Strain Fitness in Serratia liquefaciens MT49 around IAI46_01140

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01135 and IAI46_01140 are separated by 117 nucleotidesIAI46_01140 and IAI46_01145 overlap by 1 nucleotidesIAI46_01145 and IAI46_01150 are separated by 35 nucleotides IAI46_01135: IAI46_01135 - MFS transporter, at 252,312 to 253,508 _01135 IAI46_01140: IAI46_01140 - Xaa-Pro dipeptidase, at 253,626 to 254,957 _01140 IAI46_01145: IAI46_01145 - IMPACT family protein, at 254,957 to 255,571 _01145 IAI46_01150: IAI46_01150 - Trk system potassium transporter TrkH, at 255,607 to 257,058 _01150 Position (kb) 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 252.638 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.699 kb on - strand, within IAI46_01135at 252.711 kb on - strand, within IAI46_01135at 252.814 kb on - strand, within IAI46_01135at 252.838 kb on + strand, within IAI46_01135at 252.838 kb on + strand, within IAI46_01135at 252.839 kb on - strand, within IAI46_01135at 252.875 kb on + strand, within IAI46_01135at 252.875 kb on + strand, within IAI46_01135at 252.876 kb on - strand, within IAI46_01135at 252.940 kb on - strand, within IAI46_01135at 252.995 kb on - strand, within IAI46_01135at 252.995 kb on - strand, within IAI46_01135at 253.004 kb on + strand, within IAI46_01135at 253.004 kb on + strand, within IAI46_01135at 253.007 kb on + strand, within IAI46_01135at 253.007 kb on + strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.008 kb on - strand, within IAI46_01135at 253.038 kb on - strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.040 kb on + strand, within IAI46_01135at 253.041 kb on - strand, within IAI46_01135at 253.041 kb on - strand, within IAI46_01135at 253.102 kb on + strand, within IAI46_01135at 253.102 kb on + strand, within IAI46_01135at 253.103 kb on - strand, within IAI46_01135at 253.103 kb on - strand, within IAI46_01135at 253.108 kb on - strand, within IAI46_01135at 253.113 kb on - strand, within IAI46_01135at 253.174 kb on + strand, within IAI46_01135at 253.174 kb on + strand, within IAI46_01135at 253.184 kb on + strand, within IAI46_01135at 253.185 kb on - strand, within IAI46_01135at 253.193 kb on + strand, within IAI46_01135at 253.275 kb on + strand, within IAI46_01135at 253.276 kb on - strand, within IAI46_01135at 253.303 kb on + strand, within IAI46_01135at 253.304 kb on - strand, within IAI46_01135at 253.304 kb on - strand, within IAI46_01135at 253.314 kb on - strand, within IAI46_01135at 253.319 kb on + strand, within IAI46_01135at 253.320 kb on - strand, within IAI46_01135at 253.359 kb on + strand, within IAI46_01135at 253.359 kb on + strand, within IAI46_01135at 253.360 kb on - strand, within IAI46_01135at 253.360 kb on - strand, within IAI46_01135at 253.404 kb on - strandat 253.476 kb on - strandat 253.494 kb on - strandat 253.507 kb on - strandat 253.516 kb on + strandat 253.516 kb on + strandat 253.516 kb on + strandat 253.517 kb on - strandat 253.563 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.581 kb on + strandat 253.601 kb on + strandat 253.601 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.612 kb on - strandat 253.619 kb on + strandat 253.647 kb on + strandat 253.647 kb on + strandat 253.648 kb on - strandat 253.648 kb on - strandat 253.888 kb on - strand, within IAI46_01140at 253.896 kb on - strand, within IAI46_01140at 254.008 kb on - strand, within IAI46_01140at 254.008 kb on - strand, within IAI46_01140at 254.008 kb on - strand, within IAI46_01140at 254.010 kb on - strand, within IAI46_01140at 254.214 kb on - strand, within IAI46_01140at 254.227 kb on - strand, within IAI46_01140at 254.273 kb on + strand, within IAI46_01140at 254.273 kb on + strand, within IAI46_01140at 254.274 kb on - strand, within IAI46_01140at 254.310 kb on + strand, within IAI46_01140at 254.310 kb on + strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.311 kb on - strand, within IAI46_01140at 254.377 kb on - strand, within IAI46_01140at 254.378 kb on + strand, within IAI46_01140at 254.379 kb on - strand, within IAI46_01140at 254.405 kb on + strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.406 kb on - strand, within IAI46_01140at 254.409 kb on + strand, within IAI46_01140at 254.409 kb on + strand, within IAI46_01140at 254.409 kb on + strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.410 kb on - strand, within IAI46_01140at 254.459 kb on + strand, within IAI46_01140at 254.459 kb on + strand, within IAI46_01140at 254.460 kb on - strand, within IAI46_01140at 254.514 kb on + strand, within IAI46_01140at 254.552 kb on + strand, within IAI46_01140at 254.553 kb on - strand, within IAI46_01140at 254.610 kb on - strand, within IAI46_01140at 254.659 kb on + strand, within IAI46_01140at 254.659 kb on + strand, within IAI46_01140at 254.660 kb on - strand, within IAI46_01140at 254.679 kb on - strand, within IAI46_01140at 254.696 kb on + strand, within IAI46_01140at 254.696 kb on + strand, within IAI46_01140at 254.696 kb on + strand, within IAI46_01140at 254.697 kb on - strand, within IAI46_01140at 254.697 kb on - strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.717 kb on + strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.718 kb on - strand, within IAI46_01140at 254.721 kb on + strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.722 kb on - strand, within IAI46_01140at 254.749 kb on + strand, within IAI46_01140at 254.749 kb on + strand, within IAI46_01140at 254.749 kb on + strand, within IAI46_01140at 254.750 kb on - strand, within IAI46_01140at 254.788 kb on - strand, within IAI46_01140at 254.788 kb on - strand, within IAI46_01140at 254.788 kb on - strand, within IAI46_01140at 254.792 kb on + strand, within IAI46_01140at 254.875 kb on - strandat 254.900 kb on + strandat 254.967 kb on - strandat 255.081 kb on + strand, within IAI46_01145at 255.082 kb on - strand, within IAI46_01145at 255.082 kb on - strand, within IAI46_01145at 255.156 kb on + strand, within IAI46_01145at 255.156 kb on + strand, within IAI46_01145at 255.156 kb on + strand, within IAI46_01145at 255.202 kb on + strand, within IAI46_01145at 255.202 kb on + strand, within IAI46_01145at 255.203 kb on - strand, within IAI46_01145at 255.217 kb on + strand, within IAI46_01145at 255.217 kb on + strand, within IAI46_01145at 255.256 kb on - strand, within IAI46_01145at 255.256 kb on - strand, within IAI46_01145at 255.256 kb on - strand, within IAI46_01145at 255.260 kb on + strand, within IAI46_01145at 255.261 kb on - strand, within IAI46_01145at 255.261 kb on - strand, within IAI46_01145at 255.261 kb on - strand, within IAI46_01145at 255.297 kb on + strand, within IAI46_01145at 255.330 kb on + strand, within IAI46_01145at 255.330 kb on + strand, within IAI46_01145at 255.350 kb on + strand, within IAI46_01145at 255.351 kb on - strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.373 kb on + strand, within IAI46_01145at 255.374 kb on - strand, within IAI46_01145at 255.390 kb on - strand, within IAI46_01145at 255.390 kb on - strand, within IAI46_01145at 255.444 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.455 kb on + strand, within IAI46_01145at 255.486 kb on + strand, within IAI46_01145at 255.552 kb on + strandat 255.553 kb on - strandat 255.553 kb on - strandat 255.570 kb on - strandat 255.591 kb on + strandat 255.592 kb on - strandat 255.624 kb on + strandat 255.672 kb on + strandat 255.672 kb on + strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.696 kb on - strandat 255.697 kb on + strandat 255.698 kb on - strandat 255.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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252,638 - IAI46_01135 0.27 +0.1
252,699 - IAI46_01135 0.32 +0.9
252,699 - IAI46_01135 0.32 -0.1
252,699 - IAI46_01135 0.32 +0.5
252,699 - IAI46_01135 0.32 +0.1
252,699 - IAI46_01135 0.32 +0.3
252,711 - IAI46_01135 0.33 -0.3
252,814 - IAI46_01135 0.42 +0.0
252,838 + IAI46_01135 0.44 -2.7
252,838 + IAI46_01135 0.44 -1.3
252,839 - IAI46_01135 0.44 -0.4
252,875 + IAI46_01135 0.47 +0.4
252,875 + IAI46_01135 0.47 +0.7
252,876 - IAI46_01135 0.47 -0.2
252,940 - IAI46_01135 0.52 +0.2
252,995 - IAI46_01135 0.57 +0.4
252,995 - IAI46_01135 0.57 +0.4
253,004 + IAI46_01135 0.58 -0.3
253,004 + IAI46_01135 0.58 +0.3
253,007 + IAI46_01135 0.58 -0.8
253,007 + IAI46_01135 0.58 -0.2
253,008 - IAI46_01135 0.58 +0.2
253,008 - IAI46_01135 0.58 -0.0
253,008 - IAI46_01135 0.58 -0.3
253,008 - IAI46_01135 0.58 +0.1
253,038 - IAI46_01135 0.61 -0.8
253,040 + IAI46_01135 0.61 +0.0
253,040 + IAI46_01135 0.61 +0.4
253,040 + IAI46_01135 0.61 -0.1
253,040 + IAI46_01135 0.61 +0.2
253,041 - IAI46_01135 0.61 +0.3
253,041 - IAI46_01135 0.61 -0.8
253,102 + IAI46_01135 0.66 +0.3
253,102 + IAI46_01135 0.66 +0.1
253,103 - IAI46_01135 0.66 -0.1
253,103 - IAI46_01135 0.66 +0.7
253,108 - IAI46_01135 0.66 +0.2
253,113 - IAI46_01135 0.67 -0.4
253,174 + IAI46_01135 0.72 +0.5
253,174 + IAI46_01135 0.72 +1.1
253,184 + IAI46_01135 0.73 +0.2
253,185 - IAI46_01135 0.73 -0.1
253,193 + IAI46_01135 0.74 +0.8
253,275 + IAI46_01135 0.80 +0.5
253,276 - IAI46_01135 0.81 -0.1
253,303 + IAI46_01135 0.83 +0.0
253,304 - IAI46_01135 0.83 +0.8
253,304 - IAI46_01135 0.83 +0.2
253,314 - IAI46_01135 0.84 -0.2
253,319 + IAI46_01135 0.84 -1.2
253,320 - IAI46_01135 0.84 +0.0
253,359 + IAI46_01135 0.87 -1.0
253,359 + IAI46_01135 0.87 -0.2
253,360 - IAI46_01135 0.88 -0.3
253,360 - IAI46_01135 0.88 -0.7
253,404 - -0.2
253,476 - -0.4
253,494 - -0.2
253,507 - -0.3
253,516 + +0.0
253,516 + +0.6
253,516 + +1.1
253,517 - -0.7
253,563 + +0.2
253,581 + +0.1
253,581 + -0.1
253,581 + +0.4
253,581 + +0.4
253,581 + +0.6
253,601 + +0.3
253,601 + +0.1
253,611 + +1.0
253,611 + +0.1
253,611 + +0.1
253,611 + +1.4
253,611 + +1.2
253,611 + +0.7
253,612 - -0.0
253,612 - -0.2
253,612 - -0.9
253,612 - -0.6
253,612 - -0.6
253,619 + +0.5
253,647 + -0.7
253,647 + +0.0
253,648 - +1.2
253,648 - +0.2
253,888 - IAI46_01140 0.20 +0.2
253,896 - IAI46_01140 0.20 +0.4
254,008 - IAI46_01140 0.29 +0.1
254,008 - IAI46_01140 0.29 +0.3
254,008 - IAI46_01140 0.29 +0.3
254,010 - IAI46_01140 0.29 -0.6
254,214 - IAI46_01140 0.44 +0.7
254,227 - IAI46_01140 0.45 -0.4
254,273 + IAI46_01140 0.49 +0.2
254,273 + IAI46_01140 0.49 +0.1
254,274 - IAI46_01140 0.49 +1.1
254,310 + IAI46_01140 0.51 +0.8
254,310 + IAI46_01140 0.51 +0.2
254,311 - IAI46_01140 0.51 +0.8
254,311 - IAI46_01140 0.51 +0.0
254,311 - IAI46_01140 0.51 -0.2
254,311 - IAI46_01140 0.51 -1.4
254,311 - IAI46_01140 0.51 -1.2
254,377 - IAI46_01140 0.56 -0.1
254,378 + IAI46_01140 0.56 -0.1
254,379 - IAI46_01140 0.57 +0.2
254,405 + IAI46_01140 0.58 +0.8
254,406 - IAI46_01140 0.59 -0.8
254,406 - IAI46_01140 0.59 -0.6
254,406 - IAI46_01140 0.59 -0.8
254,406 - IAI46_01140 0.59 +0.7
254,406 - IAI46_01140 0.59 -0.0
254,409 + IAI46_01140 0.59 -0.1
254,409 + IAI46_01140 0.59 +0.1
254,409 + IAI46_01140 0.59 +0.2
254,410 - IAI46_01140 0.59 +0.1
254,410 - IAI46_01140 0.59 +1.4
254,410 - IAI46_01140 0.59 -0.3
254,410 - IAI46_01140 0.59 +0.1
254,410 - IAI46_01140 0.59 +0.1
254,410 - IAI46_01140 0.59 -1.2
254,459 + IAI46_01140 0.63 -1.0
254,459 + IAI46_01140 0.63 +0.4
254,460 - IAI46_01140 0.63 +1.4
254,514 + IAI46_01140 0.67 -0.3
254,552 + IAI46_01140 0.70 +0.1
254,553 - IAI46_01140 0.70 +0.1
254,610 - IAI46_01140 0.74 +0.5
254,659 + IAI46_01140 0.78 +0.5
254,659 + IAI46_01140 0.78 +0.8
254,660 - IAI46_01140 0.78 +1.3
254,679 - IAI46_01140 0.79 +0.1
254,696 + IAI46_01140 0.80 +2.4
254,696 + IAI46_01140 0.80 +0.4
254,696 + IAI46_01140 0.80 -0.9
254,697 - IAI46_01140 0.80 +0.2
254,697 - IAI46_01140 0.80 +0.2
254,717 + IAI46_01140 0.82 -0.1
254,717 + IAI46_01140 0.82 -0.7
254,717 + IAI46_01140 0.82 -0.2
254,717 + IAI46_01140 0.82 +0.3
254,717 + IAI46_01140 0.82 +0.2
254,717 + IAI46_01140 0.82 -1.1
254,718 - IAI46_01140 0.82 -0.4
254,718 - IAI46_01140 0.82 +0.4
254,718 - IAI46_01140 0.82 +0.2
254,718 - IAI46_01140 0.82 +0.8
254,718 - IAI46_01140 0.82 +0.3
254,718 - IAI46_01140 0.82 -0.3
254,718 - IAI46_01140 0.82 +0.2
254,718 - IAI46_01140 0.82 +0.7
254,718 - IAI46_01140 0.82 +0.2
254,718 - IAI46_01140 0.82 +0.5
254,718 - IAI46_01140 0.82 +0.4
254,718 - IAI46_01140 0.82 +0.2
254,718 - IAI46_01140 0.82 +0.4
254,718 - IAI46_01140 0.82 -0.5
254,718 - IAI46_01140 0.82 -0.5
254,721 + IAI46_01140 0.82 +0.0
254,722 - IAI46_01140 0.82 +0.2
254,722 - IAI46_01140 0.82 +0.4
254,722 - IAI46_01140 0.82 -0.5
254,722 - IAI46_01140 0.82 +0.4
254,749 + IAI46_01140 0.84 -0.7
254,749 + IAI46_01140 0.84 +0.1
254,749 + IAI46_01140 0.84 -0.4
254,750 - IAI46_01140 0.84 -0.1
254,788 - IAI46_01140 0.87 +0.4
254,788 - IAI46_01140 0.87 +0.3
254,788 - IAI46_01140 0.87 -0.1
254,792 + IAI46_01140 0.88 +0.5
254,875 - -0.3
254,900 + +0.2
254,967 - +1.4
255,081 + IAI46_01145 0.20 +1.1
255,082 - IAI46_01145 0.20 +1.0
255,082 - IAI46_01145 0.20 +1.1
255,156 + IAI46_01145 0.32 -0.1
255,156 + IAI46_01145 0.32 +1.3
255,156 + IAI46_01145 0.32 +0.7
255,202 + IAI46_01145 0.40 +0.0
255,202 + IAI46_01145 0.40 +0.6
255,203 - IAI46_01145 0.40 +0.3
255,217 + IAI46_01145 0.42 -0.3
255,217 + IAI46_01145 0.42 -0.2
255,256 - IAI46_01145 0.49 -0.2
255,256 - IAI46_01145 0.49 +0.2
255,256 - IAI46_01145 0.49 -0.4
255,260 + IAI46_01145 0.49 -0.3
255,261 - IAI46_01145 0.49 +0.5
255,261 - IAI46_01145 0.49 -0.9
255,261 - IAI46_01145 0.49 -0.1
255,297 + IAI46_01145 0.55 +0.5
255,330 + IAI46_01145 0.61 +0.6
255,330 + IAI46_01145 0.61 -2.3
255,350 + IAI46_01145 0.64 +0.2
255,351 - IAI46_01145 0.64 -2.6
255,373 + IAI46_01145 0.68 +0.2
255,373 + IAI46_01145 0.68 -0.7
255,373 + IAI46_01145 0.68 +0.1
255,373 + IAI46_01145 0.68 +0.0
255,373 + IAI46_01145 0.68 +0.5
255,374 - IAI46_01145 0.68 -0.4
255,390 - IAI46_01145 0.70 +0.2
255,390 - IAI46_01145 0.70 -0.5
255,444 + IAI46_01145 0.79 -0.1
255,455 + IAI46_01145 0.81 +0.8
255,455 + IAI46_01145 0.81 +0.3
255,455 + IAI46_01145 0.81 +1.1
255,455 + IAI46_01145 0.81 -1.8
255,486 + IAI46_01145 0.86 +0.4
255,552 + +0.9
255,553 - -0.1
255,553 - -0.2
255,570 - -0.5
255,591 + -0.6
255,592 - -0.7
255,624 + -0.9
255,672 + -1.3
255,672 + +0.1
255,696 - +0.6
255,696 - -1.1
255,696 - -0.7
255,697 + -0.9
255,698 - -0.4
255,698 - -0.5

Or see this region's nucleotide sequence