Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_02120 and IAI46_02125 are separated by 8 nucleotides IAI46_02125 and IAI46_02130 overlap by 4 nucleotides IAI46_02130 and IAI46_02135 are separated by 173 nucleotides IAI46_02135 and IAI46_02140 are separated by 283 nucleotides
IAI46_02120: IAI46_02120 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 450,029 to 450,316
_02120
IAI46_02125: IAI46_02125 - type II toxin-antitoxin system RelE/ParE family toxin, at 450,325 to 450,609
_02125
IAI46_02130: IAI46_02130 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 450,606 to 451,070
_02130
IAI46_02135: IAI46_02135 - anaerobic ribonucleoside-triphosphate reductase, at 451,244 to 453,382
_02135
IAI46_02140: IAI46_02140 - LysR family transcriptional regulator, at 453,666 to 454,574
_02140
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 450.281 kb on - strand, within IAI46_02120 at 450.325 kb on - strand at 450.393 kb on + strand, within IAI46_02125 at 450.433 kb on - strand, within IAI46_02125 at 450.496 kb on - strand, within IAI46_02125 at 450.525 kb on - strand, within IAI46_02125 at 450.531 kb on - strand, within IAI46_02125 at 450.556 kb on - strand, within IAI46_02125 at 450.599 kb on + strand at 450.599 kb on + strand at 450.599 kb on + strand at 450.599 kb on + strand at 450.599 kb on + strand at 450.600 kb on - strand at 450.600 kb on - strand at 450.607 kb on + strand at 450.608 kb on - strand at 450.617 kb on + strand at 450.617 kb on + strand at 450.617 kb on + strand at 450.618 kb on - strand at 450.618 kb on - strand at 450.618 kb on - strand at 450.667 kb on - strand, within IAI46_02130 at 450.667 kb on - strand, within IAI46_02130 at 450.714 kb on + strand, within IAI46_02130 at 450.714 kb on + strand, within IAI46_02130 at 450.770 kb on + strand, within IAI46_02130 at 450.771 kb on - strand, within IAI46_02130 at 450.771 kb on - strand, within IAI46_02130 at 450.771 kb on - strand, within IAI46_02130 at 450.971 kb on - strand, within IAI46_02130 at 451.051 kb on + strand at 451.051 kb on + strand at 451.052 kb on - strand at 451.054 kb on + strand at 451.055 kb on - strand at 451.091 kb on + strand at 451.138 kb on + strand at 451.138 kb on + strand at 451.139 kb on - strand at 451.139 kb on - strand at 451.147 kb on + strand at 451.147 kb on + strand at 451.148 kb on - strand at 451.178 kb on + strand at 451.215 kb on + strand at 451.215 kb on + strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.216 kb on - strand at 451.449 kb on + strand at 451.498 kb on - strand, within IAI46_02135 at 451.503 kb on + strand, within IAI46_02135 at 451.503 kb on + strand, within IAI46_02135 at 451.504 kb on - strand, within IAI46_02135 at 451.640 kb on + strand, within IAI46_02135 at 451.640 kb on + strand, within IAI46_02135 at 451.665 kb on + strand, within IAI46_02135 at 451.665 kb on + strand, within IAI46_02135 at 451.666 kb on - strand, within IAI46_02135 at 451.666 kb on - strand, within IAI46_02135 at 451.668 kb on + strand, within IAI46_02135 at 451.668 kb on + strand, within IAI46_02135 at 451.669 kb on - strand, within IAI46_02135 at 451.669 kb on - strand, within IAI46_02135 at 451.669 kb on - strand, within IAI46_02135 at 451.669 kb on - strand, within IAI46_02135 at 451.758 kb on + strand, within IAI46_02135 at 451.758 kb on + strand, within IAI46_02135 at 451.861 kb on - strand, within IAI46_02135 at 451.861 kb on - strand, within IAI46_02135 at 451.862 kb on + strand, within IAI46_02135 at 451.862 kb on + strand, within IAI46_02135 at 451.862 kb on + strand, within IAI46_02135 at 451.863 kb on - strand, within IAI46_02135 at 451.914 kb on + strand, within IAI46_02135 at 451.915 kb on - strand, within IAI46_02135 at 452.002 kb on + strand, within IAI46_02135 at 452.004 kb on + strand, within IAI46_02135 at 452.004 kb on + strand, within IAI46_02135 at 452.004 kb on + strand, within IAI46_02135 at 452.005 kb on - strand, within IAI46_02135 at 452.032 kb on + strand, within IAI46_02135 at 452.141 kb on - strand, within IAI46_02135 at 452.171 kb on - strand, within IAI46_02135 at 452.189 kb on + strand, within IAI46_02135 at 452.189 kb on + strand, within IAI46_02135 at 452.190 kb on - strand, within IAI46_02135 at 452.190 kb on - strand, within IAI46_02135 at 452.211 kb on + strand, within IAI46_02135 at 452.212 kb on - strand, within IAI46_02135 at 452.212 kb on - strand, within IAI46_02135 at 452.280 kb on + strand, within IAI46_02135 at 452.281 kb on - strand, within IAI46_02135 at 452.298 kb on + strand, within IAI46_02135 at 452.299 kb on - strand, within IAI46_02135 at 452.299 kb on - strand, within IAI46_02135 at 452.299 kb on - strand, within IAI46_02135 at 452.299 kb on - strand, within IAI46_02135 at 452.299 kb on - strand, within IAI46_02135 at 452.299 kb on - strand, within IAI46_02135 at 452.343 kb on + strand, within IAI46_02135 at 452.344 kb on - strand, within IAI46_02135 at 452.344 kb on - strand, within IAI46_02135 at 452.447 kb on - strand, within IAI46_02135 at 452.456 kb on - strand, within IAI46_02135 at 452.456 kb on - strand, within IAI46_02135 at 452.456 kb on - strand, within IAI46_02135 at 452.581 kb on - strand, within IAI46_02135 at 452.611 kb on - strand, within IAI46_02135 at 452.725 kb on - strand, within IAI46_02135 at 452.728 kb on + strand, within IAI46_02135 at 452.728 kb on + strand, within IAI46_02135 at 452.886 kb on + strand, within IAI46_02135 at 452.886 kb on + strand, within IAI46_02135 at 452.964 kb on + strand, within IAI46_02135 at 453.026 kb on - strand, within IAI46_02135 at 453.026 kb on - strand, within IAI46_02135 at 453.051 kb on - strand, within IAI46_02135 at 453.132 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.139 kb on + strand, within IAI46_02135 at 453.140 kb on - strand, within IAI46_02135 at 453.140 kb on - strand, within IAI46_02135 at 453.141 kb on + strand, within IAI46_02135 at 453.141 kb on + strand, within IAI46_02135 at 453.142 kb on - strand, within IAI46_02135 at 453.142 kb on - strand, within IAI46_02135 at 453.233 kb on + strand at 453.233 kb on + strand at 453.233 kb on + strand at 453.234 kb on - strand at 453.234 kb on - strand at 453.248 kb on + strand at 453.344 kb on + strand at 453.344 kb on + strand at 453.365 kb on - strand at 453.372 kb on - strand at 453.389 kb on - strand at 453.538 kb on + strand at 453.538 kb on + strand at 453.539 kb on - strand at 453.539 kb on - strand at 453.541 kb on + strand at 453.541 kb on + strand at 453.541 kb on + strand at 453.543 kb on + strand at 453.543 kb on + strand at 453.544 kb on - strand at 453.545 kb on + strand at 453.565 kb on - strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.572 kb on + strand at 453.573 kb on - strand at 453.573 kb on - strand at 453.573 kb on - strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.574 kb on + strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.575 kb on - strand at 453.576 kb on + strand at 453.576 kb on + strand at 453.576 kb on + strand at 453.577 kb on - strand at 453.577 kb on - strand at 453.578 kb on + strand at 453.578 kb on + strand at 453.578 kb on + strand at 453.578 kb on + strand at 453.579 kb on - strand at 453.632 kb on + strand at 453.639 kb on + strand at 453.639 kb on + strand at 453.639 kb on + strand at 453.639 kb on + strand at 453.745 kb on + strand at 453.745 kb on + strand at 453.746 kb on - strand at 453.746 kb on - strand at 453.748 kb on + strand at 453.748 kb on + strand at 453.748 kb on + strand at 453.749 kb on - strand at 453.829 kb on + strand, within IAI46_02140 at 453.961 kb on - strand, within IAI46_02140 at 453.961 kb on - strand, within IAI46_02140 at 453.983 kb on + strand, within IAI46_02140 at 454.001 kb on + strand, within IAI46_02140 at 454.001 kb on + strand, within IAI46_02140 at 454.002 kb on - strand, within IAI46_02140 at 454.002 kb on - strand, within IAI46_02140 at 454.051 kb on + strand, within IAI46_02140 at 454.376 kb on + strand, within IAI46_02140 at 454.377 kb on - strand, within IAI46_02140
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 450,281 - IAI46_02120 0.88 +0.5 450,325 - +0.3 450,393 + IAI46_02125 0.24 -1.1 450,433 - IAI46_02125 0.38 +0.0 450,496 - IAI46_02125 0.60 -0.1 450,525 - IAI46_02125 0.70 +0.3 450,531 - IAI46_02125 0.72 +0.2 450,556 - IAI46_02125 0.81 +0.6 450,599 + +0.2 450,599 + +0.3 450,599 + -1.9 450,599 + +0.7 450,599 + +0.2 450,600 - +0.8 450,600 - +0.5 450,607 + +0.3 450,608 - -0.3 450,617 + -0.1 450,617 + +0.0 450,617 + +0.8 450,618 - -0.7 450,618 - +1.6 450,618 - +0.5 450,667 - IAI46_02130 0.13 -0.5 450,667 - IAI46_02130 0.13 -0.2 450,714 + IAI46_02130 0.23 +0.0 450,714 + IAI46_02130 0.23 +0.0 450,770 + IAI46_02130 0.35 -0.1 450,771 - IAI46_02130 0.35 -0.1 450,771 - IAI46_02130 0.35 -0.2 450,771 - IAI46_02130 0.35 -0.2 450,971 - IAI46_02130 0.78 +0.1 451,051 + +1.2 451,051 + -0.2 451,052 - +0.6 451,054 + +0.5 451,055 - +0.3 451,091 + +0.2 451,138 + -0.7 451,138 + -0.5 451,139 - -0.5 451,139 - +0.9 451,147 + +0.0 451,147 + +1.2 451,148 - -0.3 451,178 + -0.3 451,215 + +0.2 451,215 + +0.5 451,216 - +0.6 451,216 - +0.9 451,216 - +0.5 451,216 - +0.9 451,216 - -0.2 451,216 - +0.3 451,216 - -0.8 451,216 - -0.1 451,216 - -0.3 451,216 - +0.4 451,449 + -0.2 451,498 - IAI46_02135 0.12 +0.4 451,503 + IAI46_02135 0.12 +0.1 451,503 + IAI46_02135 0.12 -1.3 451,504 - IAI46_02135 0.12 +0.2 451,640 + IAI46_02135 0.19 -0.9 451,640 + IAI46_02135 0.19 +0.2 451,665 + IAI46_02135 0.20 +0.3 451,665 + IAI46_02135 0.20 -0.6 451,666 - IAI46_02135 0.20 +0.4 451,666 - IAI46_02135 0.20 -0.0 451,668 + IAI46_02135 0.20 -0.1 451,668 + IAI46_02135 0.20 +0.6 451,669 - IAI46_02135 0.20 -3.0 451,669 - IAI46_02135 0.20 +1.3 451,669 - IAI46_02135 0.20 -0.1 451,669 - IAI46_02135 0.20 +0.5 451,758 + IAI46_02135 0.24 -0.8 451,758 + IAI46_02135 0.24 +0.2 451,861 - IAI46_02135 0.29 +0.1 451,861 - IAI46_02135 0.29 +0.4 451,862 + IAI46_02135 0.29 +0.4 451,862 + IAI46_02135 0.29 +0.1 451,862 + IAI46_02135 0.29 +1.4 451,863 - IAI46_02135 0.29 +0.6 451,914 + IAI46_02135 0.31 +0.1 451,915 - IAI46_02135 0.31 +0.0 452,002 + IAI46_02135 0.35 -0.3 452,004 + IAI46_02135 0.36 -0.7 452,004 + IAI46_02135 0.36 -0.0 452,004 + IAI46_02135 0.36 -0.1 452,005 - IAI46_02135 0.36 +0.6 452,032 + IAI46_02135 0.37 +0.3 452,141 - IAI46_02135 0.42 +0.7 452,171 - IAI46_02135 0.43 +0.6 452,189 + IAI46_02135 0.44 +0.5 452,189 + IAI46_02135 0.44 +0.5 452,190 - IAI46_02135 0.44 -0.5 452,190 - IAI46_02135 0.44 +0.1 452,211 + IAI46_02135 0.45 +0.2 452,212 - IAI46_02135 0.45 +0.6 452,212 - IAI46_02135 0.45 +0.2 452,280 + IAI46_02135 0.48 +0.2 452,281 - IAI46_02135 0.48 +0.9 452,298 + IAI46_02135 0.49 -0.2 452,299 - IAI46_02135 0.49 -0.3 452,299 - IAI46_02135 0.49 -0.1 452,299 - IAI46_02135 0.49 +0.4 452,299 - IAI46_02135 0.49 -0.1 452,299 - IAI46_02135 0.49 +0.3 452,299 - IAI46_02135 0.49 +0.8 452,343 + IAI46_02135 0.51 -0.2 452,344 - IAI46_02135 0.51 +0.1 452,344 - IAI46_02135 0.51 -0.2 452,447 - IAI46_02135 0.56 +0.9 452,456 - IAI46_02135 0.57 +1.1 452,456 - IAI46_02135 0.57 +0.4 452,456 - IAI46_02135 0.57 +0.0 452,581 - IAI46_02135 0.63 +0.4 452,611 - IAI46_02135 0.64 +0.5 452,725 - IAI46_02135 0.69 +0.2 452,728 + IAI46_02135 0.69 +0.5 452,728 + IAI46_02135 0.69 +0.7 452,886 + IAI46_02135 0.77 +0.0 452,886 + IAI46_02135 0.77 -1.0 452,964 + IAI46_02135 0.80 +0.1 453,026 - IAI46_02135 0.83 +0.2 453,026 - IAI46_02135 0.83 +0.5 453,051 - IAI46_02135 0.84 -0.3 453,132 + IAI46_02135 0.88 +0.9 453,139 + IAI46_02135 0.89 -0.5 453,139 + IAI46_02135 0.89 -0.6 453,139 + IAI46_02135 0.89 +0.3 453,139 + IAI46_02135 0.89 -0.2 453,140 - IAI46_02135 0.89 -0.2 453,140 - IAI46_02135 0.89 -0.0 453,141 + IAI46_02135 0.89 -0.1 453,141 + IAI46_02135 0.89 +0.5 453,142 - IAI46_02135 0.89 +0.1 453,142 - IAI46_02135 0.89 +0.3 453,233 + +0.6 453,233 + +0.5 453,233 + -0.3 453,234 - +0.3 453,234 - -0.0 453,248 + +0.1 453,344 + +0.0 453,344 + -0.0 453,365 - +0.3 453,372 - -0.4 453,389 - +0.4 453,538 + +0.3 453,538 + +0.9 453,539 - +0.0 453,539 - +0.2 453,541 + -0.2 453,541 + -0.1 453,541 + +0.1 453,543 + +0.0 453,543 + +1.1 453,544 - +0.6 453,545 + -0.1 453,565 - -0.2 453,572 + +0.0 453,572 + +0.2 453,572 + -0.1 453,572 + +0.2 453,572 + -0.2 453,573 - -0.3 453,573 - -2.0 453,573 - -0.6 453,574 + +0.1 453,574 + -0.1 453,574 + -0.5 453,574 + -0.1 453,574 + +0.2 453,574 + -0.8 453,575 - +0.6 453,575 - +0.1 453,575 - -0.1 453,575 - -1.1 453,575 - -0.2 453,576 + -0.8 453,576 + +0.1 453,576 + -1.7 453,577 - +0.3 453,577 - +1.1 453,578 + +0.8 453,578 + -0.2 453,578 + -0.5 453,578 + +0.3 453,579 - +0.4 453,632 + -0.2 453,639 + -0.2 453,639 + -0.3 453,639 + +0.3 453,639 + +0.2 453,745 + -0.8 453,745 + -0.2 453,746 - -0.2 453,746 - +0.9 453,748 + +1.1 453,748 + -0.2 453,748 + -0.1 453,749 - -0.2 453,829 + IAI46_02140 0.18 -0.1 453,961 - IAI46_02140 0.32 -1.1 453,961 - IAI46_02140 0.32 -0.2 453,983 + IAI46_02140 0.35 +0.7 454,001 + IAI46_02140 0.37 -0.3 454,001 + IAI46_02140 0.37 -1.1 454,002 - IAI46_02140 0.37 +0.1 454,002 - IAI46_02140 0.37 -0.4 454,051 + IAI46_02140 0.42 -0.8 454,376 + IAI46_02140 0.78 -0.9 454,377 - IAI46_02140 0.78 -0.1
Or see this region's nucleotide sequence