Experiment: m.b. Thallium(I) acetate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1425 and Echvi_1426 are separated by 49 nucleotides Echvi_1426 and Echvi_1427 are separated by 17 nucleotides
Echvi_1425: Echvi_1425 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 1,636,620 to 1,637,615
_1425
Echvi_1426: Echvi_1426 - S1/P1 Nuclease., at 1,637,665 to 1,638,435
_1426
Echvi_1427: Echvi_1427 - putative N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) (from data) , at 1,638,453 to 1,639,646
_1427
Position (kb)
1637
1638
1639 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1636.673 kb on - strand at 1636.673 kb on - strand at 1636.673 kb on - strand at 1636.747 kb on + strand, within Echvi_1425 at 1636.748 kb on - strand, within Echvi_1425 at 1636.757 kb on - strand, within Echvi_1425 at 1636.833 kb on - strand, within Echvi_1425 at 1636.917 kb on - strand, within Echvi_1425 at 1636.928 kb on + strand, within Echvi_1425 at 1636.929 kb on - strand, within Echvi_1425 at 1637.103 kb on + strand, within Echvi_1425 at 1637.103 kb on + strand, within Echvi_1425 at 1637.104 kb on - strand, within Echvi_1425 at 1637.146 kb on - strand, within Echvi_1425 at 1637.202 kb on - strand, within Echvi_1425 at 1637.210 kb on + strand, within Echvi_1425 at 1637.278 kb on + strand, within Echvi_1425 at 1637.298 kb on - strand, within Echvi_1425 at 1637.298 kb on - strand, within Echvi_1425 at 1637.319 kb on - strand, within Echvi_1425 at 1637.363 kb on + strand, within Echvi_1425 at 1637.402 kb on + strand, within Echvi_1425 at 1637.402 kb on + strand, within Echvi_1425 at 1637.403 kb on - strand, within Echvi_1425 at 1637.417 kb on + strand, within Echvi_1425 at 1637.417 kb on + strand, within Echvi_1425 at 1637.417 kb on + strand, within Echvi_1425 at 1637.418 kb on - strand, within Echvi_1425 at 1637.418 kb on - strand, within Echvi_1425 at 1637.418 kb on - strand, within Echvi_1425 at 1637.418 kb on - strand, within Echvi_1425 at 1637.418 kb on - strand, within Echvi_1425 at 1637.485 kb on + strand, within Echvi_1425 at 1637.485 kb on + strand at 1637.485 kb on + strand, within Echvi_1425 at 1637.490 kb on + strand, within Echvi_1425 at 1637.491 kb on - strand, within Echvi_1425 at 1637.491 kb on - strand, within Echvi_1425 at 1637.503 kb on - strand, within Echvi_1425 at 1637.504 kb on + strand, within Echvi_1425 at 1637.505 kb on - strand, within Echvi_1425 at 1637.560 kb on + strand at 1637.561 kb on - strand at 1637.577 kb on + strand at 1637.577 kb on + strand at 1637.578 kb on - strand at 1637.578 kb on - strand at 1637.578 kb on - strand at 1637.578 kb on - strand at 1637.578 kb on - strand at 1637.578 kb on - strand at 1637.608 kb on + strand at 1637.632 kb on + strand at 1637.655 kb on + strand at 1637.656 kb on - strand at 1637.656 kb on - strand at 1637.747 kb on + strand, within Echvi_1426 at 1637.748 kb on - strand, within Echvi_1426 at 1637.748 kb on - strand, within Echvi_1426 at 1637.760 kb on - strand, within Echvi_1426 at 1637.835 kb on - strand, within Echvi_1426 at 1637.975 kb on + strand, within Echvi_1426 at 1637.975 kb on + strand, within Echvi_1426 at 1637.976 kb on - strand, within Echvi_1426 at 1638.051 kb on + strand, within Echvi_1426 at 1638.127 kb on + strand, within Echvi_1426 at 1638.140 kb on + strand, within Echvi_1426 at 1638.213 kb on + strand, within Echvi_1426 at 1638.215 kb on + strand, within Echvi_1426 at 1638.215 kb on + strand, within Echvi_1426 at 1638.215 kb on + strand, within Echvi_1426 at 1638.216 kb on - strand, within Echvi_1426 at 1638.216 kb on - strand, within Echvi_1426 at 1638.216 kb on - strand, within Echvi_1426 at 1638.216 kb on - strand, within Echvi_1426 at 1638.216 kb on - strand, within Echvi_1426 at 1638.221 kb on + strand, within Echvi_1426 at 1638.227 kb on + strand, within Echvi_1426 at 1638.227 kb on + strand, within Echvi_1426 at 1638.227 kb on + strand, within Echvi_1426 at 1638.227 kb on + strand, within Echvi_1426 at 1638.228 kb on - strand, within Echvi_1426 at 1638.228 kb on - strand, within Echvi_1426 at 1638.435 kb on + strand at 1638.435 kb on + strand at 1638.436 kb on - strand at 1638.450 kb on + strand at 1638.451 kb on - strand at 1638.454 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml remove 1,636,673 - -1.3 1,636,673 - +1.8 1,636,673 - +1.3 1,636,747 + Echvi_1425 0.13 -1.5 1,636,748 - Echvi_1425 0.13 +1.2 1,636,757 - Echvi_1425 0.14 -0.4 1,636,833 - Echvi_1425 0.21 -0.2 1,636,917 - Echvi_1425 0.30 -0.4 1,636,928 + Echvi_1425 0.31 -0.2 1,636,929 - Echvi_1425 0.31 +0.6 1,637,103 + Echvi_1425 0.48 +0.4 1,637,103 + Echvi_1425 0.48 -1.9 1,637,104 - Echvi_1425 0.49 +0.1 1,637,146 - Echvi_1425 0.53 -1.7 1,637,202 - Echvi_1425 0.58 +1.8 1,637,210 + Echvi_1425 0.59 -0.4 1,637,278 + Echvi_1425 0.66 -1.2 1,637,298 - Echvi_1425 0.68 +1.0 1,637,298 - Echvi_1425 0.68 -1.3 1,637,319 - Echvi_1425 0.70 +0.6 1,637,363 + Echvi_1425 0.75 -0.2 1,637,402 + Echvi_1425 0.79 +0.1 1,637,402 + Echvi_1425 0.79 -0.7 1,637,403 - Echvi_1425 0.79 +1.8 1,637,417 + Echvi_1425 0.80 -0.3 1,637,417 + Echvi_1425 0.80 +1.8 1,637,417 + Echvi_1425 0.80 +0.7 1,637,418 - Echvi_1425 0.80 +0.5 1,637,418 - Echvi_1425 0.80 +0.6 1,637,418 - Echvi_1425 0.80 -0.3 1,637,418 - Echvi_1425 0.80 -0.3 1,637,418 - Echvi_1425 0.80 -1.4 1,637,485 + Echvi_1425 0.87 -1.4 1,637,485 + +0.2 1,637,485 + Echvi_1425 0.87 -1.5 1,637,490 + Echvi_1425 0.87 +0.3 1,637,491 - Echvi_1425 0.87 +0.5 1,637,491 - Echvi_1425 0.87 +0.7 1,637,503 - Echvi_1425 0.89 +0.2 1,637,504 + Echvi_1425 0.89 +0.5 1,637,505 - Echvi_1425 0.89 +0.7 1,637,560 + +0.2 1,637,561 - +0.2 1,637,577 + +2.6 1,637,577 + +1.1 1,637,578 - +0.8 1,637,578 - +1.2 1,637,578 - +0.3 1,637,578 - -2.2 1,637,578 - +1.4 1,637,578 - +0.3 1,637,608 + -0.7 1,637,632 + -0.7 1,637,655 + -0.1 1,637,656 - +0.2 1,637,656 - +0.3 1,637,747 + Echvi_1426 0.11 +0.2 1,637,748 - Echvi_1426 0.11 -0.6 1,637,748 - Echvi_1426 0.11 +0.4 1,637,760 - Echvi_1426 0.12 -1.0 1,637,835 - Echvi_1426 0.22 -2.2 1,637,975 + Echvi_1426 0.40 +2.6 1,637,975 + Echvi_1426 0.40 +1.2 1,637,976 - Echvi_1426 0.40 -0.2 1,638,051 + Echvi_1426 0.50 -1.4 1,638,127 + Echvi_1426 0.60 -1.0 1,638,140 + Echvi_1426 0.62 +0.2 1,638,213 + Echvi_1426 0.71 -0.4 1,638,215 + Echvi_1426 0.71 +0.9 1,638,215 + Echvi_1426 0.71 +0.4 1,638,215 + Echvi_1426 0.71 +0.6 1,638,216 - Echvi_1426 0.71 -0.1 1,638,216 - Echvi_1426 0.71 -0.6 1,638,216 - Echvi_1426 0.71 -0.4 1,638,216 - Echvi_1426 0.71 -0.7 1,638,216 - Echvi_1426 0.71 +0.0 1,638,221 + Echvi_1426 0.72 -0.2 1,638,227 + Echvi_1426 0.73 -0.2 1,638,227 + Echvi_1426 0.73 -1.7 1,638,227 + Echvi_1426 0.73 -0.1 1,638,227 + Echvi_1426 0.73 +0.8 1,638,228 - Echvi_1426 0.73 -0.3 1,638,228 - Echvi_1426 0.73 +0.6 1,638,435 + -1.1 1,638,435 + +1.3 1,638,436 - -0.2 1,638,450 + +0.5 1,638,451 - +0.3 1,638,454 + -1.8
Or see this region's nucleotide sequence