Strain Fitness in Serratia liquefaciens MT49 around IAI46_02000

Experiment: Cobalt chloride 80 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_01995 and IAI46_02000 overlap by 4 nucleotidesIAI46_02000 and IAI46_02005 are separated by 104 nucleotides IAI46_01995: IAI46_01995 - ABC transporter permease, at 427,752 to 428,906 _01995 IAI46_02000: IAI46_02000 - ABC transporter permease, at 428,903 to 430,045 _02000 IAI46_02005: IAI46_02005 - cupin domain-containing protein, at 430,150 to 431,271 _02005 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -1 0 1 2at 428.064 kb on + strand, within IAI46_01995at 428.065 kb on - strand, within IAI46_01995at 428.076 kb on + strand, within IAI46_01995at 428.076 kb on + strand, within IAI46_01995at 428.076 kb on + strand, within IAI46_01995at 428.077 kb on - strand, within IAI46_01995at 428.136 kb on + strand, within IAI46_01995at 428.137 kb on - strand, within IAI46_01995at 428.137 kb on - strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.139 kb on + strand, within IAI46_01995at 428.140 kb on - strand, within IAI46_01995at 428.140 kb on - strand, within IAI46_01995at 428.140 kb on - strand, within IAI46_01995at 428.169 kb on + strand, within IAI46_01995at 428.170 kb on - strand, within IAI46_01995at 428.170 kb on - strand, within IAI46_01995at 428.283 kb on + strand, within IAI46_01995at 428.293 kb on + strand, within IAI46_01995at 428.313 kb on + strand, within IAI46_01995at 428.314 kb on - strand, within IAI46_01995at 428.314 kb on - strand, within IAI46_01995at 428.315 kb on + strand, within IAI46_01995at 428.315 kb on + strand, within IAI46_01995at 428.315 kb on + strand, within IAI46_01995at 428.316 kb on - strand, within IAI46_01995at 428.316 kb on - strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.319 kb on + strand, within IAI46_01995at 428.323 kb on - strand, within IAI46_01995at 428.382 kb on + strand, within IAI46_01995at 428.382 kb on + strand, within IAI46_01995at 428.383 kb on - strand, within IAI46_01995at 428.383 kb on - strand, within IAI46_01995at 428.399 kb on + strand, within IAI46_01995at 428.400 kb on - strand, within IAI46_01995at 428.457 kb on + strand, within IAI46_01995at 428.457 kb on + strand, within IAI46_01995at 428.457 kb on + strand, within IAI46_01995at 428.464 kb on + strand, within IAI46_01995at 428.464 kb on + strand, within IAI46_01995at 428.464 kb on + strand, within IAI46_01995at 428.465 kb on - strand, within IAI46_01995at 428.606 kb on + strand, within IAI46_01995at 428.660 kb on + strand, within IAI46_01995at 428.660 kb on + strand, within IAI46_01995at 428.661 kb on - strand, within IAI46_01995at 428.661 kb on - strand, within IAI46_01995at 428.730 kb on - strand, within IAI46_01995at 428.732 kb on + strand, within IAI46_01995at 428.732 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.757 kb on + strand, within IAI46_01995at 428.773 kb on + strand, within IAI46_01995at 428.774 kb on - strand, within IAI46_01995at 428.774 kb on - strand, within IAI46_01995at 428.774 kb on - strand, within IAI46_01995at 428.832 kb on + strandat 428.885 kb on - strandat 429.005 kb on + strandat 429.005 kb on + strandat 429.006 kb on - strandat 429.022 kb on - strand, within IAI46_02000at 429.123 kb on - strand, within IAI46_02000at 429.206 kb on + strand, within IAI46_02000at 429.243 kb on - strand, within IAI46_02000at 429.342 kb on + strand, within IAI46_02000at 429.343 kb on - strand, within IAI46_02000at 429.753 kb on - strand, within IAI46_02000at 429.753 kb on - strand, within IAI46_02000at 429.788 kb on + strand, within IAI46_02000at 429.788 kb on + strand, within IAI46_02000at 429.848 kb on + strand, within IAI46_02000at 429.963 kb on - strandat 430.018 kb on + strandat 430.019 kb on - strandat 430.039 kb on + strandat 430.040 kb on - strandat 430.043 kb on + strandat 430.043 kb on + strandat 430.043 kb on + strandat 430.059 kb on + strandat 430.060 kb on - strandat 430.083 kb on + strandat 430.084 kb on - strandat 430.114 kb on - strandat 430.149 kb on + strandat 430.149 kb on + strandat 430.149 kb on + strandat 430.150 kb on - strandat 430.150 kb on - strandat 430.150 kb on - strandat 430.150 kb on - strandat 430.156 kb on + strandat 430.157 kb on - strandat 430.157 kb on - strandat 430.157 kb on - strandat 430.157 kb on - strandat 430.195 kb on + strandat 430.196 kb on - strandat 430.196 kb on - strandat 430.196 kb on - strandat 430.251 kb on + strandat 430.251 kb on + strandat 430.251 kb on + strandat 430.251 kb on + strandat 430.252 kb on - strandat 430.525 kb on - strand, within IAI46_02005at 430.534 kb on + strand, within IAI46_02005at 430.534 kb on + strand, within IAI46_02005at 430.535 kb on - strand, within IAI46_02005at 430.535 kb on - strand, within IAI46_02005at 430.535 kb on - strand, within IAI46_02005at 430.581 kb on - strand, within IAI46_02005at 430.687 kb on + strand, within IAI46_02005at 430.688 kb on - strand, within IAI46_02005at 430.688 kb on - strand, within IAI46_02005at 430.688 kb on - strand, within IAI46_02005at 430.741 kb on + strand, within IAI46_02005at 430.741 kb on + strand, within IAI46_02005at 430.799 kb on - strand, within IAI46_02005at 430.831 kb on + strand, within IAI46_02005at 430.832 kb on - strand, within IAI46_02005at 430.847 kb on + strand, within IAI46_02005at 430.847 kb on + strand, within IAI46_02005at 430.882 kb on + strand, within IAI46_02005at 430.941 kb on + strand, within IAI46_02005at 430.968 kb on + strand, within IAI46_02005at 431.027 kb on + strand, within IAI46_02005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
remove
428,064 + IAI46_01995 0.27 -0.3
428,065 - IAI46_01995 0.27 -0.6
428,076 + IAI46_01995 0.28 -1.2
428,076 + IAI46_01995 0.28 +0.3
428,076 + IAI46_01995 0.28 -1.0
428,077 - IAI46_01995 0.28 -0.0
428,136 + IAI46_01995 0.33 -0.5
428,137 - IAI46_01995 0.33 -0.6
428,137 - IAI46_01995 0.33 +0.1
428,139 + IAI46_01995 0.34 -0.2
428,139 + IAI46_01995 0.34 +0.2
428,139 + IAI46_01995 0.34 -1.2
428,139 + IAI46_01995 0.34 +0.6
428,139 + IAI46_01995 0.34 +0.4
428,139 + IAI46_01995 0.34 +0.3
428,139 + IAI46_01995 0.34 -0.1
428,140 - IAI46_01995 0.34 -0.2
428,140 - IAI46_01995 0.34 -0.9
428,140 - IAI46_01995 0.34 +0.3
428,169 + IAI46_01995 0.36 +1.5
428,170 - IAI46_01995 0.36 +0.1
428,170 - IAI46_01995 0.36 +0.5
428,283 + IAI46_01995 0.46 +0.9
428,293 + IAI46_01995 0.47 +0.4
428,313 + IAI46_01995 0.49 -0.8
428,314 - IAI46_01995 0.49 -0.0
428,314 - IAI46_01995 0.49 -0.8
428,315 + IAI46_01995 0.49 +1.2
428,315 + IAI46_01995 0.49 -0.4
428,315 + IAI46_01995 0.49 +0.3
428,316 - IAI46_01995 0.49 +1.0
428,316 - IAI46_01995 0.49 -0.2
428,319 + IAI46_01995 0.49 +0.2
428,319 + IAI46_01995 0.49 -0.0
428,319 + IAI46_01995 0.49 +0.1
428,319 + IAI46_01995 0.49 -0.3
428,323 - IAI46_01995 0.49 +0.5
428,382 + IAI46_01995 0.55 -0.7
428,382 + IAI46_01995 0.55 -0.2
428,383 - IAI46_01995 0.55 +0.6
428,383 - IAI46_01995 0.55 +0.1
428,399 + IAI46_01995 0.56 -0.6
428,400 - IAI46_01995 0.56 +0.2
428,457 + IAI46_01995 0.61 +0.2
428,457 + IAI46_01995 0.61 -0.1
428,457 + IAI46_01995 0.61 -0.1
428,464 + IAI46_01995 0.62 -0.2
428,464 + IAI46_01995 0.62 -0.3
428,464 + IAI46_01995 0.62 -0.5
428,465 - IAI46_01995 0.62 +0.4
428,606 + IAI46_01995 0.74 +0.7
428,660 + IAI46_01995 0.79 +0.9
428,660 + IAI46_01995 0.79 +0.7
428,661 - IAI46_01995 0.79 -0.7
428,661 - IAI46_01995 0.79 -0.2
428,730 - IAI46_01995 0.85 +0.2
428,732 + IAI46_01995 0.85 +0.2
428,732 + IAI46_01995 0.85 -0.7
428,757 + IAI46_01995 0.87 -0.5
428,757 + IAI46_01995 0.87 -1.2
428,757 + IAI46_01995 0.87 +1.0
428,757 + IAI46_01995 0.87 +1.2
428,773 + IAI46_01995 0.88 +0.3
428,774 - IAI46_01995 0.88 +0.2
428,774 - IAI46_01995 0.88 -0.9
428,774 - IAI46_01995 0.88 -0.8
428,832 + -0.0
428,885 - +0.1
429,005 + -0.1
429,005 + +0.8
429,006 - +0.1
429,022 - IAI46_02000 0.10 -0.6
429,123 - IAI46_02000 0.19 +0.4
429,206 + IAI46_02000 0.27 -0.3
429,243 - IAI46_02000 0.30 +0.4
429,342 + IAI46_02000 0.38 +2.2
429,343 - IAI46_02000 0.38 -0.1
429,753 - IAI46_02000 0.74 -1.2
429,753 - IAI46_02000 0.74 -0.3
429,788 + IAI46_02000 0.77 -0.1
429,788 + IAI46_02000 0.77 -0.5
429,848 + IAI46_02000 0.83 +0.7
429,963 - +0.4
430,018 + +0.2
430,019 - +0.4
430,039 + -0.2
430,040 - +0.3
430,043 + -0.7
430,043 + +1.0
430,043 + +0.5
430,059 + +1.5
430,060 - -0.1
430,083 + -0.9
430,084 - +0.2
430,114 - +0.1
430,149 + +0.3
430,149 + -0.1
430,149 + +0.3
430,150 - +0.2
430,150 - +1.2
430,150 - +1.5
430,150 - +0.3
430,156 + +0.2
430,157 - -0.3
430,157 - -0.2
430,157 - +0.2
430,157 - -1.5
430,195 + +1.2
430,196 - +0.8
430,196 - +0.1
430,196 - +0.8
430,251 + +0.9
430,251 + +0.1
430,251 + +0.2
430,251 + +1.8
430,252 - -0.5
430,525 - IAI46_02005 0.33 -0.0
430,534 + IAI46_02005 0.34 +0.5
430,534 + IAI46_02005 0.34 +0.8
430,535 - IAI46_02005 0.34 +0.1
430,535 - IAI46_02005 0.34 -0.0
430,535 - IAI46_02005 0.34 -1.1
430,581 - IAI46_02005 0.38 +0.1
430,687 + IAI46_02005 0.48 -0.6
430,688 - IAI46_02005 0.48 +0.2
430,688 - IAI46_02005 0.48 +0.5
430,688 - IAI46_02005 0.48 +0.2
430,741 + IAI46_02005 0.53 +0.1
430,741 + IAI46_02005 0.53 +0.5
430,799 - IAI46_02005 0.58 +0.1
430,831 + IAI46_02005 0.61 +0.8
430,832 - IAI46_02005 0.61 -0.2
430,847 + IAI46_02005 0.62 -0.0
430,847 + IAI46_02005 0.62 -1.0
430,882 + IAI46_02005 0.65 +0.1
430,941 + IAI46_02005 0.70 -0.3
430,968 + IAI46_02005 0.73 +0.5
431,027 + IAI46_02005 0.78 +0.0

Or see this region's nucleotide sequence