Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00185 and IAI46_00190 are separated by 113 nucleotides IAI46_00190 and IAI46_00195 are separated by 91 nucleotides IAI46_00195 and IAI46_00200 are separated by 124 nucleotides IAI46_00200 and IAI46_00205 are separated by 110 nucleotides
IAI46_00185: IAI46_00185 - class I SAM-dependent methyltransferase, at 41,673 to 42,452
_00185
IAI46_00190: IAI46_00190 - 6-N-hydroxylaminopurine resistance protein, at 42,566 to 43,237
_00190
IAI46_00195: IAI46_00195 - methyl-accepting chemotaxis protein, at 43,329 to 45,257
_00195
IAI46_00200: IAI46_00200 - superoxide dismutase [Mn], at 45,382 to 46,002
_00200
IAI46_00205: IAI46_00205 - formate dehydrogenase accessory sulfurtransferase FdhD, at 46,113 to 46,958
_00205
Position (kb) 43
44
45
46 Strain fitness (log2 ratio) -1
0
1
2 at 42.364 kb on + strand, within IAI46_00185 at 42.385 kb on + strand at 42.385 kb on + strand at 42.386 kb on - strand at 42.452 kb on + strand at 42.452 kb on + strand at 42.452 kb on + strand at 42.453 kb on - strand at 42.453 kb on - strand at 42.453 kb on - strand at 42.500 kb on + strand at 42.500 kb on + strand at 42.501 kb on - strand at 42.501 kb on - strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.502 kb on + strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.503 kb on - strand at 42.528 kb on + strand at 42.589 kb on + strand at 42.590 kb on - strand at 42.602 kb on - strand at 42.616 kb on + strand at 42.616 kb on + strand at 42.634 kb on + strand, within IAI46_00190 at 42.634 kb on + strand, within IAI46_00190 at 42.700 kb on + strand, within IAI46_00190 at 42.701 kb on - strand, within IAI46_00190 at 42.701 kb on - strand, within IAI46_00190 at 42.737 kb on - strand, within IAI46_00190 at 42.752 kb on + strand, within IAI46_00190 at 42.805 kb on - strand, within IAI46_00190 at 42.867 kb on + strand, within IAI46_00190 at 42.868 kb on - strand, within IAI46_00190 at 42.980 kb on - strand, within IAI46_00190 at 43.047 kb on + strand, within IAI46_00190 at 43.048 kb on - strand, within IAI46_00190 at 43.048 kb on - strand, within IAI46_00190 at 43.197 kb on + strand at 43.197 kb on + strand at 43.197 kb on + strand at 43.198 kb on - strand at 43.198 kb on - strand at 43.198 kb on - strand at 43.211 kb on - strand at 43.216 kb on + strand at 43.217 kb on - strand at 43.217 kb on - strand at 43.218 kb on + strand at 43.218 kb on + strand at 43.218 kb on + strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.219 kb on - strand at 43.238 kb on - strand at 43.272 kb on + strand at 43.273 kb on - strand at 43.273 kb on - strand at 43.331 kb on - strand at 43.346 kb on + strand at 43.346 kb on + strand at 43.346 kb on + strand at 43.347 kb on - strand at 43.347 kb on - strand at 43.347 kb on - strand at 43.347 kb on - strand at 43.464 kb on + strand at 43.667 kb on + strand, within IAI46_00195 at 43.667 kb on + strand, within IAI46_00195 at 43.668 kb on - strand, within IAI46_00195 at 43.668 kb on - strand, within IAI46_00195 at 43.761 kb on - strand, within IAI46_00195 at 43.779 kb on + strand, within IAI46_00195 at 43.779 kb on + strand, within IAI46_00195 at 43.780 kb on - strand, within IAI46_00195 at 43.862 kb on + strand, within IAI46_00195 at 43.863 kb on - strand, within IAI46_00195 at 43.863 kb on - strand, within IAI46_00195 at 44.315 kb on + strand, within IAI46_00195 at 44.316 kb on - strand, within IAI46_00195 at 44.316 kb on - strand, within IAI46_00195 at 44.316 kb on - strand, within IAI46_00195 at 44.316 kb on - strand, within IAI46_00195 at 44.425 kb on - strand, within IAI46_00195 at 44.456 kb on + strand, within IAI46_00195 at 44.457 kb on - strand, within IAI46_00195 at 44.457 kb on - strand, within IAI46_00195 at 44.542 kb on + strand, within IAI46_00195 at 44.542 kb on + strand, within IAI46_00195 at 44.543 kb on - strand, within IAI46_00195 at 44.543 kb on - strand, within IAI46_00195 at 44.552 kb on + strand, within IAI46_00195 at 44.563 kb on + strand, within IAI46_00195 at 44.563 kb on + strand, within IAI46_00195 at 44.564 kb on - strand, within IAI46_00195 at 44.564 kb on - strand, within IAI46_00195 at 44.658 kb on + strand, within IAI46_00195 at 44.783 kb on + strand, within IAI46_00195 at 44.783 kb on + strand, within IAI46_00195 at 44.783 kb on + strand, within IAI46_00195 at 44.783 kb on + strand, within IAI46_00195 at 44.796 kb on + strand, within IAI46_00195 at 44.797 kb on - strand, within IAI46_00195 at 44.897 kb on - strand, within IAI46_00195 at 45.019 kb on + strand, within IAI46_00195 at 45.029 kb on + strand, within IAI46_00195 at 45.029 kb on + strand, within IAI46_00195 at 45.030 kb on - strand, within IAI46_00195 at 45.030 kb on - strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.031 kb on + strand, within IAI46_00195 at 45.032 kb on - strand, within IAI46_00195 at 45.032 kb on - strand, within IAI46_00195 at 45.058 kb on + strand, within IAI46_00195 at 45.058 kb on + strand, within IAI46_00195 at 45.058 kb on + strand, within IAI46_00195 at 45.058 kb on + strand, within IAI46_00195 at 45.128 kb on + strand at 45.128 kb on + strand at 45.129 kb on - strand at 45.129 kb on - strand at 45.129 kb on - strand at 45.129 kb on - strand at 45.136 kb on + strand at 45.136 kb on + strand at 45.136 kb on + strand at 45.137 kb on - strand at 45.137 kb on - strand at 45.137 kb on - strand at 45.137 kb on - strand at 45.172 kb on - strand at 45.315 kb on - strand at 45.370 kb on - strand at 45.383 kb on + strand at 45.574 kb on - strand, within IAI46_00200 at 45.574 kb on - strand, within IAI46_00200 at 46.003 kb on - strand at 46.024 kb on - strand at 46.024 kb on - strand at 46.024 kb on - strand at 46.053 kb on + strand at 46.054 kb on - strand at 46.070 kb on - strand at 46.070 kb on - strand at 46.070 kb on - strand at 46.070 kb on - strand at 46.071 kb on + strand at 46.071 kb on + strand at 46.072 kb on - strand at 46.072 kb on - strand at 46.072 kb on - strand at 46.072 kb on - strand at 46.072 kb on - strand at 46.114 kb on + strand at 46.127 kb on + strand at 46.127 kb on + strand at 46.127 kb on + strand at 46.128 kb on - strand at 46.157 kb on + strand at 46.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 42,364 + IAI46_00185 0.89 -0.2 42,385 + +0.6 42,385 + -0.7 42,386 - -0.2 42,452 + -0.4 42,452 + -0.3 42,452 + -0.3 42,453 - +1.6 42,453 - +0.1 42,453 - +0.0 42,500 + +0.2 42,500 + -0.4 42,501 - -0.3 42,501 - -0.1 42,502 + -0.4 42,502 + -0.4 42,502 + +0.4 42,502 + +0.3 42,502 + +1.2 42,502 + -0.6 42,502 + +0.1 42,502 + +1.1 42,502 + +0.9 42,503 - -0.6 42,503 - +0.1 42,503 - -0.8 42,503 - -0.7 42,503 - +0.3 42,503 - +0.3 42,528 + +0.2 42,589 + -0.8 42,590 - -0.5 42,602 - +0.5 42,616 + -0.2 42,616 + +0.1 42,634 + IAI46_00190 0.10 +0.7 42,634 + IAI46_00190 0.10 +0.8 42,700 + IAI46_00190 0.20 +0.7 42,701 - IAI46_00190 0.20 +1.0 42,701 - IAI46_00190 0.20 -0.2 42,737 - IAI46_00190 0.25 +0.1 42,752 + IAI46_00190 0.28 -1.2 42,805 - IAI46_00190 0.36 -0.1 42,867 + IAI46_00190 0.45 +0.1 42,868 - IAI46_00190 0.45 +0.4 42,980 - IAI46_00190 0.62 +0.3 43,047 + IAI46_00190 0.72 -0.3 43,048 - IAI46_00190 0.72 +0.1 43,048 - IAI46_00190 0.72 +0.4 43,197 + +0.3 43,197 + +0.2 43,197 + -1.0 43,198 - +0.1 43,198 - +1.8 43,198 - -0.5 43,211 - +0.6 43,216 + -1.1 43,217 - +0.6 43,217 - +0.1 43,218 + +0.3 43,218 + -0.6 43,218 + +0.2 43,219 - +0.2 43,219 - -0.4 43,219 - +0.0 43,238 - -0.8 43,272 + -0.7 43,273 - +0.5 43,273 - +0.0 43,331 - +0.2 43,346 + -0.8 43,346 + -0.3 43,346 + -0.5 43,347 - +0.0 43,347 - +0.2 43,347 - -0.1 43,347 - +0.9 43,464 + +0.7 43,667 + IAI46_00195 0.18 -0.2 43,667 + IAI46_00195 0.18 -0.7 43,668 - IAI46_00195 0.18 -0.2 43,668 - IAI46_00195 0.18 -0.4 43,761 - IAI46_00195 0.22 -1.4 43,779 + IAI46_00195 0.23 +0.3 43,779 + IAI46_00195 0.23 -0.2 43,780 - IAI46_00195 0.23 +0.7 43,862 + IAI46_00195 0.28 -0.1 43,863 - IAI46_00195 0.28 -0.7 43,863 - IAI46_00195 0.28 +0.4 44,315 + IAI46_00195 0.51 -1.4 44,316 - IAI46_00195 0.51 +0.0 44,316 - IAI46_00195 0.51 -0.3 44,316 - IAI46_00195 0.51 +0.0 44,316 - IAI46_00195 0.51 +0.4 44,425 - IAI46_00195 0.57 -0.9 44,456 + IAI46_00195 0.58 +0.4 44,457 - IAI46_00195 0.58 +0.8 44,457 - IAI46_00195 0.58 +0.2 44,542 + IAI46_00195 0.63 +0.5 44,542 + IAI46_00195 0.63 +0.8 44,543 - IAI46_00195 0.63 -0.3 44,543 - IAI46_00195 0.63 +0.3 44,552 + IAI46_00195 0.63 +0.4 44,563 + IAI46_00195 0.64 -0.1 44,563 + IAI46_00195 0.64 -0.3 44,564 - IAI46_00195 0.64 -0.2 44,564 - IAI46_00195 0.64 +0.0 44,658 + IAI46_00195 0.69 -0.2 44,783 + IAI46_00195 0.75 -0.1 44,783 + IAI46_00195 0.75 -0.1 44,783 + IAI46_00195 0.75 +0.1 44,783 + IAI46_00195 0.75 -0.3 44,796 + IAI46_00195 0.76 -0.0 44,797 - IAI46_00195 0.76 -0.2 44,897 - IAI46_00195 0.81 +0.3 45,019 + IAI46_00195 0.88 -0.5 45,029 + IAI46_00195 0.88 +0.5 45,029 + IAI46_00195 0.88 +0.3 45,030 - IAI46_00195 0.88 -0.3 45,030 - IAI46_00195 0.88 -0.7 45,031 + IAI46_00195 0.88 -0.2 45,031 + IAI46_00195 0.88 -0.2 45,031 + IAI46_00195 0.88 +0.4 45,031 + IAI46_00195 0.88 -0.1 45,031 + IAI46_00195 0.88 -0.1 45,031 + IAI46_00195 0.88 +0.0 45,031 + IAI46_00195 0.88 -0.8 45,032 - IAI46_00195 0.88 -0.1 45,032 - IAI46_00195 0.88 +0.1 45,058 + IAI46_00195 0.90 +0.1 45,058 + IAI46_00195 0.90 +1.0 45,058 + IAI46_00195 0.90 +0.0 45,058 + IAI46_00195 0.90 -0.6 45,128 + -0.7 45,128 + -0.2 45,129 - -0.7 45,129 - -0.1 45,129 - -0.6 45,129 - -0.5 45,136 + +0.4 45,136 + +0.5 45,136 + +0.6 45,137 - +0.8 45,137 - +0.9 45,137 - +0.4 45,137 - +0.3 45,172 - +1.0 45,315 - -0.0 45,370 - +0.1 45,383 + +0.3 45,574 - IAI46_00200 0.31 +0.7 45,574 - IAI46_00200 0.31 -0.8 46,003 - -1.1 46,024 - -0.3 46,024 - -0.4 46,024 - -0.5 46,053 + -0.2 46,054 - -0.5 46,070 - -0.4 46,070 - -0.7 46,070 - -0.1 46,070 - -1.1 46,071 + -0.8 46,071 + +0.5 46,072 - -1.3 46,072 - -0.2 46,072 - +0.2 46,072 - -1.0 46,072 - -0.7 46,114 + -0.7 46,127 + +0.1 46,127 + +0.2 46,127 + -0.3 46,128 - +0.1 46,157 + +0.6 46,158 - +0.9
Or see this region's nucleotide sequence