Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00950 and IAI46_00955 overlap by 4 nucleotides IAI46_00955 and IAI46_00960 are separated by 406 nucleotides IAI46_00960 and IAI46_00965 are separated by 283 nucleotides
IAI46_00950: IAI46_00950 - DUF3142 domain-containing protein, at 212,980 to 214,197
_00950
IAI46_00955: IAI46_00955 - aspartate 1-decarboxylase autocleavage activator PanM, at 214,194 to 214,586
_00955
IAI46_00960: IAI46_00960 - branched-chain amino acid ABC transporter substrate-binding protein, at 214,993 to 216,108
_00960
IAI46_00965: IAI46_00965 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 216,392 to 217,318
_00965
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.021 kb on - strand, within IAI46_00950 at 214.088 kb on + strand at 214.088 kb on + strand at 214.089 kb on - strand at 214.089 kb on - strand at 214.089 kb on - strand at 214.089 kb on - strand at 214.154 kb on - strand at 214.248 kb on - strand, within IAI46_00955 at 214.306 kb on - strand, within IAI46_00955 at 214.343 kb on - strand, within IAI46_00955 at 214.343 kb on - strand, within IAI46_00955 at 214.472 kb on + strand, within IAI46_00955 at 214.473 kb on - strand, within IAI46_00955 at 214.574 kb on + strand at 214.575 kb on - strand at 214.606 kb on - strand at 214.623 kb on + strand at 214.623 kb on + strand at 214.624 kb on - strand at 214.624 kb on - strand at 214.626 kb on + strand at 214.626 kb on + strand at 214.626 kb on + strand at 214.627 kb on - strand at 214.627 kb on - strand at 214.627 kb on - strand at 214.627 kb on - strand at 214.661 kb on + strand at 214.706 kb on + strand at 214.706 kb on + strand at 214.710 kb on + strand at 214.710 kb on + strand at 214.710 kb on + strand at 214.714 kb on + strand at 214.715 kb on - strand at 214.715 kb on - strand at 214.715 kb on - strand at 214.719 kb on - strand at 214.738 kb on + strand at 214.739 kb on - strand at 214.929 kb on - strand at 214.932 kb on + strand at 214.932 kb on + strand at 214.962 kb on + strand at 214.963 kb on - strand at 215.011 kb on - strand at 215.031 kb on + strand at 215.031 kb on + strand at 215.116 kb on + strand, within IAI46_00960 at 215.209 kb on + strand, within IAI46_00960 at 215.209 kb on + strand, within IAI46_00960 at 215.210 kb on - strand, within IAI46_00960 at 215.258 kb on + strand, within IAI46_00960 at 215.258 kb on + strand, within IAI46_00960 at 215.258 kb on + strand, within IAI46_00960 at 215.258 kb on + strand, within IAI46_00960 at 215.258 kb on + strand, within IAI46_00960 at 215.259 kb on - strand, within IAI46_00960 at 215.279 kb on - strand, within IAI46_00960 at 215.329 kb on + strand, within IAI46_00960 at 215.329 kb on + strand, within IAI46_00960 at 215.329 kb on + strand, within IAI46_00960 at 215.329 kb on + strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.330 kb on - strand, within IAI46_00960 at 215.370 kb on + strand, within IAI46_00960 at 215.412 kb on + strand, within IAI46_00960 at 215.412 kb on + strand, within IAI46_00960 at 215.412 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.455 kb on + strand, within IAI46_00960 at 215.456 kb on - strand, within IAI46_00960 at 215.513 kb on - strand, within IAI46_00960 at 215.586 kb on + strand, within IAI46_00960 at 215.656 kb on + strand, within IAI46_00960 at 215.656 kb on + strand, within IAI46_00960 at 215.730 kb on + strand, within IAI46_00960 at 215.770 kb on - strand, within IAI46_00960 at 215.812 kb on - strand, within IAI46_00960 at 215.812 kb on - strand, within IAI46_00960 at 215.819 kb on - strand, within IAI46_00960 at 215.819 kb on - strand, within IAI46_00960 at 215.859 kb on + strand, within IAI46_00960 at 215.905 kb on + strand, within IAI46_00960 at 215.905 kb on + strand, within IAI46_00960 at 216.046 kb on - strand at 216.106 kb on + strand at 216.107 kb on - strand at 216.110 kb on - strand at 216.110 kb on - strand at 216.111 kb on + strand at 216.111 kb on + strand at 216.111 kb on + strand at 216.111 kb on + strand at 216.112 kb on - strand at 216.168 kb on + strand at 216.168 kb on + strand at 216.168 kb on + strand at 216.169 kb on - strand at 216.169 kb on - strand at 216.173 kb on + strand at 216.174 kb on - strand at 216.176 kb on + strand at 216.176 kb on + strand at 216.176 kb on + strand at 216.176 kb on + strand at 216.177 kb on - strand at 216.177 kb on - strand at 216.192 kb on + strand at 216.193 kb on - strand at 216.208 kb on - strand at 216.232 kb on + strand at 216.233 kb on - strand at 216.234 kb on + strand at 216.245 kb on - strand at 216.280 kb on - strand at 216.364 kb on + strand at 216.366 kb on + strand at 216.366 kb on + strand at 216.366 kb on + strand at 216.366 kb on + strand at 216.367 kb on - strand at 216.386 kb on + strand at 216.387 kb on - strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.391 kb on + strand at 216.392 kb on - strand at 216.392 kb on - strand at 216.392 kb on - strand at 216.392 kb on - strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.455 kb on + strand at 216.456 kb on - strand at 216.456 kb on - strand at 216.456 kb on - strand at 216.456 kb on - strand at 216.476 kb on + strand at 216.488 kb on + strand, within IAI46_00965 at 216.488 kb on + strand, within IAI46_00965 at 216.488 kb on + strand, within IAI46_00965 at 216.489 kb on - strand, within IAI46_00965 at 216.489 kb on - strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.530 kb on + strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.531 kb on - strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.532 kb on + strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.533 kb on - strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.545 kb on + strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.546 kb on - strand, within IAI46_00965 at 216.557 kb on - strand, within IAI46_00965 at 216.650 kb on + strand, within IAI46_00965 at 216.726 kb on + strand, within IAI46_00965 at 216.752 kb on + strand, within IAI46_00965 at 216.847 kb on + strand, within IAI46_00965 at 216.848 kb on - strand, within IAI46_00965 at 216.868 kb on + strand, within IAI46_00965 at 216.868 kb on + strand, within IAI46_00965 at 216.869 kb on - strand, within IAI46_00965 at 216.928 kb on + strand, within IAI46_00965 at 216.929 kb on - strand, within IAI46_00965 at 217.054 kb on - strand, within IAI46_00965 at 217.070 kb on + strand, within IAI46_00965 at 217.070 kb on + strand, within IAI46_00965 at 217.071 kb on - strand, within IAI46_00965 at 217.071 kb on - strand, within IAI46_00965 at 217.071 kb on - strand, within IAI46_00965 at 217.089 kb on - strand, within IAI46_00965 at 217.089 kb on - strand, within IAI46_00965 at 217.090 kb on + strand, within IAI46_00965
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 214,021 - IAI46_00950 0.85 +0.2 214,088 + -0.7 214,088 + +0.2 214,089 - +0.1 214,089 - -0.1 214,089 - +0.7 214,089 - -0.3 214,154 - +0.3 214,248 - IAI46_00955 0.14 +0.3 214,306 - IAI46_00955 0.28 +0.2 214,343 - IAI46_00955 0.38 +0.0 214,343 - IAI46_00955 0.38 +0.8 214,472 + IAI46_00955 0.71 -0.5 214,473 - IAI46_00955 0.71 -0.6 214,574 + -0.4 214,575 - -0.7 214,606 - +0.4 214,623 + +1.2 214,623 + +0.1 214,624 - +1.1 214,624 - +0.4 214,626 + +0.1 214,626 + -0.2 214,626 + +0.4 214,627 - +0.4 214,627 - +0.4 214,627 - +0.4 214,627 - +0.3 214,661 + -0.1 214,706 + +0.5 214,706 + +0.3 214,710 + -0.3 214,710 + +0.6 214,710 + +0.1 214,714 + +0.8 214,715 - -0.1 214,715 - +0.9 214,715 - -0.2 214,719 - +0.4 214,738 + -0.0 214,739 - -0.2 214,929 - +0.2 214,932 + -0.5 214,932 + -0.6 214,962 + +0.5 214,963 - +0.6 215,011 - +0.6 215,031 + +0.3 215,031 + -0.1 215,116 + IAI46_00960 0.11 +0.5 215,209 + IAI46_00960 0.19 +0.5 215,209 + IAI46_00960 0.19 +0.1 215,210 - IAI46_00960 0.19 +0.6 215,258 + IAI46_00960 0.24 -1.3 215,258 + IAI46_00960 0.24 -0.1 215,258 + IAI46_00960 0.24 +0.2 215,258 + IAI46_00960 0.24 +0.1 215,258 + IAI46_00960 0.24 -0.3 215,259 - IAI46_00960 0.24 -0.3 215,279 - IAI46_00960 0.26 +0.5 215,329 + IAI46_00960 0.30 +1.0 215,329 + IAI46_00960 0.30 -0.4 215,329 + IAI46_00960 0.30 -0.7 215,329 + IAI46_00960 0.30 +0.1 215,330 - IAI46_00960 0.30 -0.5 215,330 - IAI46_00960 0.30 +0.2 215,330 - IAI46_00960 0.30 -1.0 215,330 - IAI46_00960 0.30 -0.9 215,330 - IAI46_00960 0.30 +0.2 215,330 - IAI46_00960 0.30 +0.2 215,330 - IAI46_00960 0.30 +0.5 215,330 - IAI46_00960 0.30 -0.2 215,330 - IAI46_00960 0.30 -0.0 215,370 + IAI46_00960 0.34 +1.7 215,412 + IAI46_00960 0.38 -0.5 215,412 + IAI46_00960 0.38 -0.0 215,412 + IAI46_00960 0.38 -0.3 215,455 + IAI46_00960 0.41 -0.6 215,455 + IAI46_00960 0.41 -0.9 215,455 + IAI46_00960 0.41 -0.2 215,455 + IAI46_00960 0.41 -0.2 215,455 + IAI46_00960 0.41 +0.1 215,455 + IAI46_00960 0.41 -0.2 215,455 + IAI46_00960 0.41 +0.7 215,456 - IAI46_00960 0.41 -0.0 215,513 - IAI46_00960 0.47 +0.2 215,586 + IAI46_00960 0.53 -0.6 215,656 + IAI46_00960 0.59 +0.5 215,656 + IAI46_00960 0.59 +0.8 215,730 + IAI46_00960 0.66 -0.9 215,770 - IAI46_00960 0.70 +0.1 215,812 - IAI46_00960 0.73 -1.0 215,812 - IAI46_00960 0.73 -0.2 215,819 - IAI46_00960 0.74 -0.5 215,819 - IAI46_00960 0.74 -1.1 215,859 + IAI46_00960 0.78 +0.7 215,905 + IAI46_00960 0.82 +0.2 215,905 + IAI46_00960 0.82 +0.3 216,046 - +0.4 216,106 + +0.3 216,107 - -0.8 216,110 - +0.1 216,110 - +0.1 216,111 + +0.2 216,111 + +1.0 216,111 + -0.2 216,111 + -0.3 216,112 - -0.6 216,168 + -0.3 216,168 + -0.2 216,168 + +0.8 216,169 - +0.4 216,169 - -1.7 216,173 + -0.5 216,174 - +0.6 216,176 + +0.5 216,176 + -0.1 216,176 + +0.0 216,176 + +0.2 216,177 - +0.4 216,177 - +0.7 216,192 + +0.7 216,193 - +0.9 216,208 - -0.0 216,232 + -0.2 216,233 - +0.1 216,234 + +0.4 216,245 - -0.1 216,280 - +0.0 216,364 + -0.0 216,366 + +0.0 216,366 + -0.2 216,366 + -0.9 216,366 + -0.5 216,367 - +0.3 216,386 + -1.8 216,387 - -0.2 216,391 + -0.0 216,391 + -1.4 216,391 + +1.7 216,391 + +0.1 216,391 + -0.7 216,391 + -0.3 216,392 - +0.1 216,392 - +0.0 216,392 - -0.2 216,392 - +2.6 216,455 + -0.9 216,455 + +1.2 216,455 + +1.0 216,455 + -0.5 216,455 + -0.5 216,455 + -0.1 216,455 + +1.3 216,455 + +0.2 216,456 - -0.1 216,456 - +0.6 216,456 - +0.6 216,456 - +0.2 216,476 + +0.6 216,488 + IAI46_00965 0.10 +0.1 216,488 + IAI46_00965 0.10 +1.6 216,488 + IAI46_00965 0.10 +1.1 216,489 - IAI46_00965 0.10 +0.9 216,489 - IAI46_00965 0.10 +0.4 216,530 + IAI46_00965 0.15 +1.8 216,530 + IAI46_00965 0.15 -0.2 216,530 + IAI46_00965 0.15 +0.3 216,530 + IAI46_00965 0.15 -0.3 216,530 + IAI46_00965 0.15 -0.2 216,530 + IAI46_00965 0.15 +0.1 216,530 + IAI46_00965 0.15 +0.1 216,531 - IAI46_00965 0.15 +0.4 216,531 - IAI46_00965 0.15 -0.2 216,531 - IAI46_00965 0.15 -0.0 216,531 - IAI46_00965 0.15 +0.1 216,531 - IAI46_00965 0.15 +0.4 216,531 - IAI46_00965 0.15 -0.6 216,531 - IAI46_00965 0.15 +0.7 216,531 - IAI46_00965 0.15 -0.4 216,531 - IAI46_00965 0.15 +0.2 216,531 - IAI46_00965 0.15 +0.6 216,531 - IAI46_00965 0.15 +1.2 216,532 + IAI46_00965 0.15 +0.8 216,532 + IAI46_00965 0.15 +0.8 216,532 + IAI46_00965 0.15 +0.1 216,532 + IAI46_00965 0.15 +0.1 216,532 + IAI46_00965 0.15 -0.0 216,532 + IAI46_00965 0.15 -0.2 216,532 + IAI46_00965 0.15 -0.3 216,532 + IAI46_00965 0.15 +0.3 216,533 - IAI46_00965 0.15 -0.1 216,533 - IAI46_00965 0.15 +0.8 216,533 - IAI46_00965 0.15 +0.1 216,533 - IAI46_00965 0.15 +0.3 216,533 - IAI46_00965 0.15 +0.9 216,533 - IAI46_00965 0.15 +0.5 216,545 + IAI46_00965 0.17 +0.3 216,545 + IAI46_00965 0.17 -0.0 216,545 + IAI46_00965 0.17 +1.3 216,545 + IAI46_00965 0.17 +0.2 216,545 + IAI46_00965 0.17 -0.1 216,545 + IAI46_00965 0.17 +0.4 216,545 + IAI46_00965 0.17 +1.5 216,546 - IAI46_00965 0.17 -0.7 216,546 - IAI46_00965 0.17 +0.1 216,546 - IAI46_00965 0.17 -0.3 216,546 - IAI46_00965 0.17 -0.8 216,546 - IAI46_00965 0.17 -0.2 216,546 - IAI46_00965 0.17 +0.2 216,546 - IAI46_00965 0.17 -0.5 216,557 - IAI46_00965 0.18 +0.1 216,650 + IAI46_00965 0.28 -0.1 216,726 + IAI46_00965 0.36 -0.4 216,752 + IAI46_00965 0.39 +0.6 216,847 + IAI46_00965 0.49 +0.2 216,848 - IAI46_00965 0.49 -0.0 216,868 + IAI46_00965 0.51 -0.0 216,868 + IAI46_00965 0.51 -0.0 216,869 - IAI46_00965 0.51 -0.9 216,928 + IAI46_00965 0.58 -0.4 216,929 - IAI46_00965 0.58 -0.2 217,054 - IAI46_00965 0.71 -0.2 217,070 + IAI46_00965 0.73 +1.2 217,070 + IAI46_00965 0.73 +0.3 217,071 - IAI46_00965 0.73 -0.3 217,071 - IAI46_00965 0.73 +0.7 217,071 - IAI46_00965 0.73 +0.2 217,089 - IAI46_00965 0.75 +0.3 217,089 - IAI46_00965 0.75 +0.1 217,090 + IAI46_00965 0.75 +0.8
Or see this region's nucleotide sequence