Strain Fitness in Serratia liquefaciens MT49 around IAI46_03070

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03065 and IAI46_03070 are separated by 51 nucleotidesIAI46_03070 and IAI46_03075 are separated by 324 nucleotides IAI46_03065: IAI46_03065 - MFS transporter, at 654,240 to 655,547 _03065 IAI46_03070: IAI46_03070 - acetate uptake transporter, at 655,599 to 656,198 _03070 IAI46_03075: IAI46_03075 - molecular chaperone DnaK, at 656,523 to 658,436 _03075 Position (kb) 655 656 657Strain fitness (log2 ratio) -2 -1 0 1at 654.680 kb on - strand, within IAI46_03065at 654.738 kb on - strand, within IAI46_03065at 654.776 kb on + strand, within IAI46_03065at 654.776 kb on + strand, within IAI46_03065at 654.776 kb on + strand, within IAI46_03065at 654.776 kb on + strand, within IAI46_03065at 654.777 kb on - strand, within IAI46_03065at 654.858 kb on + strand, within IAI46_03065at 654.858 kb on + strand, within IAI46_03065at 654.859 kb on - strand, within IAI46_03065at 654.859 kb on - strand, within IAI46_03065at 654.953 kb on + strand, within IAI46_03065at 655.041 kb on + strand, within IAI46_03065at 655.210 kb on + strand, within IAI46_03065at 655.210 kb on + strand, within IAI46_03065at 655.211 kb on - strand, within IAI46_03065at 655.258 kb on - strand, within IAI46_03065at 655.258 kb on - strand, within IAI46_03065at 655.297 kb on + strand, within IAI46_03065at 655.297 kb on + strand, within IAI46_03065at 655.302 kb on + strand, within IAI46_03065at 655.302 kb on + strand, within IAI46_03065at 655.302 kb on + strand, within IAI46_03065at 655.303 kb on - strand, within IAI46_03065at 655.303 kb on - strand, within IAI46_03065at 655.303 kb on - strand, within IAI46_03065at 655.359 kb on + strand, within IAI46_03065at 655.359 kb on + strand, within IAI46_03065at 655.360 kb on - strand, within IAI46_03065at 655.360 kb on - strand, within IAI46_03065at 655.360 kb on - strand, within IAI46_03065at 655.360 kb on - strand, within IAI46_03065at 655.360 kb on - strand, within IAI46_03065at 655.360 kb on - strand, within IAI46_03065at 655.361 kb on + strand, within IAI46_03065at 655.361 kb on + strand, within IAI46_03065at 655.361 kb on + strand, within IAI46_03065at 655.362 kb on - strand, within IAI46_03065at 655.362 kb on - strand, within IAI46_03065at 655.362 kb on - strand, within IAI46_03065at 655.371 kb on + strand, within IAI46_03065at 655.443 kb on + strandat 655.443 kb on + strandat 655.444 kb on - strandat 655.444 kb on - strandat 655.450 kb on + strandat 655.451 kb on - strandat 655.451 kb on - strandat 655.451 kb on - strandat 655.468 kb on + strandat 655.489 kb on - strandat 655.539 kb on + strandat 655.539 kb on + strandat 655.540 kb on - strandat 655.545 kb on + strandat 655.601 kb on - strandat 655.601 kb on - strandat 655.617 kb on - strandat 655.623 kb on + strandat 655.623 kb on + strandat 655.623 kb on + strandat 655.623 kb on + strandat 655.624 kb on - strandat 655.624 kb on - strandat 655.624 kb on - strandat 655.624 kb on - strandat 655.694 kb on + strand, within IAI46_03070at 655.695 kb on - strand, within IAI46_03070at 655.702 kb on + strand, within IAI46_03070at 655.703 kb on - strand, within IAI46_03070at 655.736 kb on - strand, within IAI46_03070at 655.894 kb on + strand, within IAI46_03070at 655.895 kb on - strand, within IAI46_03070at 655.992 kb on - strand, within IAI46_03070at 655.992 kb on - strand, within IAI46_03070at 656.012 kb on + strand, within IAI46_03070at 656.026 kb on + strand, within IAI46_03070at 656.045 kb on + strand, within IAI46_03070at 656.045 kb on + strand, within IAI46_03070at 656.045 kb on + strand, within IAI46_03070at 656.046 kb on - strand, within IAI46_03070at 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.198 kb on + strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.199 kb on - strandat 656.241 kb on - strandat 656.249 kb on - strandat 656.275 kb on - strandat 656.303 kb on + strandat 656.303 kb on + strandat 656.303 kb on + strandat 656.303 kb on + strandat 656.303 kb on + strandat 656.303 kb on + strandat 656.304 kb on - strandat 656.304 kb on - strandat 656.304 kb on - strandat 656.304 kb on - strandat 656.387 kb on - strandat 656.387 kb on - strandat 656.387 kb on - strandat 656.475 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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654,680 - IAI46_03065 0.34 +0.1
654,738 - IAI46_03065 0.38 +0.1
654,776 + IAI46_03065 0.41 -0.4
654,776 + IAI46_03065 0.41 -0.6
654,776 + IAI46_03065 0.41 +0.4
654,776 + IAI46_03065 0.41 -0.8
654,777 - IAI46_03065 0.41 -0.2
654,858 + IAI46_03065 0.47 -0.2
654,858 + IAI46_03065 0.47 -0.4
654,859 - IAI46_03065 0.47 -0.8
654,859 - IAI46_03065 0.47 +0.8
654,953 + IAI46_03065 0.55 -0.7
655,041 + IAI46_03065 0.61 -0.6
655,210 + IAI46_03065 0.74 +1.4
655,210 + IAI46_03065 0.74 +0.6
655,211 - IAI46_03065 0.74 -0.5
655,258 - IAI46_03065 0.78 +0.5
655,258 - IAI46_03065 0.78 -0.1
655,297 + IAI46_03065 0.81 +1.4
655,297 + IAI46_03065 0.81 -2.5
655,302 + IAI46_03065 0.81 +0.3
655,302 + IAI46_03065 0.81 +0.1
655,302 + IAI46_03065 0.81 +0.1
655,303 - IAI46_03065 0.81 -0.3
655,303 - IAI46_03065 0.81 -0.5
655,303 - IAI46_03065 0.81 +0.2
655,359 + IAI46_03065 0.86 -0.5
655,359 + IAI46_03065 0.86 +0.6
655,360 - IAI46_03065 0.86 -0.3
655,360 - IAI46_03065 0.86 -0.1
655,360 - IAI46_03065 0.86 -0.5
655,360 - IAI46_03065 0.86 -0.2
655,360 - IAI46_03065 0.86 +0.5
655,360 - IAI46_03065 0.86 +0.6
655,361 + IAI46_03065 0.86 +1.2
655,361 + IAI46_03065 0.86 +0.3
655,361 + IAI46_03065 0.86 +0.1
655,362 - IAI46_03065 0.86 -0.6
655,362 - IAI46_03065 0.86 +0.1
655,362 - IAI46_03065 0.86 -0.2
655,371 + IAI46_03065 0.86 +0.8
655,443 + -0.1
655,443 + +0.5
655,444 - -0.3
655,444 - -0.8
655,450 + +0.5
655,451 - -0.1
655,451 - +0.0
655,451 - +0.2
655,468 + -0.2
655,489 - -0.4
655,539 + +0.6
655,539 + -0.2
655,540 - -0.5
655,545 + -0.1
655,601 - +0.7
655,601 - -0.4
655,617 - +0.3
655,623 + +0.3
655,623 + +0.9
655,623 + -0.4
655,623 + -0.0
655,624 - -0.7
655,624 - +0.5
655,624 - -0.2
655,624 - +0.4
655,694 + IAI46_03070 0.16 -0.2
655,695 - IAI46_03070 0.16 +0.0
655,702 + IAI46_03070 0.17 +1.0
655,703 - IAI46_03070 0.17 +0.6
655,736 - IAI46_03070 0.23 +0.5
655,894 + IAI46_03070 0.49 -0.7
655,895 - IAI46_03070 0.49 +0.5
655,992 - IAI46_03070 0.66 +0.0
655,992 - IAI46_03070 0.66 +0.3
656,012 + IAI46_03070 0.69 -0.5
656,026 + IAI46_03070 0.71 +0.1
656,045 + IAI46_03070 0.74 -0.1
656,045 + IAI46_03070 0.74 -0.2
656,045 + IAI46_03070 0.74 -0.2
656,046 - IAI46_03070 0.74 +0.5
656,198 + +0.3
656,198 + -0.1
656,198 + +0.6
656,198 + +0.5
656,198 + -1.1
656,198 + -0.0
656,198 + -0.5
656,198 + +0.4
656,198 + +0.5
656,198 + +0.4
656,199 - +0.6
656,199 - +1.4
656,199 - -0.3
656,199 - -0.2
656,199 - +0.3
656,199 - +0.1
656,199 - +0.1
656,199 - +0.0
656,199 - +0.7
656,199 - +0.3
656,199 - +0.5
656,199 - +0.9
656,199 - -0.1
656,199 - -0.2
656,199 - +0.2
656,241 - -0.7
656,249 - -0.4
656,275 - +0.1
656,303 + +0.6
656,303 + -0.0
656,303 + +0.4
656,303 + -0.1
656,303 + -0.5
656,303 + -0.3
656,304 - +0.4
656,304 - +0.5
656,304 - +0.3
656,304 - +0.6
656,387 - +1.6
656,387 - +0.3
656,387 - +0.1
656,475 + +0.1

Or see this region's nucleotide sequence