Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1155

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1153 and Echvi_1154 are separated by 155 nucleotidesEchvi_1154 and Echvi_1155 are separated by 36 nucleotidesEchvi_1155 and Echvi_1156 are separated by 83 nucleotides Echvi_1153: Echvi_1153 - tRNA and rRNA cytosine-C5-methylases, at 1,321,004 to 1,322,401 _1153 Echvi_1154: Echvi_1154 - monofunctional biosynthetic peptidoglycan transglycosylase, at 1,322,557 to 1,323,243 _1154 Echvi_1155: Echvi_1155 - hypothetical protein, at 1,323,280 to 1,323,405 _1155 Echvi_1156: Echvi_1156 - recF protein, at 1,323,489 to 1,324,595 _1156 Position (kb) 1323 1324Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1322.325 kb on + strandat 1322.325 kb on + strandat 1322.326 kb on - strandat 1322.405 kb on + strandat 1322.405 kb on + strandat 1322.405 kb on + strandat 1322.406 kb on - strandat 1322.406 kb on - strandat 1322.406 kb on - strandat 1322.406 kb on - strandat 1322.427 kb on + strandat 1322.427 kb on + strandat 1322.428 kb on - strandat 1322.428 kb on - strandat 1322.430 kb on - strandat 1322.457 kb on - strandat 1322.461 kb on + strandat 1322.461 kb on + strandat 1322.461 kb on + strandat 1322.461 kb on + strandat 1322.461 kb on + strandat 1322.462 kb on - strandat 1322.462 kb on - strandat 1322.520 kb on + strandat 1322.520 kb on + strandat 1322.526 kb on + strandat 1322.527 kb on - strandat 1322.527 kb on - strandat 1322.632 kb on + strand, within Echvi_1154at 1322.638 kb on + strand, within Echvi_1154at 1322.638 kb on + strand, within Echvi_1154at 1322.638 kb on + strand, within Echvi_1154at 1322.638 kb on + strand, within Echvi_1154at 1322.639 kb on - strand, within Echvi_1154at 1322.639 kb on - strand, within Echvi_1154at 1322.639 kb on - strand, within Echvi_1154at 1322.639 kb on - strand, within Echvi_1154at 1322.639 kb on - strand, within Echvi_1154at 1322.651 kb on - strand, within Echvi_1154at 1322.774 kb on + strand, within Echvi_1154at 1322.775 kb on - strand, within Echvi_1154at 1322.817 kb on + strand, within Echvi_1154at 1322.817 kb on + strand, within Echvi_1154at 1322.832 kb on + strand, within Echvi_1154at 1322.833 kb on - strand, within Echvi_1154at 1322.881 kb on - strand, within Echvi_1154at 1322.881 kb on - strand, within Echvi_1154at 1322.957 kb on - strand, within Echvi_1154at 1322.957 kb on - strand, within Echvi_1154at 1322.957 kb on - strand, within Echvi_1154at 1322.962 kb on - strand, within Echvi_1154at 1322.962 kb on - strand, within Echvi_1154at 1322.962 kb on - strand, within Echvi_1154at 1322.988 kb on + strand, within Echvi_1154at 1322.988 kb on + strand, within Echvi_1154at 1322.989 kb on - strand, within Echvi_1154at 1322.989 kb on - strand, within Echvi_1154at 1323.044 kb on - strand, within Echvi_1154at 1323.044 kb on - strand, within Echvi_1154at 1323.073 kb on + strand, within Echvi_1154at 1323.073 kb on + strand, within Echvi_1154at 1323.073 kb on + strand, within Echvi_1154at 1323.074 kb on - strand, within Echvi_1154at 1323.074 kb on - strand, within Echvi_1154at 1323.079 kb on - strand, within Echvi_1154at 1323.079 kb on - strand, within Echvi_1154at 1323.128 kb on + strand, within Echvi_1154at 1323.128 kb on + strand, within Echvi_1154at 1323.128 kb on + strand, within Echvi_1154at 1323.172 kb on + strand, within Echvi_1154at 1323.172 kb on + strand, within Echvi_1154at 1323.174 kb on + strand, within Echvi_1154at 1323.174 kb on + strandat 1323.175 kb on - strandat 1323.200 kb on + strandat 1323.200 kb on + strandat 1323.201 kb on - strandat 1323.228 kb on - strandat 1323.255 kb on + strandat 1323.274 kb on + strandat 1323.274 kb on + strandat 1323.274 kb on + strandat 1323.275 kb on - strandat 1323.275 kb on - strandat 1323.277 kb on + strandat 1323.277 kb on + strandat 1323.277 kb on + strandat 1323.277 kb on + strandat 1323.277 kb on + strandat 1323.278 kb on - strandat 1323.278 kb on - strandat 1323.278 kb on - strandat 1323.278 kb on - strandat 1323.278 kb on - strandat 1323.278 kb on - strandat 1323.285 kb on + strandat 1323.285 kb on + strandat 1323.285 kb on + strandat 1323.296 kb on + strand, within Echvi_1155at 1323.296 kb on + strand, within Echvi_1155at 1323.321 kb on + strand, within Echvi_1155at 1323.351 kb on + strand, within Echvi_1155at 1323.351 kb on + strand, within Echvi_1155at 1323.352 kb on - strand, within Echvi_1155at 1323.352 kb on - strand, within Echvi_1155at 1323.352 kb on - strand, within Echvi_1155at 1323.404 kb on - strandat 1323.481 kb on + strandat 1323.490 kb on + strandat 1323.530 kb on - strandat 1323.530 kb on - strandat 1323.564 kb on - strandat 1323.663 kb on - strand, within Echvi_1156at 1323.672 kb on - strand, within Echvi_1156at 1323.802 kb on - strand, within Echvi_1156at 1323.931 kb on - strand, within Echvi_1156at 1323.961 kb on + strand, within Echvi_1156at 1323.972 kb on + strand, within Echvi_1156at 1323.984 kb on - strand, within Echvi_1156at 1323.993 kb on + strand, within Echvi_1156at 1323.993 kb on + strand, within Echvi_1156at 1323.994 kb on - strand, within Echvi_1156at 1323.995 kb on + strand, within Echvi_1156at 1324.015 kb on + strand, within Echvi_1156at 1324.015 kb on + strand, within Echvi_1156at 1324.016 kb on - strand, within Echvi_1156at 1324.135 kb on + strand, within Echvi_1156at 1324.135 kb on + strand, within Echvi_1156at 1324.136 kb on - strand, within Echvi_1156at 1324.157 kb on - strand, within Echvi_1156at 1324.233 kb on - strand, within Echvi_1156at 1324.271 kb on + strand, within Echvi_1156at 1324.292 kb on - strand, within Echvi_1156at 1324.292 kb on - strand, within Echvi_1156at 1324.304 kb on + strand, within Echvi_1156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
remove
1,322,325 + +0.8
1,322,325 + -1.4
1,322,326 - +1.4
1,322,405 + +0.3
1,322,405 + +0.2
1,322,405 + +0.1
1,322,406 - -0.1
1,322,406 - +1.6
1,322,406 - +2.0
1,322,406 - +0.8
1,322,427 + -0.8
1,322,427 + +0.7
1,322,428 - +0.6
1,322,428 - -1.8
1,322,430 - -1.8
1,322,457 - +0.3
1,322,461 + -1.2
1,322,461 + -2.1
1,322,461 + -0.2
1,322,461 + -2.2
1,322,461 + -1.0
1,322,462 - +0.6
1,322,462 - -0.3
1,322,520 + -0.7
1,322,520 + -0.5
1,322,526 + +0.2
1,322,527 - +0.4
1,322,527 - -0.4
1,322,632 + Echvi_1154 0.11 +0.8
1,322,638 + Echvi_1154 0.12 -2.5
1,322,638 + Echvi_1154 0.12 +0.2
1,322,638 + Echvi_1154 0.12 +0.1
1,322,638 + Echvi_1154 0.12 +0.3
1,322,639 - Echvi_1154 0.12 +0.7
1,322,639 - Echvi_1154 0.12 -1.8
1,322,639 - Echvi_1154 0.12 -0.0
1,322,639 - Echvi_1154 0.12 -0.1
1,322,639 - Echvi_1154 0.12 -0.1
1,322,651 - Echvi_1154 0.14 +0.4
1,322,774 + Echvi_1154 0.32 +0.1
1,322,775 - Echvi_1154 0.32 -0.3
1,322,817 + Echvi_1154 0.38 -0.4
1,322,817 + Echvi_1154 0.38 +0.4
1,322,832 + Echvi_1154 0.40 +0.9
1,322,833 - Echvi_1154 0.40 -0.5
1,322,881 - Echvi_1154 0.47 +1.3
1,322,881 - Echvi_1154 0.47 -0.3
1,322,957 - Echvi_1154 0.58 +0.3
1,322,957 - Echvi_1154 0.58 -0.1
1,322,957 - Echvi_1154 0.58 +1.2
1,322,962 - Echvi_1154 0.59 -0.3
1,322,962 - Echvi_1154 0.59 -0.8
1,322,962 - Echvi_1154 0.59 +0.4
1,322,988 + Echvi_1154 0.63 -0.3
1,322,988 + Echvi_1154 0.63 -1.2
1,322,989 - Echvi_1154 0.63 -1.0
1,322,989 - Echvi_1154 0.63 +0.5
1,323,044 - Echvi_1154 0.71 +0.0
1,323,044 - Echvi_1154 0.71 +0.2
1,323,073 + Echvi_1154 0.75 +0.7
1,323,073 + Echvi_1154 0.75 +1.6
1,323,073 + Echvi_1154 0.75 -0.4
1,323,074 - Echvi_1154 0.75 +0.8
1,323,074 - Echvi_1154 0.75 -0.3
1,323,079 - Echvi_1154 0.76 +0.3
1,323,079 - Echvi_1154 0.76 -0.9
1,323,128 + Echvi_1154 0.83 -0.9
1,323,128 + Echvi_1154 0.83 +0.9
1,323,128 + Echvi_1154 0.83 -1.1
1,323,172 + Echvi_1154 0.90 +0.0
1,323,172 + Echvi_1154 0.90 -1.3
1,323,174 + Echvi_1154 0.90 +1.5
1,323,174 + +0.6
1,323,175 - -1.8
1,323,200 + +1.2
1,323,200 + -0.9
1,323,201 - -0.8
1,323,228 - -0.3
1,323,255 + +0.0
1,323,274 + +0.7
1,323,274 + -0.5
1,323,274 + +0.2
1,323,275 - +0.8
1,323,275 - +0.4
1,323,277 + +1.1
1,323,277 + -0.3
1,323,277 + +1.2
1,323,277 + +0.2
1,323,277 + -1.4
1,323,278 - +1.4
1,323,278 - -0.4
1,323,278 - -0.5
1,323,278 - -0.5
1,323,278 - +1.5
1,323,278 - -1.9
1,323,285 + -0.8
1,323,285 + +0.3
1,323,285 + +0.3
1,323,296 + Echvi_1155 0.13 -0.5
1,323,296 + Echvi_1155 0.13 +0.4
1,323,321 + Echvi_1155 0.33 -2.8
1,323,351 + Echvi_1155 0.56 +0.4
1,323,351 + Echvi_1155 0.56 -1.2
1,323,352 - Echvi_1155 0.57 -1.1
1,323,352 - Echvi_1155 0.57 -0.3
1,323,352 - Echvi_1155 0.57 -0.5
1,323,404 - -0.5
1,323,481 + +0.2
1,323,490 + -0.7
1,323,530 - +0.7
1,323,530 - +0.5
1,323,564 - +1.3
1,323,663 - Echvi_1156 0.16 -1.1
1,323,672 - Echvi_1156 0.17 -1.2
1,323,802 - Echvi_1156 0.28 -0.0
1,323,931 - Echvi_1156 0.40 -1.6
1,323,961 + Echvi_1156 0.43 +0.4
1,323,972 + Echvi_1156 0.44 +0.6
1,323,984 - Echvi_1156 0.45 +0.6
1,323,993 + Echvi_1156 0.46 +0.6
1,323,993 + Echvi_1156 0.46 +0.4
1,323,994 - Echvi_1156 0.46 +0.2
1,323,995 + Echvi_1156 0.46 -0.1
1,324,015 + Echvi_1156 0.48 +0.4
1,324,015 + Echvi_1156 0.48 -0.2
1,324,016 - Echvi_1156 0.48 +0.3
1,324,135 + Echvi_1156 0.58 +0.3
1,324,135 + Echvi_1156 0.58 +0.6
1,324,136 - Echvi_1156 0.58 +2.6
1,324,157 - Echvi_1156 0.60 -0.2
1,324,233 - Echvi_1156 0.67 +0.3
1,324,271 + Echvi_1156 0.71 +0.8
1,324,292 - Echvi_1156 0.73 -0.3
1,324,292 - Echvi_1156 0.73 -0.8
1,324,304 + Echvi_1156 0.74 -0.4

Or see this region's nucleotide sequence