Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1073

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1071 and Echvi_1072 are separated by 149 nucleotidesEchvi_1072 and Echvi_1073 are separated by 59 nucleotidesEchvi_1073 and Echvi_1074 are separated by 876 nucleotides Echvi_1071: Echvi_1071 - acetyl-CoA acetyltransferases, at 1,231,535 to 1,232,710 _1071 Echvi_1072: Echvi_1072 - S23 ribosomal protein., at 1,232,860 to 1,233,210 _1072 Echvi_1073: Echvi_1073 - Acyl-CoA dehydrogenases, at 1,233,270 to 1,235,069 _1073 Echvi_1074: Echvi_1074 - hypothetical protein, at 1,235,946 to 1,236,080 _1074 Position (kb) 1233 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1 2at 1232.440 kb on + strand, within Echvi_1071at 1232.533 kb on + strand, within Echvi_1071at 1232.533 kb on + strand, within Echvi_1071at 1232.578 kb on - strand, within Echvi_1071at 1232.584 kb on + strand, within Echvi_1071at 1232.584 kb on + strand, within Echvi_1071at 1232.585 kb on - strand, within Echvi_1071at 1232.642 kb on + strandat 1232.708 kb on + strandat 1232.708 kb on + strandat 1232.708 kb on + strandat 1232.709 kb on - strandat 1232.722 kb on + strandat 1232.725 kb on + strandat 1232.726 kb on - strandat 1232.760 kb on + strandat 1232.761 kb on - strandat 1232.780 kb on - strandat 1232.780 kb on - strandat 1232.780 kb on - strandat 1232.855 kb on - strandat 1232.866 kb on - strandat 1232.870 kb on - strandat 1232.871 kb on + strandat 1232.872 kb on - strandat 1232.885 kb on + strandat 1232.920 kb on + strand, within Echvi_1072at 1232.920 kb on + strand, within Echvi_1072at 1232.920 kb on + strand, within Echvi_1072at 1232.934 kb on + strand, within Echvi_1072at 1232.956 kb on + strand, within Echvi_1072at 1232.956 kb on + strand, within Echvi_1072at 1232.957 kb on - strand, within Echvi_1072at 1232.957 kb on - strand, within Echvi_1072at 1233.054 kb on + strand, within Echvi_1072at 1233.055 kb on - strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.062 kb on + strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.063 kb on - strand, within Echvi_1072at 1233.067 kb on + strand, within Echvi_1072at 1233.068 kb on - strand, within Echvi_1072at 1233.090 kb on + strand, within Echvi_1072at 1233.090 kb on + strand, within Echvi_1072at 1233.090 kb on + strand, within Echvi_1072at 1233.098 kb on + strand, within Echvi_1072at 1233.098 kb on + strand, within Echvi_1072at 1233.098 kb on + strand, within Echvi_1072at 1233.098 kb on + strand, within Echvi_1072at 1233.098 kb on + strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.099 kb on - strand, within Echvi_1072at 1233.102 kb on + strand, within Echvi_1072at 1233.123 kb on - strand, within Echvi_1072at 1233.184 kb on + strandat 1233.185 kb on - strandat 1233.185 kb on - strandat 1233.185 kb on - strandat 1233.208 kb on + strandat 1233.208 kb on + strandat 1233.221 kb on + strandat 1233.221 kb on + strandat 1233.221 kb on + strandat 1233.222 kb on - strandat 1233.226 kb on + strandat 1233.226 kb on + strandat 1233.226 kb on + strandat 1233.227 kb on - strandat 1233.227 kb on - strandat 1233.227 kb on - strandat 1233.229 kb on + strandat 1233.246 kb on + strandat 1233.250 kb on + strandat 1233.250 kb on + strandat 1233.251 kb on - strandat 1233.287 kb on + strandat 1233.287 kb on + strandat 1233.398 kb on + strandat 1233.440 kb on + strandat 1233.440 kb on + strandat 1233.496 kb on + strand, within Echvi_1073at 1233.496 kb on + strand, within Echvi_1073at 1233.497 kb on - strand, within Echvi_1073at 1233.497 kb on - strand, within Echvi_1073at 1233.522 kb on + strand, within Echvi_1073at 1233.604 kb on - strand, within Echvi_1073at 1233.604 kb on - strand, within Echvi_1073at 1233.615 kb on - strand, within Echvi_1073at 1233.643 kb on - strand, within Echvi_1073at 1233.643 kb on - strand, within Echvi_1073at 1233.645 kb on + strand, within Echvi_1073at 1233.646 kb on - strand, within Echvi_1073at 1233.672 kb on + strand, within Echvi_1073at 1233.792 kb on + strand, within Echvi_1073at 1233.792 kb on + strand, within Echvi_1073at 1233.793 kb on - strand, within Echvi_1073at 1233.965 kb on + strand, within Echvi_1073at 1234.061 kb on + strand, within Echvi_1073at 1234.062 kb on - strand, within Echvi_1073at 1234.131 kb on + strand, within Echvi_1073at 1234.131 kb on + strand, within Echvi_1073at 1234.169 kb on + strand, within Echvi_1073at 1234.218 kb on + strand, within Echvi_1073at 1234.240 kb on - strand, within Echvi_1073at 1234.325 kb on - strand, within Echvi_1073at 1234.383 kb on + strand, within Echvi_1073at 1234.383 kb on + strand, within Echvi_1073at 1234.383 kb on + strand, within Echvi_1073at 1234.384 kb on - strand, within Echvi_1073at 1234.384 kb on - strand, within Echvi_1073at 1234.384 kb on - strand, within Echvi_1073at 1234.384 kb on - strand, within Echvi_1073at 1234.384 kb on - strand, within Echvi_1073at 1234.384 kb on - strand, within Echvi_1073at 1234.425 kb on + strand, within Echvi_1073at 1234.482 kb on + strand, within Echvi_1073at 1234.482 kb on + strand, within Echvi_1073at 1234.482 kb on + strand, within Echvi_1073at 1234.482 kb on + strand, within Echvi_1073at 1234.482 kb on + strand, within Echvi_1073at 1234.482 kb on + strand, within Echvi_1073at 1234.483 kb on - strand, within Echvi_1073at 1234.483 kb on - strand, within Echvi_1073at 1234.483 kb on - strand, within Echvi_1073at 1234.661 kb on - strand, within Echvi_1073at 1234.772 kb on - strand, within Echvi_1073at 1234.779 kb on + strand, within Echvi_1073at 1234.779 kb on + strand, within Echvi_1073at 1234.780 kb on - strand, within Echvi_1073at 1234.780 kb on - strand, within Echvi_1073at 1234.780 kb on - strand, within Echvi_1073at 1234.820 kb on + strand, within Echvi_1073at 1234.864 kb on + strand, within Echvi_1073at 1234.865 kb on - strand, within Echvi_1073at 1234.873 kb on - strand, within Echvi_1073at 1234.893 kb on - strandat 1234.910 kb on + strandat 1235.053 kb on - strandat 1235.053 kb on - strandat 1235.053 kb on - strandat 1235.058 kb on + strandat 1235.058 kb on + strandat 1235.059 kb on - strandat 1235.094 kb on - strandat 1235.094 kb on - strandat 1235.140 kb on + strandat 1235.154 kb on - strandat 1235.154 kb on - strandat 1235.210 kb on + strandat 1235.211 kb on - strandat 1235.211 kb on - strandat 1235.215 kb on + strandat 1235.215 kb on + strandat 1235.216 kb on - strandat 1235.293 kb on + strandat 1235.293 kb on + strandat 1235.293 kb on + strandat 1235.293 kb on + strandat 1235.294 kb on - strandat 1235.294 kb on - strandat 1235.294 kb on - strandat 1235.317 kb on + strandat 1235.371 kb on - strandat 1235.371 kb on - strandat 1235.395 kb on - strandat 1235.395 kb on - strandat 1235.571 kb on - strandat 1235.707 kb on + strandat 1235.713 kb on + strandat 1235.723 kb on + strandat 1235.723 kb on + strandat 1235.723 kb on + strandat 1235.737 kb on + strandat 1235.737 kb on + strandat 1235.737 kb on + strandat 1235.737 kb on + strandat 1235.737 kb on + strandat 1235.778 kb on - strandat 1235.833 kb on + strandat 1235.838 kb on + strandat 1235.895 kb on + strandat 1235.908 kb on + strandat 1235.908 kb on + strandat 1235.909 kb on - strandat 1235.985 kb on + strand, within Echvi_1074at 1235.985 kb on + strand, within Echvi_1074at 1235.985 kb on + strand, within Echvi_1074at 1235.985 kb on + strand, within Echvi_1074at 1235.985 kb on + strand, within Echvi_1074at 1235.986 kb on - strand, within Echvi_1074at 1235.986 kb on - strand, within Echvi_1074at 1235.987 kb on + strand, within Echvi_1074at 1235.987 kb on + strand, within Echvi_1074at 1235.987 kb on + strand, within Echvi_1074at 1235.988 kb on - strand, within Echvi_1074at 1236.004 kb on - strand, within Echvi_1074at 1236.020 kb on + strand, within Echvi_1074at 1236.021 kb on - strand, within Echvi_1074at 1236.047 kb on + strand, within Echvi_1074at 1236.048 kb on - strand, within Echvi_1074

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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1,232,440 + Echvi_1071 0.77 -0.8
1,232,533 + Echvi_1071 0.85 -1.6
1,232,533 + Echvi_1071 0.85 -1.2
1,232,578 - Echvi_1071 0.89 +0.1
1,232,584 + Echvi_1071 0.89 -0.0
1,232,584 + Echvi_1071 0.89 -1.1
1,232,585 - Echvi_1071 0.89 -1.7
1,232,642 + -2.0
1,232,708 + +0.1
1,232,708 + -0.1
1,232,708 + -2.1
1,232,709 - +0.8
1,232,722 + -0.5
1,232,725 + -1.1
1,232,726 - +0.8
1,232,760 + +0.2
1,232,761 - -1.1
1,232,780 - +0.8
1,232,780 - -0.6
1,232,780 - -0.2
1,232,855 - -0.1
1,232,866 - +0.4
1,232,870 - -0.8
1,232,871 + -0.2
1,232,872 - +0.9
1,232,885 + -1.3
1,232,920 + Echvi_1072 0.17 +0.7
1,232,920 + Echvi_1072 0.17 -0.2
1,232,920 + Echvi_1072 0.17 +0.6
1,232,934 + Echvi_1072 0.21 +0.6
1,232,956 + Echvi_1072 0.27 -0.4
1,232,956 + Echvi_1072 0.27 +1.0
1,232,957 - Echvi_1072 0.28 +1.4
1,232,957 - Echvi_1072 0.28 -0.4
1,233,054 + Echvi_1072 0.55 +0.6
1,233,055 - Echvi_1072 0.56 +1.3
1,233,062 + Echvi_1072 0.58 +0.3
1,233,062 + Echvi_1072 0.58 +0.0
1,233,062 + Echvi_1072 0.58 +0.5
1,233,062 + Echvi_1072 0.58 -0.4
1,233,062 + Echvi_1072 0.58 +1.4
1,233,062 + Echvi_1072 0.58 -1.0
1,233,062 + Echvi_1072 0.58 -0.3
1,233,062 + Echvi_1072 0.58 -1.5
1,233,062 + Echvi_1072 0.58 -0.8
1,233,062 + Echvi_1072 0.58 +1.0
1,233,062 + Echvi_1072 0.58 -1.2
1,233,063 - Echvi_1072 0.58 -0.1
1,233,063 - Echvi_1072 0.58 +0.1
1,233,063 - Echvi_1072 0.58 -0.3
1,233,063 - Echvi_1072 0.58 +0.2
1,233,063 - Echvi_1072 0.58 -0.1
1,233,063 - Echvi_1072 0.58 -0.9
1,233,063 - Echvi_1072 0.58 -0.0
1,233,063 - Echvi_1072 0.58 +0.5
1,233,067 + Echvi_1072 0.59 +0.3
1,233,068 - Echvi_1072 0.59 +0.4
1,233,090 + Echvi_1072 0.66 -0.4
1,233,090 + Echvi_1072 0.66 -2.1
1,233,090 + Echvi_1072 0.66 -0.5
1,233,098 + Echvi_1072 0.68 +1.9
1,233,098 + Echvi_1072 0.68 -0.5
1,233,098 + Echvi_1072 0.68 -1.0
1,233,098 + Echvi_1072 0.68 +0.7
1,233,098 + Echvi_1072 0.68 -1.5
1,233,099 - Echvi_1072 0.68 +0.1
1,233,099 - Echvi_1072 0.68 +0.4
1,233,099 - Echvi_1072 0.68 +1.3
1,233,099 - Echvi_1072 0.68 +0.3
1,233,099 - Echvi_1072 0.68 -0.8
1,233,099 - Echvi_1072 0.68 -1.5
1,233,099 - Echvi_1072 0.68 +0.0
1,233,102 + Echvi_1072 0.69 +0.3
1,233,123 - Echvi_1072 0.75 -1.5
1,233,184 + -0.7
1,233,185 - +0.3
1,233,185 - +0.8
1,233,185 - -1.1
1,233,208 + +0.2
1,233,208 + +0.2
1,233,221 + +0.7
1,233,221 + -0.5
1,233,221 + +0.3
1,233,222 - +0.3
1,233,226 + +0.6
1,233,226 + -1.1
1,233,226 + +0.3
1,233,227 - +0.6
1,233,227 - +1.1
1,233,227 - -0.0
1,233,229 + +0.8
1,233,246 + +0.6
1,233,250 + +0.9
1,233,250 + -0.8
1,233,251 - +0.7
1,233,287 + +1.0
1,233,287 + -0.0
1,233,398 + +1.7
1,233,440 + -1.0
1,233,440 + -0.7
1,233,496 + Echvi_1073 0.13 -0.1
1,233,496 + Echvi_1073 0.13 +0.6
1,233,497 - Echvi_1073 0.13 +1.3
1,233,497 - Echvi_1073 0.13 -0.8
1,233,522 + Echvi_1073 0.14 -2.1
1,233,604 - Echvi_1073 0.19 +0.4
1,233,604 - Echvi_1073 0.19 -0.3
1,233,615 - Echvi_1073 0.19 +1.9
1,233,643 - Echvi_1073 0.21 +0.7
1,233,643 - Echvi_1073 0.21 -0.8
1,233,645 + Echvi_1073 0.21 -0.8
1,233,646 - Echvi_1073 0.21 -0.2
1,233,672 + Echvi_1073 0.22 +1.7
1,233,792 + Echvi_1073 0.29 +0.3
1,233,792 + Echvi_1073 0.29 +0.6
1,233,793 - Echvi_1073 0.29 -0.5
1,233,965 + Echvi_1073 0.39 +0.3
1,234,061 + Echvi_1073 0.44 -1.9
1,234,062 - Echvi_1073 0.44 +0.5
1,234,131 + Echvi_1073 0.48 +0.5
1,234,131 + Echvi_1073 0.48 +0.1
1,234,169 + Echvi_1073 0.50 -1.4
1,234,218 + Echvi_1073 0.53 -1.2
1,234,240 - Echvi_1073 0.54 -0.3
1,234,325 - Echvi_1073 0.59 -1.0
1,234,383 + Echvi_1073 0.62 +1.0
1,234,383 + Echvi_1073 0.62 +0.5
1,234,383 + Echvi_1073 0.62 -0.9
1,234,384 - Echvi_1073 0.62 -0.6
1,234,384 - Echvi_1073 0.62 -0.4
1,234,384 - Echvi_1073 0.62 +0.1
1,234,384 - Echvi_1073 0.62 -0.6
1,234,384 - Echvi_1073 0.62 -0.6
1,234,384 - Echvi_1073 0.62 +1.6
1,234,425 + Echvi_1073 0.64 +0.3
1,234,482 + Echvi_1073 0.67 +1.2
1,234,482 + Echvi_1073 0.67 -0.1
1,234,482 + Echvi_1073 0.67 -1.4
1,234,482 + Echvi_1073 0.67 +0.7
1,234,482 + Echvi_1073 0.67 +0.1
1,234,482 + Echvi_1073 0.67 -1.1
1,234,483 - Echvi_1073 0.67 +0.0
1,234,483 - Echvi_1073 0.67 -0.2
1,234,483 - Echvi_1073 0.67 +0.0
1,234,661 - Echvi_1073 0.77 -0.5
1,234,772 - Echvi_1073 0.83 -0.5
1,234,779 + Echvi_1073 0.84 -0.3
1,234,779 + Echvi_1073 0.84 +0.0
1,234,780 - Echvi_1073 0.84 +0.7
1,234,780 - Echvi_1073 0.84 +0.9
1,234,780 - Echvi_1073 0.84 +0.5
1,234,820 + Echvi_1073 0.86 +0.9
1,234,864 + Echvi_1073 0.89 -0.8
1,234,865 - Echvi_1073 0.89 -1.1
1,234,873 - Echvi_1073 0.89 -0.3
1,234,893 - +0.6
1,234,910 + -0.8
1,235,053 - -1.2
1,235,053 - +0.1
1,235,053 - -0.7
1,235,058 + -2.1
1,235,058 + +1.9
1,235,059 - +1.6
1,235,094 - -0.5
1,235,094 - +0.5
1,235,140 + -1.1
1,235,154 - +1.6
1,235,154 - -1.1
1,235,210 + +2.0
1,235,211 - -0.2
1,235,211 - +0.3
1,235,215 + -1.4
1,235,215 + -1.1
1,235,216 - +0.1
1,235,293 + +0.7
1,235,293 + -0.5
1,235,293 + -0.8
1,235,293 + -0.2
1,235,294 - -1.2
1,235,294 - -0.4
1,235,294 - +1.4
1,235,317 + -0.0
1,235,371 - +0.6
1,235,371 - -0.4
1,235,395 - -0.2
1,235,395 - -0.5
1,235,571 - -1.6
1,235,707 + +1.0
1,235,713 + +2.2
1,235,723 + +0.3
1,235,723 + -0.1
1,235,723 + +1.4
1,235,737 + +1.8
1,235,737 + +0.2
1,235,737 + -0.2
1,235,737 + -2.2
1,235,737 + -0.3
1,235,778 - -1.0
1,235,833 + -0.3
1,235,838 + -0.7
1,235,895 + -0.1
1,235,908 + +0.2
1,235,908 + -0.0
1,235,909 - -0.2
1,235,985 + Echvi_1074 0.29 +1.7
1,235,985 + Echvi_1074 0.29 +0.9
1,235,985 + Echvi_1074 0.29 -0.1
1,235,985 + Echvi_1074 0.29 -0.7
1,235,985 + Echvi_1074 0.29 +0.4
1,235,986 - Echvi_1074 0.30 +0.4
1,235,986 - Echvi_1074 0.30 +0.7
1,235,987 + Echvi_1074 0.30 +1.2
1,235,987 + Echvi_1074 0.30 -1.8
1,235,987 + Echvi_1074 0.30 +0.5
1,235,988 - Echvi_1074 0.31 +0.1
1,236,004 - Echvi_1074 0.43 -0.3
1,236,020 + Echvi_1074 0.55 -0.5
1,236,021 - Echvi_1074 0.56 -0.8
1,236,047 + Echvi_1074 0.75 +0.1
1,236,048 - Echvi_1074 0.76 +0.4

Or see this region's nucleotide sequence