Strain Fitness in Serratia liquefaciens MT49 around IAI46_00380

Experiment: Cobalt chloride 80 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00375 and IAI46_00380 are separated by 322 nucleotidesIAI46_00380 and IAI46_00385 overlap by 4 nucleotidesIAI46_00385 and IAI46_00390 are separated by 91 nucleotides IAI46_00375: IAI46_00375 - TRAP transporter substrate-binding protein, at 84,553 to 85,566 _00375 IAI46_00380: IAI46_00380 - alpha/beta hydrolase, at 85,889 to 87,337 _00380 IAI46_00385: IAI46_00385 - NAD(P)-dependent oxidoreductase, at 87,334 to 88,083 _00385 IAI46_00390: IAI46_00390 - LysR family transcriptional regulator, at 88,175 to 89,038 _00390 Position (kb) 85 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2at 84.896 kb on + strand, within IAI46_00375at 84.896 kb on + strand, within IAI46_00375at 84.897 kb on - strand, within IAI46_00375at 84.919 kb on + strand, within IAI46_00375at 84.954 kb on - strand, within IAI46_00375at 84.984 kb on + strand, within IAI46_00375at 85.085 kb on + strand, within IAI46_00375at 85.086 kb on - strand, within IAI46_00375at 85.086 kb on - strand, within IAI46_00375at 85.086 kb on - strand, within IAI46_00375at 85.086 kb on - strand, within IAI46_00375at 85.116 kb on - strand, within IAI46_00375at 85.131 kb on + strand, within IAI46_00375at 85.355 kb on + strand, within IAI46_00375at 85.355 kb on + strand, within IAI46_00375at 85.356 kb on - strand, within IAI46_00375at 85.356 kb on - strand, within IAI46_00375at 85.419 kb on + strand, within IAI46_00375at 85.420 kb on - strand, within IAI46_00375at 85.420 kb on - strand, within IAI46_00375at 85.503 kb on + strandat 85.517 kb on - strandat 85.517 kb on - strandat 85.662 kb on + strandat 85.662 kb on + strandat 85.663 kb on - strandat 85.663 kb on - strandat 85.674 kb on + strandat 85.674 kb on + strandat 85.675 kb on - strandat 85.798 kb on - strandat 85.843 kb on + strandat 85.843 kb on + strandat 85.850 kb on + strandat 85.850 kb on + strandat 85.851 kb on - strandat 85.851 kb on - strandat 85.906 kb on - strandat 85.909 kb on + strandat 85.910 kb on - strandat 85.910 kb on - strandat 85.910 kb on - strandat 85.932 kb on + strandat 86.014 kb on + strandat 86.014 kb on + strandat 86.053 kb on + strand, within IAI46_00380at 86.053 kb on + strand, within IAI46_00380at 86.072 kb on + strand, within IAI46_00380at 86.073 kb on - strand, within IAI46_00380at 86.073 kb on - strand, within IAI46_00380at 86.113 kb on + strand, within IAI46_00380at 86.113 kb on + strand, within IAI46_00380at 86.289 kb on - strand, within IAI46_00380at 86.290 kb on + strand, within IAI46_00380at 86.290 kb on + strand, within IAI46_00380at 86.290 kb on + strand, within IAI46_00380at 86.290 kb on + strand, within IAI46_00380at 86.291 kb on - strand, within IAI46_00380at 86.291 kb on - strand, within IAI46_00380at 86.291 kb on - strand, within IAI46_00380at 86.315 kb on + strand, within IAI46_00380at 86.316 kb on - strand, within IAI46_00380at 86.330 kb on + strand, within IAI46_00380at 86.330 kb on + strand, within IAI46_00380at 86.330 kb on + strand, within IAI46_00380at 86.331 kb on - strand, within IAI46_00380at 86.331 kb on - strand, within IAI46_00380at 86.331 kb on - strand, within IAI46_00380at 86.331 kb on - strand, within IAI46_00380at 86.331 kb on - strand, within IAI46_00380at 86.340 kb on + strand, within IAI46_00380at 86.344 kb on + strand, within IAI46_00380at 86.344 kb on + strand, within IAI46_00380at 86.345 kb on - strand, within IAI46_00380at 86.365 kb on + strand, within IAI46_00380at 86.443 kb on + strand, within IAI46_00380at 86.443 kb on + strand, within IAI46_00380at 86.473 kb on + strand, within IAI46_00380at 86.473 kb on + strand, within IAI46_00380at 86.473 kb on + strand, within IAI46_00380at 86.473 kb on + strand, within IAI46_00380at 86.474 kb on - strand, within IAI46_00380at 86.474 kb on - strand, within IAI46_00380at 86.476 kb on - strand, within IAI46_00380at 86.476 kb on - strand, within IAI46_00380at 86.476 kb on - strand, within IAI46_00380at 86.476 kb on - strand, within IAI46_00380at 86.476 kb on - strand, within IAI46_00380at 86.476 kb on - strand, within IAI46_00380at 86.513 kb on + strand, within IAI46_00380at 86.513 kb on + strand, within IAI46_00380at 86.697 kb on - strand, within IAI46_00380at 86.733 kb on - strand, within IAI46_00380at 86.733 kb on - strand, within IAI46_00380at 86.868 kb on + strand, within IAI46_00380at 86.869 kb on - strand, within IAI46_00380at 86.869 kb on - strand, within IAI46_00380at 86.869 kb on - strand, within IAI46_00380at 86.869 kb on - strand, within IAI46_00380at 86.869 kb on - strand, within IAI46_00380at 86.870 kb on + strand, within IAI46_00380at 86.870 kb on + strand, within IAI46_00380at 86.870 kb on + strand, within IAI46_00380at 86.871 kb on - strand, within IAI46_00380at 86.871 kb on - strand, within IAI46_00380at 86.873 kb on - strand, within IAI46_00380at 86.873 kb on - strand, within IAI46_00380at 87.090 kb on + strand, within IAI46_00380at 87.091 kb on - strand, within IAI46_00380at 87.111 kb on - strand, within IAI46_00380at 87.125 kb on + strand, within IAI46_00380at 87.125 kb on + strand, within IAI46_00380at 87.125 kb on + strand, within IAI46_00380at 87.126 kb on - strand, within IAI46_00380at 87.126 kb on - strand, within IAI46_00380at 87.126 kb on - strand, within IAI46_00380at 87.126 kb on - strand, within IAI46_00380at 87.126 kb on - strand, within IAI46_00380at 87.173 kb on + strand, within IAI46_00380at 87.220 kb on + strandat 87.305 kb on + strandat 87.335 kb on + strandat 87.335 kb on + strandat 87.375 kb on - strandat 87.418 kb on - strand, within IAI46_00385at 87.418 kb on - strand, within IAI46_00385at 87.420 kb on - strand, within IAI46_00385at 87.420 kb on - strand, within IAI46_00385at 87.420 kb on - strand, within IAI46_00385at 87.525 kb on + strand, within IAI46_00385at 87.556 kb on + strand, within IAI46_00385at 87.617 kb on + strand, within IAI46_00385at 87.618 kb on - strand, within IAI46_00385at 87.783 kb on + strand, within IAI46_00385at 87.784 kb on - strand, within IAI46_00385at 87.802 kb on - strand, within IAI46_00385at 87.865 kb on + strand, within IAI46_00385at 87.865 kb on + strand, within IAI46_00385at 87.866 kb on - strand, within IAI46_00385at 87.993 kb on - strand, within IAI46_00385at 88.109 kb on + strandat 88.110 kb on - strandat 88.123 kb on + strandat 88.123 kb on + strandat 88.126 kb on + strandat 88.126 kb on + strandat 88.127 kb on - strandat 88.263 kb on + strand, within IAI46_00390at 88.264 kb on - strand, within IAI46_00390

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic
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84,896 + IAI46_00375 0.34 -0.9
84,896 + IAI46_00375 0.34 +0.4
84,897 - IAI46_00375 0.34 -1.0
84,919 + IAI46_00375 0.36 +0.8
84,954 - IAI46_00375 0.40 +0.3
84,984 + IAI46_00375 0.43 +0.4
85,085 + IAI46_00375 0.52 -0.2
85,086 - IAI46_00375 0.53 -0.9
85,086 - IAI46_00375 0.53 +0.2
85,086 - IAI46_00375 0.53 +0.4
85,086 - IAI46_00375 0.53 +0.2
85,116 - IAI46_00375 0.56 -0.3
85,131 + IAI46_00375 0.57 +0.1
85,355 + IAI46_00375 0.79 +1.0
85,355 + IAI46_00375 0.79 +0.6
85,356 - IAI46_00375 0.79 +0.1
85,356 - IAI46_00375 0.79 +0.6
85,419 + IAI46_00375 0.85 -0.2
85,420 - IAI46_00375 0.86 -0.1
85,420 - IAI46_00375 0.86 -0.7
85,503 + -0.3
85,517 - +0.3
85,517 - +0.4
85,662 + +0.1
85,662 + +0.0
85,663 - -0.5
85,663 - +0.4
85,674 + +0.1
85,674 + +0.8
85,675 - -0.8
85,798 - -0.5
85,843 + -0.2
85,843 + -0.2
85,850 + +0.0
85,850 + -0.3
85,851 - -0.5
85,851 - +0.1
85,906 - -0.1
85,909 + -0.3
85,910 - -0.1
85,910 - -0.1
85,910 - -0.7
85,932 + +0.1
86,014 + -0.1
86,014 + -1.2
86,053 + IAI46_00380 0.11 -0.2
86,053 + IAI46_00380 0.11 -0.2
86,072 + IAI46_00380 0.13 -0.0
86,073 - IAI46_00380 0.13 -0.3
86,073 - IAI46_00380 0.13 -0.0
86,113 + IAI46_00380 0.15 +2.4
86,113 + IAI46_00380 0.15 +1.8
86,289 - IAI46_00380 0.28 +0.1
86,290 + IAI46_00380 0.28 +0.3
86,290 + IAI46_00380 0.28 +0.6
86,290 + IAI46_00380 0.28 +0.2
86,290 + IAI46_00380 0.28 +0.7
86,291 - IAI46_00380 0.28 +0.3
86,291 - IAI46_00380 0.28 -1.5
86,291 - IAI46_00380 0.28 +0.5
86,315 + IAI46_00380 0.29 +0.7
86,316 - IAI46_00380 0.29 +0.5
86,330 + IAI46_00380 0.30 -0.5
86,330 + IAI46_00380 0.30 +0.5
86,330 + IAI46_00380 0.30 -1.5
86,331 - IAI46_00380 0.31 -0.3
86,331 - IAI46_00380 0.31 +0.0
86,331 - IAI46_00380 0.31 +0.1
86,331 - IAI46_00380 0.31 -0.9
86,331 - IAI46_00380 0.31 +0.3
86,340 + IAI46_00380 0.31 +0.2
86,344 + IAI46_00380 0.31 -0.1
86,344 + IAI46_00380 0.31 +0.2
86,345 - IAI46_00380 0.31 +1.0
86,365 + IAI46_00380 0.33 +0.2
86,443 + IAI46_00380 0.38 -0.8
86,443 + IAI46_00380 0.38 +0.5
86,473 + IAI46_00380 0.40 +0.2
86,473 + IAI46_00380 0.40 -0.5
86,473 + IAI46_00380 0.40 -0.3
86,473 + IAI46_00380 0.40 -0.1
86,474 - IAI46_00380 0.40 +1.1
86,474 - IAI46_00380 0.40 +1.0
86,476 - IAI46_00380 0.41 +0.1
86,476 - IAI46_00380 0.41 +0.4
86,476 - IAI46_00380 0.41 -0.0
86,476 - IAI46_00380 0.41 +0.2
86,476 - IAI46_00380 0.41 +0.8
86,476 - IAI46_00380 0.41 -0.5
86,513 + IAI46_00380 0.43 +0.0
86,513 + IAI46_00380 0.43 +0.3
86,697 - IAI46_00380 0.56 +0.1
86,733 - IAI46_00380 0.58 -0.1
86,733 - IAI46_00380 0.58 +0.6
86,868 + IAI46_00380 0.68 +0.2
86,869 - IAI46_00380 0.68 -1.3
86,869 - IAI46_00380 0.68 -0.9
86,869 - IAI46_00380 0.68 +0.1
86,869 - IAI46_00380 0.68 -0.4
86,869 - IAI46_00380 0.68 -0.4
86,870 + IAI46_00380 0.68 -0.9
86,870 + IAI46_00380 0.68 -0.4
86,870 + IAI46_00380 0.68 +0.0
86,871 - IAI46_00380 0.68 +0.1
86,871 - IAI46_00380 0.68 -0.2
86,873 - IAI46_00380 0.68 +0.1
86,873 - IAI46_00380 0.68 -0.5
87,090 + IAI46_00380 0.83 -0.1
87,091 - IAI46_00380 0.83 +0.9
87,111 - IAI46_00380 0.84 +2.0
87,125 + IAI46_00380 0.85 -0.7
87,125 + IAI46_00380 0.85 -0.2
87,125 + IAI46_00380 0.85 +0.6
87,126 - IAI46_00380 0.85 +0.1
87,126 - IAI46_00380 0.85 -0.1
87,126 - IAI46_00380 0.85 +0.3
87,126 - IAI46_00380 0.85 +0.6
87,126 - IAI46_00380 0.85 -0.5
87,173 + IAI46_00380 0.89 +0.8
87,220 + +0.1
87,305 + -0.2
87,335 + +0.6
87,335 + +0.4
87,375 - -0.5
87,418 - IAI46_00385 0.11 +0.4
87,418 - IAI46_00385 0.11 -2.0
87,420 - IAI46_00385 0.11 +0.7
87,420 - IAI46_00385 0.11 +0.6
87,420 - IAI46_00385 0.11 -0.3
87,525 + IAI46_00385 0.25 -0.4
87,556 + IAI46_00385 0.30 -0.6
87,617 + IAI46_00385 0.38 +1.5
87,618 - IAI46_00385 0.38 -0.4
87,783 + IAI46_00385 0.60 +0.6
87,784 - IAI46_00385 0.60 -0.2
87,802 - IAI46_00385 0.62 +1.2
87,865 + IAI46_00385 0.71 +0.8
87,865 + IAI46_00385 0.71 -0.5
87,866 - IAI46_00385 0.71 +0.1
87,993 - IAI46_00385 0.88 -0.3
88,109 + +0.8
88,110 - -0.1
88,123 + +0.3
88,123 + +0.6
88,126 + +0.2
88,126 + -1.2
88,127 - +0.9
88,263 + IAI46_00390 0.10 -0.1
88,264 - IAI46_00390 0.10 -0.7

Or see this region's nucleotide sequence