874 - IAI46_03375 0.50 -0.7
731,874 - IAI46_03375 0.50 +0.2
731,895 + IAI46_03375 0.51 +0.6
731,895 + IAI46_03375 0.51 +0.9
731,915 - IAI46_03375 0.52 -0.3
731,937 - IAI46_03375 0.54 +0.0
732,074 + IAI46_03375 0.62 -0.3
732,075 - IAI46_03375 0.62 -0.4
732,183 + IAI46_03375 0.68 -0.2
732,183 + IAI46_03375 0.68 +0.4
732,188 + IAI46_03375 0.68 +0.2
732,189 - IAI46_03375 0.68 -0.2
732,189 - IAI46_03375 0.68 +0.5
732,189 - IAI46_03375 0.68 +0.8
732,228 + IAI46_03375 0.71 +0.5
732,228 + IAI46_03375 0.71 +0.5
732,228 + IAI46_03375 0.71 +1.4
732,229 - IAI46_03375 0.71 +0.2
732,229 - IAI46_03375 0.71 +0.1
732,229 - IAI46_03375 0.71 -0.3
732,232 - IAI46_03375 0.71 +0.9
732,366 - IAI46_03375 0.79 +0.5
732,405 + IAI46_03375 0.81 -0.6
732,406 - IAI46_03375 0.81 +0.3
732,424 + IAI46_03375 0.82 -0.1
732,425 - IAI46_03375 0.82 +1.0
732,425 - IAI46_03375 0.82 +1.0
732,425 - IAI46_03375 0.82 +0.0
732,434 + IAI46_03375 0.82 +0.4
732,434 + IAI46_03375 0.82 -0.0
732,437 + IAI46_03375 0.83 -0.8
732,438 - IAI46_03375 0.83 -1.5
732,444 + IAI46_03375 0.83 +0.3
732,444 + IAI46_03375 0.83 +1.2
732,445 - IAI46_03375 0.83 -0.4
732,480 + IAI46_03375 0.85 +1.3
732,481 - IAI46_03375 0.85 +0.3
732,481 - IAI46_03375 0.85 +0.6
732,481 - IAI46_03375 0.85 +0.0
732,504 + IAI46_03375 0.87 +0.3
732,504 + IAI46_03375 0.87 +0.2
732,505 - IAI46_03375 0.87 +0.1
732,505 - IAI46_03375 0.87 +0.5
732,505 - IAI46_03375 0.87 -0.3
732,505 - IAI46_03375 0.87 -0.4
732,505 - IAI46_03375 0.87 -0.1
732,507 - IAI46_03375 0.87 +0.7
732,546 + IAI46_03375 0.89 -0.5
732,572 + +1.2
732,631 + +0.0
732,670 - +1.1
732,818 + IAI46_03380 0.16 +0.9
732,818 + IAI46_03380 0.16 +0.8
732,818 + IAI46_03380 0.16 +0.2
732,819 - IAI46_03380 0.17 +0.2
732,859 + IAI46_03380 0.25 -0.1
732,860 - IAI46_03380 0.25 -0.1
732,860 - IAI46_03380 0.25 +0.1
732,931 + IAI46_03380 0.39 +0.4
732,931 + IAI46_03380 0.39 +1.6
732,931 + IAI46_03380 0.39 -0.5
733,094 + IAI46_03380 0.73 +1.5
733,095 - IAI46_03380 0.73 +0.7
733,213 + -0.6
733,245 - +0.4
733,329 + +0.3
733,330 - -0.4
733,333 + +0.9
733,349 + -0.1
733,490 - -0.0
733,499 + +1.0
733,499 + +0.3
733,527 - +0.4
733,541 - -0.7
733,583 + IAI46_03385 0.14 +0.7
733,583 + IAI46_03385 0.14 +0.4
733,584 - IAI46_03385 0.14 +0.7
733,584 - IAI46_03385 0.14 -0.1
733,584 - IAI46_03385 0.14 +0.2
733,670 + IAI46_03385 0.22 +1.0
733,671 - IAI46_03385 0.22 +0.4
733,671 - IAI46_03385 0.22 -0.0
733,688 + IAI46_03385 0.24 -0.8
733,688 + IAI46_03385 0.24 -1.2
733,688 + IAI46_03385 0.24 -1.2
733,689 - IAI46_03385 0.24 +0.4
733,689 - IAI46_03385 0.24 -0.4
733,689 - IAI46_03385 0.24 -1.2

Or see this region's nucleotide sequence