Experiment: m.b. Thallium(I) acetate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4230 and Echvi_4231 are separated by 4 nucleotides Echvi_4231 and Echvi_4232 are separated by 94 nucleotides
Echvi_4230: Echvi_4230 - Membrane protein involved in the export of O-antigen and teichoic acid, at 5,072,992 to 5,074,518
_4230
Echvi_4231: Echvi_4231 - Glycosyltransferases involved in cell wall biogenesis, at 5,074,523 to 5,075,488
_4231
Echvi_4232: Echvi_4232 - Glycosyltransferase, at 5,075,583 to 5,076,641
_4232
Position (kb)
5074
5075
5076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5073.554 kb on - strand, within Echvi_4230 at 5073.554 kb on - strand, within Echvi_4230 at 5073.566 kb on - strand, within Echvi_4230 at 5073.566 kb on - strand, within Echvi_4230 at 5073.579 kb on - strand, within Echvi_4230 at 5073.690 kb on + strand, within Echvi_4230 at 5073.690 kb on + strand, within Echvi_4230 at 5073.690 kb on + strand, within Echvi_4230 at 5073.691 kb on - strand, within Echvi_4230 at 5073.691 kb on - strand, within Echvi_4230 at 5073.691 kb on - strand, within Echvi_4230 at 5073.934 kb on + strand, within Echvi_4230 at 5073.936 kb on + strand, within Echvi_4230 at 5073.943 kb on - strand, within Echvi_4230 at 5073.956 kb on + strand, within Echvi_4230 at 5073.957 kb on - strand, within Echvi_4230 at 5073.957 kb on - strand, within Echvi_4230 at 5074.003 kb on + strand at 5074.004 kb on - strand, within Echvi_4230 at 5074.004 kb on - strand, within Echvi_4230 at 5074.004 kb on - strand, within Echvi_4230 at 5074.004 kb on - strand, within Echvi_4230 at 5074.005 kb on + strand, within Echvi_4230 at 5074.219 kb on + strand, within Echvi_4230 at 5074.261 kb on + strand, within Echvi_4230 at 5074.262 kb on - strand, within Echvi_4230 at 5074.262 kb on - strand, within Echvi_4230 at 5074.264 kb on + strand, within Echvi_4230 at 5074.264 kb on + strand, within Echvi_4230 at 5074.267 kb on - strand, within Echvi_4230 at 5074.360 kb on + strand, within Echvi_4230 at 5074.396 kb on + strand at 5074.396 kb on + strand at 5074.396 kb on + strand at 5074.397 kb on - strand at 5074.424 kb on + strand at 5074.554 kb on + strand at 5074.555 kb on - strand at 5074.555 kb on - strand at 5074.558 kb on + strand at 5074.558 kb on + strand at 5074.558 kb on + strand at 5074.559 kb on - strand at 5074.559 kb on - strand at 5074.568 kb on + strand at 5074.568 kb on + strand at 5074.568 kb on + strand at 5074.569 kb on - strand at 5074.569 kb on - strand at 5074.570 kb on + strand at 5074.571 kb on - strand at 5074.621 kb on - strand, within Echvi_4231 at 5074.704 kb on + strand, within Echvi_4231 at 5074.709 kb on + strand, within Echvi_4231 at 5074.709 kb on + strand, within Echvi_4231 at 5074.710 kb on - strand, within Echvi_4231 at 5074.710 kb on - strand, within Echvi_4231 at 5074.710 kb on - strand, within Echvi_4231 at 5074.710 kb on - strand, within Echvi_4231 at 5074.921 kb on + strand, within Echvi_4231 at 5074.921 kb on + strand, within Echvi_4231 at 5074.922 kb on - strand, within Echvi_4231 at 5075.006 kb on + strand, within Echvi_4231 at 5075.008 kb on + strand, within Echvi_4231 at 5075.009 kb on - strand, within Echvi_4231 at 5075.009 kb on - strand, within Echvi_4231 at 5075.019 kb on - strand, within Echvi_4231 at 5075.291 kb on + strand, within Echvi_4231 at 5075.321 kb on + strand, within Echvi_4231 at 5075.344 kb on + strand at 5075.345 kb on - strand, within Echvi_4231 at 5075.345 kb on - strand, within Echvi_4231 at 5075.434 kb on + strand at 5075.435 kb on - strand at 5075.500 kb on + strand at 5075.529 kb on + strand at 5075.529 kb on + strand at 5075.530 kb on - strand at 5075.551 kb on - strand at 5075.580 kb on + strand at 5075.591 kb on + strand at 5075.626 kb on - strand at 5075.626 kb on - strand at 5076.006 kb on + strand, within Echvi_4232 at 5076.006 kb on + strand, within Echvi_4232 at 5076.006 kb on + strand, within Echvi_4232 at 5076.008 kb on + strand, within Echvi_4232 at 5076.009 kb on - strand, within Echvi_4232 at 5076.149 kb on + strand, within Echvi_4232 at 5076.201 kb on - strand, within Echvi_4232 at 5076.311 kb on - strand, within Echvi_4232 at 5076.318 kb on + strand, within Echvi_4232
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml remove 5,073,554 - Echvi_4230 0.37 +0.9 5,073,554 - Echvi_4230 0.37 -1.4 5,073,566 - Echvi_4230 0.38 +0.0 5,073,566 - Echvi_4230 0.38 -0.1 5,073,579 - Echvi_4230 0.38 -0.8 5,073,690 + Echvi_4230 0.46 -0.1 5,073,690 + Echvi_4230 0.46 -0.3 5,073,690 + Echvi_4230 0.46 -1.3 5,073,691 - Echvi_4230 0.46 -1.0 5,073,691 - Echvi_4230 0.46 -0.7 5,073,691 - Echvi_4230 0.46 -2.3 5,073,934 + Echvi_4230 0.62 -0.8 5,073,936 + Echvi_4230 0.62 -1.3 5,073,943 - Echvi_4230 0.62 +0.0 5,073,956 + Echvi_4230 0.63 +0.4 5,073,957 - Echvi_4230 0.63 -0.2 5,073,957 - Echvi_4230 0.63 +0.8 5,074,003 + +1.4 5,074,004 - Echvi_4230 0.66 -0.8 5,074,004 - Echvi_4230 0.66 -0.5 5,074,004 - Echvi_4230 0.66 -1.6 5,074,004 - Echvi_4230 0.66 +1.8 5,074,005 + Echvi_4230 0.66 -0.4 5,074,219 + Echvi_4230 0.80 -1.0 5,074,261 + Echvi_4230 0.83 -1.8 5,074,262 - Echvi_4230 0.83 +0.1 5,074,262 - Echvi_4230 0.83 -1.1 5,074,264 + Echvi_4230 0.83 +1.6 5,074,264 + Echvi_4230 0.83 +1.2 5,074,267 - Echvi_4230 0.83 -0.8 5,074,360 + Echvi_4230 0.90 -2.3 5,074,396 + -0.9 5,074,396 + -0.1 5,074,396 + +0.0 5,074,397 - -0.7 5,074,424 + +0.3 5,074,554 + -2.6 5,074,555 - -0.3 5,074,555 - -0.1 5,074,558 + -0.2 5,074,558 + +0.8 5,074,558 + -0.1 5,074,559 - -1.7 5,074,559 - +0.1 5,074,568 + +0.4 5,074,568 + -0.3 5,074,568 + +0.4 5,074,569 - +1.2 5,074,569 - +1.9 5,074,570 + -0.2 5,074,571 - -0.8 5,074,621 - Echvi_4231 0.10 -1.4 5,074,704 + Echvi_4231 0.19 -1.9 5,074,709 + Echvi_4231 0.19 -0.4 5,074,709 + Echvi_4231 0.19 +0.2 5,074,710 - Echvi_4231 0.19 +0.2 5,074,710 - Echvi_4231 0.19 +0.5 5,074,710 - Echvi_4231 0.19 +1.4 5,074,710 - Echvi_4231 0.19 +1.4 5,074,921 + Echvi_4231 0.41 +0.2 5,074,921 + Echvi_4231 0.41 +0.2 5,074,922 - Echvi_4231 0.41 +0.8 5,075,006 + Echvi_4231 0.50 -0.4 5,075,008 + Echvi_4231 0.50 -0.4 5,075,009 - Echvi_4231 0.50 -2.8 5,075,009 - Echvi_4231 0.50 -0.5 5,075,019 - Echvi_4231 0.51 +0.8 5,075,291 + Echvi_4231 0.80 +1.7 5,075,321 + Echvi_4231 0.83 +0.4 5,075,344 + +1.1 5,075,345 - Echvi_4231 0.85 +1.0 5,075,345 - Echvi_4231 0.85 -0.9 5,075,434 + -0.1 5,075,435 - -3.4 5,075,500 + +1.7 5,075,529 + -0.8 5,075,529 + +0.4 5,075,530 - +0.3 5,075,551 - +0.1 5,075,580 + +0.6 5,075,591 + -0.9 5,075,626 - -0.3 5,075,626 - -0.2 5,076,006 + Echvi_4232 0.40 -0.6 5,076,006 + Echvi_4232 0.40 +0.1 5,076,006 + Echvi_4232 0.40 +0.5 5,076,008 + Echvi_4232 0.40 -0.4 5,076,009 - Echvi_4232 0.40 -1.6 5,076,149 + Echvi_4232 0.53 -0.2 5,076,201 - Echvi_4232 0.58 +0.2 5,076,311 - Echvi_4232 0.69 -0.7 5,076,318 + Echvi_4232 0.69 +0.5
Or see this region's nucleotide sequence