Strain Fitness in Serratia liquefaciens MT49 around IAI46_03165

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03160 and IAI46_03165 are separated by 34 nucleotidesIAI46_03165 and IAI46_03170 are separated by 73 nucleotidesIAI46_03170 and IAI46_03175 overlap by 4 nucleotides IAI46_03160: IAI46_03160 - MFS transporter, at 676,822 to 678,222 _03160 IAI46_03165: IAI46_03165 - sugar porter family MFS transporter, at 678,257 to 679,687 _03165 IAI46_03170: IAI46_03170 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 679,761 to 680,408 _03170 IAI46_03175: IAI46_03175 - 2-dehydro-3-deoxygalactonokinase, at 680,405 to 681,307 _03175 Position (kb) 678 679 680Strain fitness (log2 ratio) -1 0 1 2at 677.297 kb on - strand, within IAI46_03160at 677.297 kb on - strand, within IAI46_03160at 677.301 kb on + strand, within IAI46_03160at 677.301 kb on + strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.321 kb on + strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.327 kb on - strand, within IAI46_03160at 677.408 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.614 kb on + strand, within IAI46_03160at 677.614 kb on + strand, within IAI46_03160at 677.630 kb on - strand, within IAI46_03160at 677.678 kb on - strand, within IAI46_03160at 677.678 kb on - strand, within IAI46_03160at 677.751 kb on + strand, within IAI46_03160at 677.752 kb on - strand, within IAI46_03160at 677.810 kb on - strand, within IAI46_03160at 677.813 kb on + strand, within IAI46_03160at 677.813 kb on + strand, within IAI46_03160at 677.814 kb on - strand, within IAI46_03160at 677.814 kb on - strand, within IAI46_03160at 677.869 kb on + strand, within IAI46_03160at 677.869 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.928 kb on + strand, within IAI46_03160at 678.020 kb on - strand, within IAI46_03160at 678.073 kb on - strand, within IAI46_03160at 678.110 kb on + strandat 678.122 kb on + strandat 678.122 kb on + strandat 678.168 kb on - strandat 678.246 kb on + strandat 678.246 kb on + strandat 678.247 kb on - strandat 678.286 kb on + strandat 678.286 kb on + strandat 678.311 kb on + strandat 678.312 kb on - strandat 678.312 kb on - strandat 678.313 kb on + strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.392 kb on + strandat 678.401 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.411 kb on - strand, within IAI46_03165at 678.490 kb on + strand, within IAI46_03165at 678.490 kb on + strand, within IAI46_03165at 678.576 kb on - strand, within IAI46_03165at 678.611 kb on + strand, within IAI46_03165at 678.611 kb on + strand, within IAI46_03165at 678.611 kb on + strand, within IAI46_03165at 678.612 kb on - strand, within IAI46_03165at 678.612 kb on - strand, within IAI46_03165at 678.616 kb on + strand, within IAI46_03165at 678.646 kb on - strand, within IAI46_03165at 678.646 kb on - strand, within IAI46_03165at 678.646 kb on - strand, within IAI46_03165at 678.675 kb on + strand, within IAI46_03165at 678.675 kb on + strand, within IAI46_03165at 678.675 kb on + strand, within IAI46_03165at 678.676 kb on - strand, within IAI46_03165at 678.682 kb on + strand, within IAI46_03165at 678.682 kb on + strand, within IAI46_03165at 678.683 kb on - strand, within IAI46_03165at 678.683 kb on - strand, within IAI46_03165at 678.684 kb on + strand, within IAI46_03165at 678.684 kb on + strand, within IAI46_03165at 678.685 kb on - strand, within IAI46_03165at 678.685 kb on - strand, within IAI46_03165at 678.685 kb on - strand, within IAI46_03165at 678.743 kb on - strand, within IAI46_03165at 678.775 kb on + strand, within IAI46_03165at 678.806 kb on + strand, within IAI46_03165at 678.874 kb on - strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.877 kb on - strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.934 kb on - strand, within IAI46_03165at 679.049 kb on + strand, within IAI46_03165at 679.127 kb on + strand, within IAI46_03165at 679.128 kb on - strand, within IAI46_03165at 679.128 kb on - strand, within IAI46_03165at 679.136 kb on - strand, within IAI46_03165at 679.140 kb on - strand, within IAI46_03165at 679.140 kb on - strand, within IAI46_03165at 679.241 kb on - strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.305 kb on + strand, within IAI46_03165at 679.306 kb on - strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.328 kb on + strand, within IAI46_03165at 679.468 kb on + strand, within IAI46_03165at 679.469 kb on - strand, within IAI46_03165at 679.469 kb on - strand, within IAI46_03165at 679.549 kb on + strandat 679.681 kb on + strandat 679.728 kb on - strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.758 kb on + strandat 679.759 kb on - strandat 679.759 kb on - strandat 679.762 kb on + strandat 679.812 kb on + strandat 679.812 kb on + strandat 679.813 kb on - strandat 679.813 kb on - strandat 679.813 kb on - strandat 679.840 kb on + strand, within IAI46_03170at 679.840 kb on + strand, within IAI46_03170at 679.841 kb on - strand, within IAI46_03170at 679.883 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.885 kb on + strand, within IAI46_03170at 679.886 kb on - strand, within IAI46_03170at 679.886 kb on - strand, within IAI46_03170at 679.986 kb on - strand, within IAI46_03170at 679.989 kb on - strand, within IAI46_03170at 679.989 kb on - strand, within IAI46_03170at 680.132 kb on + strand, within IAI46_03170at 680.132 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.261 kb on + strand, within IAI46_03170at 680.262 kb on - strand, within IAI46_03170at 680.262 kb on - strand, within IAI46_03170at 680.262 kb on - strand, within IAI46_03170at 680.264 kb on + strand, within IAI46_03170at 680.264 kb on + strand, within IAI46_03170at 680.265 kb on - strand, within IAI46_03170at 680.423 kb on + strandat 680.424 kb on - strandat 680.433 kb on + strandat 680.434 kb on - strandat 680.456 kb on - strandat 680.464 kb on + strandat 680.465 kb on - strandat 680.611 kb on - strand, within IAI46_03175at 680.611 kb on - strand, within IAI46_03175at 680.611 kb on - strand, within IAI46_03175at 680.618 kb on + strand, within IAI46_03175at 680.619 kb on - strand, within IAI46_03175at 680.620 kb on + strand, within IAI46_03175at 680.621 kb on - strand, within IAI46_03175at 680.656 kb on + strand, within IAI46_03175at 680.657 kb on - strand, within IAI46_03175

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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677,297 - IAI46_03160 0.34 -0.1
677,297 - IAI46_03160 0.34 +0.1
677,301 + IAI46_03160 0.34 -0.1
677,301 + IAI46_03160 0.34 -0.6
677,302 - IAI46_03160 0.34 -0.7
677,302 - IAI46_03160 0.34 -0.0
677,302 - IAI46_03160 0.34 -0.4
677,302 - IAI46_03160 0.34 -1.4
677,302 - IAI46_03160 0.34 +0.4
677,321 + IAI46_03160 0.36 +0.4
677,322 - IAI46_03160 0.36 -0.3
677,322 - IAI46_03160 0.36 +0.2
677,322 - IAI46_03160 0.36 +0.5
677,322 - IAI46_03160 0.36 +0.1
677,327 - IAI46_03160 0.36 -0.3
677,408 + IAI46_03160 0.42 +0.1
677,456 + IAI46_03160 0.45 +0.9
677,456 + IAI46_03160 0.45 -0.1
677,456 + IAI46_03160 0.45 +0.3
677,614 + IAI46_03160 0.57 -0.3
677,614 + IAI46_03160 0.57 +0.4
677,630 - IAI46_03160 0.58 +0.3
677,678 - IAI46_03160 0.61 +0.2
677,678 - IAI46_03160 0.61 -0.7
677,751 + IAI46_03160 0.66 +0.6
677,752 - IAI46_03160 0.66 +0.2
677,810 - IAI46_03160 0.71 -0.3
677,813 + IAI46_03160 0.71 +0.7
677,813 + IAI46_03160 0.71 -0.7
677,814 - IAI46_03160 0.71 +0.4
677,814 - IAI46_03160 0.71 -1.7
677,869 + IAI46_03160 0.75 +0.2
677,869 + IAI46_03160 0.75 +0.4
677,873 + IAI46_03160 0.75 -0.2
677,873 + IAI46_03160 0.75 +0.8
677,873 + IAI46_03160 0.75 +0.7
677,873 + IAI46_03160 0.75 -0.0
677,873 + IAI46_03160 0.75 +1.0
677,873 + IAI46_03160 0.75 +1.8
677,873 + IAI46_03160 0.75 +0.2
677,873 + IAI46_03160 0.75 -0.2
677,873 + IAI46_03160 0.75 +0.5
677,874 - IAI46_03160 0.75 -0.4
677,874 - IAI46_03160 0.75 +0.4
677,874 - IAI46_03160 0.75 -0.7
677,874 - IAI46_03160 0.75 +0.1
677,874 - IAI46_03160 0.75 +0.3
677,928 + IAI46_03160 0.79 -0.7
678,020 - IAI46_03160 0.86 -0.1
678,073 - IAI46_03160 0.89 +0.6
678,110 + +0.1
678,122 + +0.2
678,122 + +0.0
678,168 - -1.0
678,246 + -0.1
678,246 + +1.1
678,247 - -0.6
678,286 + +0.7
678,286 + -0.5
678,311 + -0.6
678,312 - -1.5
678,312 - +1.2
678,313 + +0.0
678,314 - +1.5
678,314 - +1.5
678,314 - +0.4
678,392 + +1.2
678,401 + IAI46_03165 0.10 +0.5
678,410 + IAI46_03165 0.11 +0.3
678,410 + IAI46_03165 0.11 +1.0
678,410 + IAI46_03165 0.11 +0.9
678,410 + IAI46_03165 0.11 +0.2
678,411 - IAI46_03165 0.11 +0.1
678,490 + IAI46_03165 0.16 -0.1
678,490 + IAI46_03165 0.16 +0.5
678,576 - IAI46_03165 0.22 +0.3
678,611 + IAI46_03165 0.25 -0.3
678,611 + IAI46_03165 0.25 +0.9
678,611 + IAI46_03165 0.25 -0.6
678,612 - IAI46_03165 0.25 +0.1
678,612 - IAI46_03165 0.25 -0.5
678,616 + IAI46_03165 0.25 +0.3
678,646 - IAI46_03165 0.27 +0.8
678,646 - IAI46_03165 0.27 +0.3
678,646 - IAI46_03165 0.27 +1.1
678,675 + IAI46_03165 0.29 -0.4
678,675 + IAI46_03165 0.29 -0.3
678,675 + IAI46_03165 0.29 -1.1
678,676 - IAI46_03165 0.29 +0.2
678,682 + IAI46_03165 0.30 +0.5
678,682 + IAI46_03165 0.30 -1.2
678,683 - IAI46_03165 0.30 -0.8
678,683 - IAI46_03165 0.30 -0.5
678,684 + IAI46_03165 0.30 -1.0
678,684 + IAI46_03165 0.30 -0.5
678,685 - IAI46_03165 0.30 +0.2
678,685 - IAI46_03165 0.30 -0.2
678,685 - IAI46_03165 0.30 -0.0
678,743 - IAI46_03165 0.34 -1.2
678,775 + IAI46_03165 0.36 -0.9
678,806 + IAI46_03165 0.38 -0.5
678,874 - IAI46_03165 0.43 +0.5
678,876 + IAI46_03165 0.43 +0.2
678,876 + IAI46_03165 0.43 +1.0
678,876 + IAI46_03165 0.43 -0.8
678,877 - IAI46_03165 0.43 -0.1
678,910 + IAI46_03165 0.46 +0.4
678,910 + IAI46_03165 0.46 -0.5
678,910 + IAI46_03165 0.46 +0.4
678,934 - IAI46_03165 0.47 -0.0
679,049 + IAI46_03165 0.55 -0.3
679,127 + IAI46_03165 0.61 +0.3
679,128 - IAI46_03165 0.61 +1.0
679,128 - IAI46_03165 0.61 +0.5
679,136 - IAI46_03165 0.61 -0.4
679,140 - IAI46_03165 0.62 +0.3
679,140 - IAI46_03165 0.62 +0.9
679,241 - IAI46_03165 0.69 +0.2
679,305 + IAI46_03165 0.73 -0.2
679,305 + IAI46_03165 0.73 +0.6
679,305 + IAI46_03165 0.73 +0.2
679,305 + IAI46_03165 0.73 +0.1
679,306 - IAI46_03165 0.73 +0.0
679,328 + IAI46_03165 0.75 +1.1
679,328 + IAI46_03165 0.75 -1.5
679,328 + IAI46_03165 0.75 +1.3
679,328 + IAI46_03165 0.75 -0.0
679,468 + IAI46_03165 0.85 +0.4
679,469 - IAI46_03165 0.85 +0.6
679,469 - IAI46_03165 0.85 +0.7
679,549 + +0.3
679,681 + +2.7
679,728 - -1.1
679,758 + -0.3
679,758 + +0.2
679,758 + +0.1
679,758 + +0.2
679,758 + +0.1
679,759 - +0.4
679,759 - +0.1
679,762 + +0.4
679,812 + -0.1
679,812 + -0.0
679,813 - -0.1
679,813 - -1.4
679,813 - -0.2
679,840 + IAI46_03170 0.12 +0.7
679,840 + IAI46_03170 0.12 -0.3
679,841 - IAI46_03170 0.12 +0.5
679,883 + IAI46_03170 0.19 +0.7
679,885 + IAI46_03170 0.19 +0.6
679,885 + IAI46_03170 0.19 +0.9
679,885 + IAI46_03170 0.19 +0.9
679,885 + IAI46_03170 0.19 -0.9
679,886 - IAI46_03170 0.19 +0.5
679,886 - IAI46_03170 0.19 +0.3
679,986 - IAI46_03170 0.35 -0.4
679,989 - IAI46_03170 0.35 +0.5
679,989 - IAI46_03170 0.35 +0.8
680,132 + IAI46_03170 0.57 +0.5
680,132 + IAI46_03170 0.57 -0.1
680,261 + IAI46_03170 0.77 +0.6
680,261 + IAI46_03170 0.77 +0.5
680,261 + IAI46_03170 0.77 +1.0
680,261 + IAI46_03170 0.77 +0.4
680,262 - IAI46_03170 0.77 +1.5
680,262 - IAI46_03170 0.77 -0.4
680,262 - IAI46_03170 0.77 +0.9
680,264 + IAI46_03170 0.78 +0.6
680,264 + IAI46_03170 0.78 -0.4
680,265 - IAI46_03170 0.78 -0.5
680,423 + +0.0
680,424 - -0.2
680,433 + -0.1
680,434 - -0.5
680,456 - +0.2
680,464 + +0.4
680,465 - +0.7
680,611 - IAI46_03175 0.23 -0.6
680,611 - IAI46_03175 0.23 +0.5
680,611 - IAI46_03175 0.23 -0.1
680,618 + IAI46_03175 0.24 +0.3
680,619 - IAI46_03175 0.24 -0.0
680,620 + IAI46_03175 0.24 -0.1
680,621 - IAI46_03175 0.24 -0.1
680,656 + IAI46_03175 0.28 +0.0
680,657 - IAI46_03175 0.28 +0.6

Or see this region's nucleotide sequence