Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4231

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4230 and Echvi_4231 are separated by 4 nucleotidesEchvi_4231 and Echvi_4232 are separated by 94 nucleotides Echvi_4230: Echvi_4230 - Membrane protein involved in the export of O-antigen and teichoic acid, at 5,072,992 to 5,074,518 _4230 Echvi_4231: Echvi_4231 - Glycosyltransferases involved in cell wall biogenesis, at 5,074,523 to 5,075,488 _4231 Echvi_4232: Echvi_4232 - Glycosyltransferase, at 5,075,583 to 5,076,641 _4232 Position (kb) 5074 5075 5076Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5073.554 kb on - strand, within Echvi_4230at 5073.554 kb on - strand, within Echvi_4230at 5073.566 kb on - strand, within Echvi_4230at 5073.566 kb on - strand, within Echvi_4230at 5073.579 kb on - strand, within Echvi_4230at 5073.690 kb on + strand, within Echvi_4230at 5073.690 kb on + strand, within Echvi_4230at 5073.690 kb on + strand, within Echvi_4230at 5073.691 kb on - strand, within Echvi_4230at 5073.691 kb on - strand, within Echvi_4230at 5073.691 kb on - strand, within Echvi_4230at 5073.934 kb on + strand, within Echvi_4230at 5073.936 kb on + strand, within Echvi_4230at 5073.943 kb on - strand, within Echvi_4230at 5073.956 kb on + strand, within Echvi_4230at 5073.957 kb on - strand, within Echvi_4230at 5073.957 kb on - strand, within Echvi_4230at 5074.003 kb on + strandat 5074.004 kb on - strand, within Echvi_4230at 5074.004 kb on - strand, within Echvi_4230at 5074.004 kb on - strand, within Echvi_4230at 5074.004 kb on - strand, within Echvi_4230at 5074.005 kb on + strand, within Echvi_4230at 5074.219 kb on + strand, within Echvi_4230at 5074.261 kb on + strand, within Echvi_4230at 5074.262 kb on - strand, within Echvi_4230at 5074.262 kb on - strand, within Echvi_4230at 5074.264 kb on + strand, within Echvi_4230at 5074.264 kb on + strand, within Echvi_4230at 5074.267 kb on - strand, within Echvi_4230at 5074.360 kb on + strand, within Echvi_4230at 5074.396 kb on + strandat 5074.396 kb on + strandat 5074.396 kb on + strandat 5074.397 kb on - strandat 5074.424 kb on + strandat 5074.554 kb on + strandat 5074.555 kb on - strandat 5074.555 kb on - strandat 5074.558 kb on + strandat 5074.558 kb on + strandat 5074.558 kb on + strandat 5074.559 kb on - strandat 5074.559 kb on - strandat 5074.568 kb on + strandat 5074.568 kb on + strandat 5074.568 kb on + strandat 5074.569 kb on - strandat 5074.569 kb on - strandat 5074.570 kb on + strandat 5074.571 kb on - strandat 5074.621 kb on - strand, within Echvi_4231at 5074.704 kb on + strand, within Echvi_4231at 5074.709 kb on + strand, within Echvi_4231at 5074.709 kb on + strand, within Echvi_4231at 5074.710 kb on - strand, within Echvi_4231at 5074.710 kb on - strand, within Echvi_4231at 5074.710 kb on - strand, within Echvi_4231at 5074.710 kb on - strand, within Echvi_4231at 5074.921 kb on + strand, within Echvi_4231at 5074.921 kb on + strand, within Echvi_4231at 5074.922 kb on - strand, within Echvi_4231at 5075.006 kb on + strand, within Echvi_4231at 5075.008 kb on + strand, within Echvi_4231at 5075.009 kb on - strand, within Echvi_4231at 5075.009 kb on - strand, within Echvi_4231at 5075.019 kb on - strand, within Echvi_4231at 5075.291 kb on + strand, within Echvi_4231at 5075.321 kb on + strand, within Echvi_4231at 5075.344 kb on + strandat 5075.345 kb on - strand, within Echvi_4231at 5075.345 kb on - strand, within Echvi_4231at 5075.434 kb on + strandat 5075.435 kb on - strandat 5075.500 kb on + strandat 5075.529 kb on + strandat 5075.529 kb on + strandat 5075.530 kb on - strandat 5075.551 kb on - strandat 5075.580 kb on + strandat 5075.591 kb on + strandat 5075.626 kb on - strandat 5075.626 kb on - strandat 5076.006 kb on + strand, within Echvi_4232at 5076.006 kb on + strand, within Echvi_4232at 5076.006 kb on + strand, within Echvi_4232at 5076.008 kb on + strand, within Echvi_4232at 5076.009 kb on - strand, within Echvi_4232at 5076.149 kb on + strand, within Echvi_4232at 5076.201 kb on - strand, within Echvi_4232at 5076.311 kb on - strand, within Echvi_4232at 5076.318 kb on + strand, within Echvi_4232

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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5,073,554 - Echvi_4230 0.37 +0.9
5,073,554 - Echvi_4230 0.37 -1.4
5,073,566 - Echvi_4230 0.38 +0.0
5,073,566 - Echvi_4230 0.38 -0.1
5,073,579 - Echvi_4230 0.38 -0.8
5,073,690 + Echvi_4230 0.46 -0.1
5,073,690 + Echvi_4230 0.46 -0.3
5,073,690 + Echvi_4230 0.46 -1.3
5,073,691 - Echvi_4230 0.46 -1.0
5,073,691 - Echvi_4230 0.46 -0.7
5,073,691 - Echvi_4230 0.46 -2.3
5,073,934 + Echvi_4230 0.62 -0.8
5,073,936 + Echvi_4230 0.62 -1.3
5,073,943 - Echvi_4230 0.62 +0.0
5,073,956 + Echvi_4230 0.63 +0.4
5,073,957 - Echvi_4230 0.63 -0.2
5,073,957 - Echvi_4230 0.63 +0.8
5,074,003 + +1.4
5,074,004 - Echvi_4230 0.66 -0.8
5,074,004 - Echvi_4230 0.66 -0.5
5,074,004 - Echvi_4230 0.66 -1.6
5,074,004 - Echvi_4230 0.66 +1.8
5,074,005 + Echvi_4230 0.66 -0.4
5,074,219 + Echvi_4230 0.80 -1.0
5,074,261 + Echvi_4230 0.83 -1.8
5,074,262 - Echvi_4230 0.83 +0.1
5,074,262 - Echvi_4230 0.83 -1.1
5,074,264 + Echvi_4230 0.83 +1.6
5,074,264 + Echvi_4230 0.83 +1.2
5,074,267 - Echvi_4230 0.83 -0.8
5,074,360 + Echvi_4230 0.90 -2.3
5,074,396 + -0.9
5,074,396 + -0.1
5,074,396 + +0.0
5,074,397 - -0.7
5,074,424 + +0.3
5,074,554 + -2.6
5,074,555 - -0.3
5,074,555 - -0.1
5,074,558 + -0.2
5,074,558 + +0.8
5,074,558 + -0.1
5,074,559 - -1.7
5,074,559 - +0.1
5,074,568 + +0.4
5,074,568 + -0.3
5,074,568 + +0.4
5,074,569 - +1.2
5,074,569 - +1.9
5,074,570 + -0.2
5,074,571 - -0.8
5,074,621 - Echvi_4231 0.10 -1.4
5,074,704 + Echvi_4231 0.19 -1.9
5,074,709 + Echvi_4231 0.19 -0.4
5,074,709 + Echvi_4231 0.19 +0.2
5,074,710 - Echvi_4231 0.19 +0.2
5,074,710 - Echvi_4231 0.19 +0.5
5,074,710 - Echvi_4231 0.19 +1.4
5,074,710 - Echvi_4231 0.19 +1.4
5,074,921 + Echvi_4231 0.41 +0.2
5,074,921 + Echvi_4231 0.41 +0.2
5,074,922 - Echvi_4231 0.41 +0.8
5,075,006 + Echvi_4231 0.50 -0.4
5,075,008 + Echvi_4231 0.50 -0.4
5,075,009 - Echvi_4231 0.50 -2.8
5,075,009 - Echvi_4231 0.50 -0.5
5,075,019 - Echvi_4231 0.51 +0.8
5,075,291 + Echvi_4231 0.80 +1.7
5,075,321 + Echvi_4231 0.83 +0.4
5,075,344 + +1.1
5,075,345 - Echvi_4231 0.85 +1.0
5,075,345 - Echvi_4231 0.85 -0.9
5,075,434 + -0.1
5,075,435 - -3.4
5,075,500 + +1.7
5,075,529 + -0.8
5,075,529 + +0.4
5,075,530 - +0.3
5,075,551 - +0.1
5,075,580 + +0.6
5,075,591 + -0.9
5,075,626 - -0.3
5,075,626 - -0.2
5,076,006 + Echvi_4232 0.40 -0.6
5,076,006 + Echvi_4232 0.40 +0.1
5,076,006 + Echvi_4232 0.40 +0.5
5,076,008 + Echvi_4232 0.40 -0.4
5,076,009 - Echvi_4232 0.40 -1.6
5,076,149 + Echvi_4232 0.53 -0.2
5,076,201 - Echvi_4232 0.58 +0.2
5,076,311 - Echvi_4232 0.69 -0.7
5,076,318 + Echvi_4232 0.69 +0.5

Or see this region's nucleotide sequence