Strain Fitness in Serratia liquefaciens MT49 around IAI46_02335

Experiment: Cobalt chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_02325 and IAI46_02330 are separated by 99 nucleotidesIAI46_02330 and IAI46_02335 are separated by 24 nucleotidesIAI46_02335 and IAI46_02340 are separated by 352 nucleotides IAI46_02325: IAI46_02325 - ribonuclease E inhibitor RraB, at 491,612 to 492,040 _02325 IAI46_02330: IAI46_02330 - tRNA-(ms[2]io[6]A)-hydroxylase, at 492,140 to 492,904 _02330 IAI46_02335: IAI46_02335 - GMC family oxidoreductase N-terminal domain-containing protein, at 492,929 to 494,536 _02335 IAI46_02340: IAI46_02340 - acyltransferase, at 494,889 to 495,878 _02340 Position (kb) 492 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.933 kb on + strand, within IAI46_02325at 491.934 kb on - strand, within IAI46_02325at 491.951 kb on + strand, within IAI46_02325at 491.951 kb on + strand, within IAI46_02325at 491.951 kb on + strand, within IAI46_02325at 492.028 kb on + strandat 492.042 kb on + strandat 492.103 kb on + strandat 492.110 kb on - strandat 492.124 kb on - strandat 492.146 kb on + strandat 492.146 kb on + strandat 492.147 kb on - strandat 492.147 kb on - strandat 492.235 kb on - strand, within IAI46_02330at 492.256 kb on + strand, within IAI46_02330at 492.256 kb on + strand, within IAI46_02330at 492.257 kb on - strand, within IAI46_02330at 492.309 kb on - strand, within IAI46_02330at 492.352 kb on - strand, within IAI46_02330at 492.352 kb on - strand, within IAI46_02330at 492.352 kb on - strand, within IAI46_02330at 492.359 kb on + strand, within IAI46_02330at 492.439 kb on + strand, within IAI46_02330at 492.439 kb on + strand, within IAI46_02330at 492.440 kb on - strand, within IAI46_02330at 492.554 kb on + strand, within IAI46_02330at 492.554 kb on + strand, within IAI46_02330at 492.555 kb on - strand, within IAI46_02330at 492.555 kb on - strand, within IAI46_02330at 492.556 kb on + strand, within IAI46_02330at 492.556 kb on + strand, within IAI46_02330at 492.556 kb on + strand, within IAI46_02330at 492.557 kb on - strand, within IAI46_02330at 492.578 kb on + strand, within IAI46_02330at 492.578 kb on + strand, within IAI46_02330at 492.634 kb on + strand, within IAI46_02330at 492.634 kb on + strand, within IAI46_02330at 492.634 kb on + strand, within IAI46_02330at 492.635 kb on - strand, within IAI46_02330at 492.635 kb on - strand, within IAI46_02330at 492.653 kb on + strand, within IAI46_02330at 492.653 kb on + strand, within IAI46_02330at 492.654 kb on - strand, within IAI46_02330at 492.654 kb on - strand, within IAI46_02330at 492.654 kb on - strand, within IAI46_02330at 492.714 kb on + strand, within IAI46_02330at 492.714 kb on + strand, within IAI46_02330at 492.725 kb on + strand, within IAI46_02330at 492.726 kb on - strand, within IAI46_02330at 492.758 kb on + strand, within IAI46_02330at 492.759 kb on - strand, within IAI46_02330at 492.767 kb on + strand, within IAI46_02330at 492.767 kb on + strand, within IAI46_02330at 492.768 kb on - strand, within IAI46_02330at 492.789 kb on + strand, within IAI46_02330at 492.976 kb on + strandat 492.976 kb on + strandat 492.976 kb on + strandat 492.976 kb on + strandat 492.977 kb on - strandat 492.977 kb on - strandat 492.995 kb on - strandat 493.118 kb on + strand, within IAI46_02335at 493.128 kb on + strand, within IAI46_02335at 493.129 kb on - strand, within IAI46_02335at 493.129 kb on - strand, within IAI46_02335at 493.305 kb on + strand, within IAI46_02335at 493.383 kb on + strand, within IAI46_02335at 493.526 kb on + strand, within IAI46_02335at 493.527 kb on - strand, within IAI46_02335at 493.581 kb on - strand, within IAI46_02335at 493.608 kb on + strand, within IAI46_02335at 493.608 kb on + strand, within IAI46_02335at 493.609 kb on - strand, within IAI46_02335at 493.648 kb on + strand, within IAI46_02335at 493.649 kb on - strand, within IAI46_02335at 493.649 kb on - strand, within IAI46_02335at 493.649 kb on - strand, within IAI46_02335at 493.836 kb on + strand, within IAI46_02335at 493.836 kb on + strand, within IAI46_02335at 493.837 kb on - strand, within IAI46_02335at 493.837 kb on - strand, within IAI46_02335at 493.837 kb on - strand, within IAI46_02335at 493.837 kb on - strand, within IAI46_02335at 493.983 kb on + strand, within IAI46_02335at 493.983 kb on + strand, within IAI46_02335at 493.983 kb on + strand, within IAI46_02335at 493.984 kb on - strand, within IAI46_02335at 493.984 kb on - strand, within IAI46_02335at 494.169 kb on + strand, within IAI46_02335at 494.170 kb on - strand, within IAI46_02335at 494.229 kb on + strand, within IAI46_02335at 494.229 kb on + strand, within IAI46_02335at 494.251 kb on + strand, within IAI46_02335at 494.251 kb on + strand, within IAI46_02335at 494.251 kb on + strand, within IAI46_02335at 494.252 kb on - strand, within IAI46_02335at 494.252 kb on - strand, within IAI46_02335at 494.253 kb on + strand, within IAI46_02335at 494.253 kb on + strand, within IAI46_02335at 494.253 kb on + strand, within IAI46_02335at 494.253 kb on + strand, within IAI46_02335at 494.253 kb on + strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.254 kb on - strand, within IAI46_02335at 494.405 kb on + strandat 494.405 kb on + strandat 494.406 kb on - strandat 494.411 kb on - strandat 494.514 kb on + strandat 494.515 kb on - strandat 494.598 kb on - strandat 494.793 kb on + strandat 494.798 kb on - strandat 494.846 kb on + strandat 494.846 kb on + strandat 494.847 kb on - strandat 494.847 kb on - strandat 494.873 kb on + strandat 494.874 kb on - strandat 494.938 kb on + strandat 494.938 kb on + strandat 494.938 kb on + strandat 494.938 kb on + strandat 494.982 kb on - strandat 495.000 kb on + strand, within IAI46_02340at 495.000 kb on + strand, within IAI46_02340at 495.006 kb on - strand, within IAI46_02340at 495.033 kb on + strand, within IAI46_02340at 495.123 kb on + strand, within IAI46_02340at 495.124 kb on - strand, within IAI46_02340at 495.125 kb on + strand, within IAI46_02340at 495.126 kb on - strand, within IAI46_02340at 495.126 kb on - strand, within IAI46_02340at 495.149 kb on - strand, within IAI46_02340at 495.150 kb on + strand, within IAI46_02340at 495.152 kb on + strand, within IAI46_02340at 495.153 kb on - strand, within IAI46_02340at 495.153 kb on - strand, within IAI46_02340at 495.153 kb on - strand, within IAI46_02340at 495.166 kb on + strand, within IAI46_02340at 495.166 kb on + strand, within IAI46_02340at 495.167 kb on - strand, within IAI46_02340at 495.167 kb on - strand, within IAI46_02340at 495.172 kb on + strand, within IAI46_02340at 495.172 kb on + strand, within IAI46_02340at 495.172 kb on + strand, within IAI46_02340at 495.172 kb on + strand, within IAI46_02340at 495.172 kb on + strand, within IAI46_02340at 495.176 kb on + strand, within IAI46_02340at 495.177 kb on - strand, within IAI46_02340at 495.177 kb on - strand, within IAI46_02340at 495.219 kb on + strand, within IAI46_02340at 495.219 kb on + strand, within IAI46_02340at 495.219 kb on + strand, within IAI46_02340at 495.220 kb on - strand, within IAI46_02340at 495.220 kb on - strand, within IAI46_02340at 495.220 kb on - strand, within IAI46_02340at 495.220 kb on - strand, within IAI46_02340at 495.220 kb on - strand, within IAI46_02340at 495.264 kb on - strand, within IAI46_02340at 495.264 kb on - strand, within IAI46_02340at 495.273 kb on + strand, within IAI46_02340at 495.273 kb on + strand, within IAI46_02340at 495.273 kb on + strand, within IAI46_02340at 495.273 kb on + strand, within IAI46_02340at 495.273 kb on + strand, within IAI46_02340at 495.273 kb on + strand, within IAI46_02340at 495.274 kb on - strand, within IAI46_02340at 495.275 kb on + strand, within IAI46_02340at 495.276 kb on - strand, within IAI46_02340at 495.303 kb on + strand, within IAI46_02340at 495.304 kb on - strand, within IAI46_02340at 495.304 kb on - strand, within IAI46_02340at 495.304 kb on - strand, within IAI46_02340at 495.312 kb on + strand, within IAI46_02340at 495.312 kb on + strand, within IAI46_02340at 495.312 kb on + strand, within IAI46_02340at 495.313 kb on - strand, within IAI46_02340at 495.313 kb on - strand, within IAI46_02340at 495.347 kb on + strand, within IAI46_02340at 495.347 kb on + strand, within IAI46_02340at 495.359 kb on - strand, within IAI46_02340at 495.400 kb on + strand, within IAI46_02340at 495.400 kb on + strand, within IAI46_02340at 495.406 kb on - strand, within IAI46_02340at 495.439 kb on - strand, within IAI46_02340at 495.530 kb on + strand, within IAI46_02340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
remove
491,933 + IAI46_02325 0.75 +0.2
491,934 - IAI46_02325 0.75 +0.6
491,951 + IAI46_02325 0.79 -0.2
491,951 + IAI46_02325 0.79 +0.0
491,951 + IAI46_02325 0.79 -0.4
492,028 + +0.1
492,042 + -1.3
492,103 + -0.4
492,110 - -1.2
492,124 - +0.5
492,146 + +0.1
492,146 + -0.5
492,147 - -0.4
492,147 - +0.5
492,235 - IAI46_02330 0.12 +0.2
492,256 + IAI46_02330 0.15 -1.0
492,256 + IAI46_02330 0.15 +1.4
492,257 - IAI46_02330 0.15 -0.0
492,309 - IAI46_02330 0.22 -0.8
492,352 - IAI46_02330 0.28 +0.3
492,352 - IAI46_02330 0.28 +0.2
492,352 - IAI46_02330 0.28 -0.8
492,359 + IAI46_02330 0.29 -0.8
492,439 + IAI46_02330 0.39 +0.1
492,439 + IAI46_02330 0.39 +0.2
492,440 - IAI46_02330 0.39 +0.5
492,554 + IAI46_02330 0.54 +0.0
492,554 + IAI46_02330 0.54 +1.2
492,555 - IAI46_02330 0.54 +0.6
492,555 - IAI46_02330 0.54 +0.7
492,556 + IAI46_02330 0.54 -0.1
492,556 + IAI46_02330 0.54 +0.3
492,556 + IAI46_02330 0.54 +0.4
492,557 - IAI46_02330 0.55 -0.3
492,578 + IAI46_02330 0.57 -0.3
492,578 + IAI46_02330 0.57 +1.4
492,634 + IAI46_02330 0.65 -1.1
492,634 + IAI46_02330 0.65 +0.0
492,634 + IAI46_02330 0.65 -0.3
492,635 - IAI46_02330 0.65 +1.0
492,635 - IAI46_02330 0.65 -0.3
492,653 + IAI46_02330 0.67 +0.5
492,653 + IAI46_02330 0.67 +0.6
492,654 - IAI46_02330 0.67 +0.2
492,654 - IAI46_02330 0.67 +0.4
492,654 - IAI46_02330 0.67 +1.6
492,714 + IAI46_02330 0.75 +0.4
492,714 + IAI46_02330 0.75 +0.5
492,725 + IAI46_02330 0.76 -0.5
492,726 - IAI46_02330 0.77 +0.8
492,758 + IAI46_02330 0.81 -0.3
492,759 - IAI46_02330 0.81 -0.5
492,767 + IAI46_02330 0.82 +0.5
492,767 + IAI46_02330 0.82 -0.5
492,768 - IAI46_02330 0.82 -0.2
492,789 + IAI46_02330 0.85 -0.1
492,976 + -0.9
492,976 + -0.5
492,976 + +0.1
492,976 + -0.6
492,977 - +0.1
492,977 - -1.1
492,995 - -0.1
493,118 + IAI46_02335 0.12 -0.0
493,128 + IAI46_02335 0.12 -0.4
493,129 - IAI46_02335 0.12 -0.1
493,129 - IAI46_02335 0.12 +0.5
493,305 + IAI46_02335 0.23 -1.2
493,383 + IAI46_02335 0.28 +0.5
493,526 + IAI46_02335 0.37 +1.3
493,527 - IAI46_02335 0.37 +0.0
493,581 - IAI46_02335 0.41 +0.7
493,608 + IAI46_02335 0.42 -0.5
493,608 + IAI46_02335 0.42 -0.1
493,609 - IAI46_02335 0.42 -0.3
493,648 + IAI46_02335 0.45 +0.4
493,649 - IAI46_02335 0.45 +1.1
493,649 - IAI46_02335 0.45 -0.4
493,649 - IAI46_02335 0.45 +0.1
493,836 + IAI46_02335 0.56 +1.9
493,836 + IAI46_02335 0.56 +0.6
493,837 - IAI46_02335 0.56 -0.5
493,837 - IAI46_02335 0.56 +0.2
493,837 - IAI46_02335 0.56 -0.1
493,837 - IAI46_02335 0.56 -0.6
493,983 + IAI46_02335 0.66 -0.1
493,983 + IAI46_02335 0.66 -0.3
493,983 + IAI46_02335 0.66 +0.7
493,984 - IAI46_02335 0.66 -0.3
493,984 - IAI46_02335 0.66 -0.4
494,169 + IAI46_02335 0.77 -1.1
494,170 - IAI46_02335 0.77 -0.5
494,229 + IAI46_02335 0.81 -0.1
494,229 + IAI46_02335 0.81 -0.3
494,251 + IAI46_02335 0.82 +0.1
494,251 + IAI46_02335 0.82 -0.2
494,251 + IAI46_02335 0.82 +0.3
494,252 - IAI46_02335 0.82 -0.2
494,252 - IAI46_02335 0.82 +0.8
494,253 + IAI46_02335 0.82 +0.3
494,253 + IAI46_02335 0.82 -0.6
494,253 + IAI46_02335 0.82 -1.1
494,253 + IAI46_02335 0.82 +0.7
494,253 + IAI46_02335 0.82 +0.2
494,254 - IAI46_02335 0.82 +0.1
494,254 - IAI46_02335 0.82 +0.0
494,254 - IAI46_02335 0.82 -0.6
494,254 - IAI46_02335 0.82 -0.2
494,254 - IAI46_02335 0.82 -0.3
494,254 - IAI46_02335 0.82 -0.5
494,254 - IAI46_02335 0.82 +0.3
494,254 - IAI46_02335 0.82 -0.7
494,405 + +0.2
494,405 + +0.2
494,406 - -1.4
494,411 - +0.1
494,514 + +0.4
494,515 - +1.8
494,598 - +0.5
494,793 + -0.3
494,798 - +1.0
494,846 + +0.0
494,846 + -0.7
494,847 - -0.0
494,847 - -0.9
494,873 + -0.9
494,874 - -0.3
494,938 + +0.1
494,938 + +0.2
494,938 + +0.4
494,938 + -1.0
494,982 - -0.6
495,000 + IAI46_02340 0.11 -0.7
495,000 + IAI46_02340 0.11 -0.6
495,006 - IAI46_02340 0.12 +0.0
495,033 + IAI46_02340 0.15 +0.2
495,123 + IAI46_02340 0.24 +1.2
495,124 - IAI46_02340 0.24 +0.4
495,125 + IAI46_02340 0.24 -0.6
495,126 - IAI46_02340 0.24 -0.0
495,126 - IAI46_02340 0.24 -1.1
495,149 - IAI46_02340 0.26 -0.0
495,150 + IAI46_02340 0.26 -2.9
495,152 + IAI46_02340 0.27 -0.9
495,153 - IAI46_02340 0.27 +0.4
495,153 - IAI46_02340 0.27 +0.1
495,153 - IAI46_02340 0.27 +0.8
495,166 + IAI46_02340 0.28 +0.0
495,166 + IAI46_02340 0.28 -0.1
495,167 - IAI46_02340 0.28 -0.1
495,167 - IAI46_02340 0.28 -0.3
495,172 + IAI46_02340 0.29 +0.6
495,172 + IAI46_02340 0.29 -0.1
495,172 + IAI46_02340 0.29 -0.5
495,172 + IAI46_02340 0.29 +1.0
495,172 + IAI46_02340 0.29 -0.6
495,176 + IAI46_02340 0.29 +0.2
495,177 - IAI46_02340 0.29 +0.2
495,177 - IAI46_02340 0.29 -0.5
495,219 + IAI46_02340 0.33 +1.0
495,219 + IAI46_02340 0.33 -0.3
495,219 + IAI46_02340 0.33 +0.5
495,220 - IAI46_02340 0.33 -0.5
495,220 - IAI46_02340 0.33 -0.4
495,220 - IAI46_02340 0.33 +0.0
495,220 - IAI46_02340 0.33 +0.8
495,220 - IAI46_02340 0.33 -0.6
495,264 - IAI46_02340 0.38 -0.3
495,264 - IAI46_02340 0.38 +0.6
495,273 + IAI46_02340 0.39 -0.1
495,273 + IAI46_02340 0.39 -0.0
495,273 + IAI46_02340 0.39 -0.1
495,273 + IAI46_02340 0.39 +1.5
495,273 + IAI46_02340 0.39 +0.5
495,273 + IAI46_02340 0.39 +0.6
495,274 - IAI46_02340 0.39 -0.1
495,275 + IAI46_02340 0.39 -0.3
495,276 - IAI46_02340 0.39 +0.2
495,303 + IAI46_02340 0.42 -0.3
495,304 - IAI46_02340 0.42 +0.0
495,304 - IAI46_02340 0.42 +0.6
495,304 - IAI46_02340 0.42 -1.3
495,312 + IAI46_02340 0.43 -1.0
495,312 + IAI46_02340 0.43 -0.4
495,312 + IAI46_02340 0.43 -0.7
495,313 - IAI46_02340 0.43 +0.3
495,313 - IAI46_02340 0.43 +0.3
495,347 + IAI46_02340 0.46 +0.4
495,347 + IAI46_02340 0.46 +1.2
495,359 - IAI46_02340 0.47 +0.1
495,400 + IAI46_02340 0.52 +0.1
495,400 + IAI46_02340 0.52 -0.2
495,406 - IAI46_02340 0.52 -0.9
495,439 - IAI46_02340 0.56 +0.1
495,530 + IAI46_02340 0.65 +1.1

Or see this region's nucleotide sequence