Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0357

Experiment: m.b. Thallium(I) acetate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0356 and Echvi_0357 are separated by 53 nucleotidesEchvi_0357 and Echvi_0358 are separated by 387 nucleotidesEchvi_0358 and Echvi_0359 overlap by 8 nucleotides Echvi_0356: Echvi_0356 - Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, at 383,672 to 385,072 _0356 Echvi_0357: Echvi_0357 - hypothetical protein, at 385,126 to 385,608 _0357 Echvi_0358: Echvi_0358 - RNA polymerase sigma factor, sigma-70 family, at 385,996 to 386,565 _0358 Echvi_0359: Echvi_0359 - hypothetical protein, at 386,558 to 387,343 _0359 Position (kb) 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 384.146 kb on + strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.146 kb on + strand, within Echvi_0356at 384.147 kb on - strand, within Echvi_0356at 384.147 kb on - strand, within Echvi_0356at 384.147 kb on - strand, within Echvi_0356at 384.148 kb on + strand, within Echvi_0356at 384.148 kb on + strand, within Echvi_0356at 384.148 kb on + strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.149 kb on - strand, within Echvi_0356at 384.161 kb on - strand, within Echvi_0356at 384.247 kb on + strand, within Echvi_0356at 384.380 kb on + strand, within Echvi_0356at 384.444 kb on - strand, within Echvi_0356at 384.444 kb on - strand, within Echvi_0356at 384.444 kb on - strand, within Echvi_0356at 384.446 kb on + strand, within Echvi_0356at 384.447 kb on - strand, within Echvi_0356at 384.447 kb on - strand, within Echvi_0356at 384.495 kb on - strand, within Echvi_0356at 384.495 kb on - strand, within Echvi_0356at 384.620 kb on + strand, within Echvi_0356at 384.620 kb on + strand, within Echvi_0356at 384.674 kb on - strand, within Echvi_0356at 384.725 kb on + strand, within Echvi_0356at 384.725 kb on + strand, within Echvi_0356at 384.726 kb on - strand, within Echvi_0356at 384.727 kb on + strand, within Echvi_0356at 384.802 kb on - strand, within Echvi_0356at 384.831 kb on - strand, within Echvi_0356at 384.838 kb on - strand, within Echvi_0356at 384.866 kb on + strand, within Echvi_0356at 384.867 kb on - strand, within Echvi_0356at 384.868 kb on + strand, within Echvi_0356at 384.868 kb on + strand, within Echvi_0356at 384.869 kb on - strandat 384.925 kb on + strand, within Echvi_0356at 384.925 kb on + strand, within Echvi_0356at 384.945 kb on + strandat 385.021 kb on + strandat 385.021 kb on + strandat 385.190 kb on + strand, within Echvi_0357at 385.191 kb on - strand, within Echvi_0357at 385.356 kb on + strand, within Echvi_0357at 385.357 kb on - strand, within Echvi_0357at 385.516 kb on + strand, within Echvi_0357at 385.516 kb on + strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.517 kb on - strand, within Echvi_0357at 385.531 kb on + strand, within Echvi_0357at 385.533 kb on + strand, within Echvi_0357at 385.533 kb on + strand, within Echvi_0357at 385.592 kb on - strandat 385.603 kb on + strandat 385.614 kb on + strandat 385.627 kb on - strandat 385.657 kb on + strandat 385.660 kb on + strandat 385.660 kb on + strandat 385.660 kb on + strandat 385.661 kb on - strandat 385.661 kb on - strandat 385.688 kb on - strandat 385.691 kb on - strandat 385.724 kb on + strandat 385.768 kb on - strandat 385.831 kb on + strandat 385.832 kb on - strandat 385.900 kb on + strandat 385.900 kb on + strandat 385.900 kb on + strandat 385.901 kb on - strandat 385.901 kb on - strandat 385.904 kb on + strandat 385.904 kb on + strandat 385.904 kb on + strandat 385.905 kb on - strandat 385.909 kb on + strandat 385.910 kb on - strandat 386.036 kb on + strandat 386.036 kb on + strandat 386.037 kb on - strandat 386.080 kb on + strand, within Echvi_0358at 386.081 kb on - strand, within Echvi_0358at 386.081 kb on - strand, within Echvi_0358at 386.111 kb on + strand, within Echvi_0358at 386.111 kb on + strand, within Echvi_0358at 386.111 kb on + strand, within Echvi_0358at 386.123 kb on - strand, within Echvi_0358at 386.123 kb on - strand, within Echvi_0358at 386.125 kb on - strand, within Echvi_0358at 386.197 kb on + strand, within Echvi_0358at 386.294 kb on + strand, within Echvi_0358at 386.333 kb on - strand, within Echvi_0358at 386.417 kb on - strand, within Echvi_0358at 386.417 kb on - strand, within Echvi_0358at 386.417 kb on - strand, within Echvi_0358at 386.432 kb on - strand, within Echvi_0358at 386.513 kb on + strandat 386.514 kb on - strandat 386.514 kb on - strandat 386.535 kb on - strandat 386.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.05 mg/ml
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384,146 + Echvi_0356 0.34 +1.2
384,146 + Echvi_0356 0.34 +1.1
384,146 + Echvi_0356 0.34 -0.3
384,146 + Echvi_0356 0.34 +0.4
384,147 - Echvi_0356 0.34 -2.6
384,147 - Echvi_0356 0.34 -1.4
384,147 - Echvi_0356 0.34 -1.5
384,148 + Echvi_0356 0.34 +0.2
384,148 + Echvi_0356 0.34 +2.6
384,148 + Echvi_0356 0.34 +1.0
384,149 - Echvi_0356 0.34 -1.7
384,149 - Echvi_0356 0.34 -0.6
384,149 - Echvi_0356 0.34 -0.3
384,149 - Echvi_0356 0.34 +0.2
384,149 - Echvi_0356 0.34 +1.0
384,161 - Echvi_0356 0.35 -0.3
384,247 + Echvi_0356 0.41 -0.3
384,380 + Echvi_0356 0.51 -0.3
384,444 - Echvi_0356 0.55 -0.5
384,444 - Echvi_0356 0.55 -0.2
384,444 - Echvi_0356 0.55 -2.8
384,446 + Echvi_0356 0.55 -0.7
384,447 - Echvi_0356 0.55 -1.9
384,447 - Echvi_0356 0.55 -0.2
384,495 - Echvi_0356 0.59 -0.9
384,495 - Echvi_0356 0.59 -0.1
384,620 + Echvi_0356 0.68 -0.6
384,620 + Echvi_0356 0.68 +0.5
384,674 - Echvi_0356 0.72 +0.0
384,725 + Echvi_0356 0.75 -0.6
384,725 + Echvi_0356 0.75 +0.1
384,726 - Echvi_0356 0.75 -1.1
384,727 + Echvi_0356 0.75 -0.3
384,802 - Echvi_0356 0.81 +1.0
384,831 - Echvi_0356 0.83 -0.2
384,838 - Echvi_0356 0.83 -0.5
384,866 + Echvi_0356 0.85 -0.9
384,867 - Echvi_0356 0.85 +2.6
384,868 + Echvi_0356 0.85 -0.4
384,868 + Echvi_0356 0.85 -1.4
384,869 - +0.6
384,925 + Echvi_0356 0.89 -0.2
384,925 + Echvi_0356 0.89 +0.1
384,945 + -0.3
385,021 + +0.5
385,021 + -1.1
385,190 + Echvi_0357 0.13 -0.1
385,191 - Echvi_0357 0.13 -2.6
385,356 + Echvi_0357 0.48 -0.3
385,357 - Echvi_0357 0.48 -0.7
385,516 + Echvi_0357 0.81 -1.3
385,516 + Echvi_0357 0.81 -0.4
385,517 - Echvi_0357 0.81 -0.8
385,517 - Echvi_0357 0.81 -0.1
385,517 - Echvi_0357 0.81 +1.7
385,517 - Echvi_0357 0.81 -0.1
385,517 - Echvi_0357 0.81 -1.4
385,531 + Echvi_0357 0.84 +0.0
385,533 + Echvi_0357 0.84 -1.7
385,533 + Echvi_0357 0.84 -0.2
385,592 - -2.7
385,603 + +0.1
385,614 + +0.0
385,627 - +0.6
385,657 + -0.2
385,660 + -2.0
385,660 + -1.8
385,660 + -0.3
385,661 - +0.6
385,661 - -0.8
385,688 - +0.2
385,691 - -0.0
385,724 + -0.5
385,768 - -0.4
385,831 + +1.9
385,832 - -1.0
385,900 + +1.0
385,900 + +1.6
385,900 + -0.0
385,901 - -0.7
385,901 - -0.4
385,904 + +2.6
385,904 + +0.9
385,904 + -0.4
385,905 - -0.6
385,909 + +1.8
385,910 - -0.3
386,036 + +0.4
386,036 + +0.9
386,037 - -0.1
386,080 + Echvi_0358 0.15 +0.4
386,081 - Echvi_0358 0.15 +0.3
386,081 - Echvi_0358 0.15 +0.0
386,111 + Echvi_0358 0.20 +0.8
386,111 + Echvi_0358 0.20 +1.6
386,111 + Echvi_0358 0.20 +2.6
386,123 - Echvi_0358 0.22 -0.2
386,123 - Echvi_0358 0.22 -0.0
386,125 - Echvi_0358 0.23 -2.6
386,197 + Echvi_0358 0.35 +0.6
386,294 + Echvi_0358 0.52 +1.0
386,333 - Echvi_0358 0.59 +0.7
386,417 - Echvi_0358 0.74 +2.6
386,417 - Echvi_0358 0.74 +0.7
386,417 - Echvi_0358 0.74 -0.8
386,432 - Echvi_0358 0.76 +1.2
386,513 + +1.1
386,514 - +0.6
386,514 - +0.3
386,535 - -0.4
386,535 - +0.7

Or see this region's nucleotide sequence