Strain Fitness in Agrobacterium fabrum C58 around Atu5205

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5204 and Atu5205 are separated by 238 nucleotidesAtu5205 and Atu5206 are separated by 274 nucleotides Atu5204: Atu5204 - aldehyde dehydrogenase, at 201,811 to 203,265 Atu5204 Atu5205: Atu5205 - hypothetical protein, at 203,504 to 204,022 Atu5205 Atu5206: Atu5206 - LysR family transcriptional regulator, at 204,297 to 205,196 Atu5206 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2 3at 202.599 kb on + strand, within Atu5204at 202.607 kb on - strand, within Atu5204at 202.637 kb on - strand, within Atu5204at 202.643 kb on + strand, within Atu5204at 202.648 kb on + strand, within Atu5204at 202.661 kb on - strand, within Atu5204at 202.675 kb on - strand, within Atu5204at 202.678 kb on + strand, within Atu5204at 202.694 kb on - strand, within Atu5204at 202.780 kb on - strand, within Atu5204at 202.802 kb on - strand, within Atu5204at 202.815 kb on - strand, within Atu5204at 202.836 kb on + strand, within Atu5204at 202.836 kb on + strand, within Atu5204at 202.844 kb on + strand, within Atu5204at 202.844 kb on - strand, within Atu5204at 202.852 kb on - strand, within Atu5204at 202.852 kb on - strand, within Atu5204at 202.921 kb on - strand, within Atu5204at 203.011 kb on + strand, within Atu5204at 203.107 kb on - strand, within Atu5204at 203.132 kb on + strandat 203.140 kb on - strandat 203.150 kb on + strandat 203.150 kb on + strandat 203.150 kb on + strandat 203.150 kb on + strandat 203.158 kb on - strandat 203.158 kb on - strandat 203.158 kb on - strandat 203.179 kb on + strandat 203.240 kb on + strandat 203.279 kb on + strandat 203.279 kb on + strandat 203.279 kb on + strandat 203.279 kb on + strandat 203.310 kb on - strandat 203.423 kb on + strandat 203.452 kb on + strandat 203.467 kb on + strandat 203.576 kb on - strand, within Atu5205at 203.638 kb on + strand, within Atu5205at 203.643 kb on + strand, within Atu5205at 203.646 kb on - strand, within Atu5205at 203.659 kb on + strand, within Atu5205at 203.659 kb on + strand, within Atu5205at 203.660 kb on + strand, within Atu5205at 203.667 kb on - strand, within Atu5205at 203.667 kb on - strand, within Atu5205at 203.683 kb on + strand, within Atu5205at 203.698 kb on - strand, within Atu5205at 203.702 kb on - strand, within Atu5205at 203.712 kb on + strand, within Atu5205at 203.772 kb on + strand, within Atu5205at 203.825 kb on + strand, within Atu5205at 203.831 kb on - strand, within Atu5205at 203.894 kb on - strand, within Atu5205at 203.894 kb on - strand, within Atu5205at 203.929 kb on + strand, within Atu5205at 203.986 kb on + strandat 204.063 kb on - strandat 204.097 kb on - strandat 204.191 kb on + strandat 204.199 kb on - strandat 204.220 kb on + strandat 204.308 kb on - strandat 204.330 kb on + strandat 204.392 kb on - strand, within Atu5206at 204.425 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.450 kb on + strand, within Atu5206at 204.458 kb on - strand, within Atu5206at 204.529 kb on + strand, within Atu5206at 204.557 kb on + strand, within Atu5206at 204.560 kb on - strand, within Atu5206at 204.596 kb on + strand, within Atu5206at 204.603 kb on + strand, within Atu5206at 204.604 kb on + strand, within Atu5206at 204.604 kb on - strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.641 kb on + strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.649 kb on - strand, within Atu5206at 204.676 kb on + strand, within Atu5206at 204.680 kb on - strand, within Atu5206at 204.694 kb on - strand, within Atu5206at 204.701 kb on + strand, within Atu5206at 204.709 kb on - strand, within Atu5206at 204.847 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.862 kb on + strand, within Atu5206at 204.870 kb on - strand, within Atu5206at 204.870 kb on - strand, within Atu5206at 204.895 kb on + strand, within Atu5206at 204.903 kb on - strand, within Atu5206at 204.903 kb on - strand, within Atu5206at 204.913 kb on - strand, within Atu5206at 204.934 kb on + strand, within Atu5206at 204.935 kb on - strand, within Atu5206at 204.949 kb on + strand, within Atu5206at 204.951 kb on + strand, within Atu5206at 204.951 kb on + strand, within Atu5206at 204.965 kb on + strand, within Atu5206at 204.965 kb on + strand, within Atu5206at 204.968 kb on - strand, within Atu5206at 204.973 kb on - strand, within Atu5206at 204.973 kb on - strand, within Atu5206at 204.976 kb on + strand, within Atu5206at 204.991 kb on - strand, within Atu5206at 205.010 kb on + strand, within Atu5206

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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202,599 + Atu5204 0.54 +0.7
202,607 - Atu5204 0.55 +0.2
202,637 - Atu5204 0.57 -0.5
202,643 + Atu5204 0.57 +0.5
202,648 + Atu5204 0.58 +0.4
202,661 - Atu5204 0.58 +0.7
202,675 - Atu5204 0.59 -0.1
202,678 + Atu5204 0.60 +0.3
202,694 - Atu5204 0.61 +1.0
202,780 - Atu5204 0.67 +0.1
202,802 - Atu5204 0.68 +0.4
202,815 - Atu5204 0.69 +0.7
202,836 + Atu5204 0.70 +0.2
202,836 + Atu5204 0.70 +2.0
202,844 + Atu5204 0.71 +0.7
202,844 - Atu5204 0.71 +0.7
202,852 - Atu5204 0.72 -1.1
202,852 - Atu5204 0.72 +0.6
202,921 - Atu5204 0.76 -0.6
203,011 + Atu5204 0.82 -0.4
203,107 - Atu5204 0.89 -0.5
203,132 + -0.7
203,140 - +0.1
203,150 + +0.7
203,150 + +1.1
203,150 + +0.2
203,150 + +0.3
203,158 - +0.5
203,158 - +0.2
203,158 - -0.2
203,179 + -0.2
203,240 + +0.8
203,279 + -0.4
203,279 + +0.3
203,279 + -0.3
203,279 + -0.1
203,310 - +0.5
203,423 + +0.3
203,452 + +0.2
203,467 + +1.4
203,576 - Atu5205 0.14 +0.3
203,638 + Atu5205 0.26 +1.0
203,643 + Atu5205 0.27 +0.4
203,646 - Atu5205 0.27 -0.2
203,659 + Atu5205 0.30 -0.3
203,659 + Atu5205 0.30 -0.3
203,660 + Atu5205 0.30 -0.5
203,667 - Atu5205 0.31 -0.8
203,667 - Atu5205 0.31 -0.3
203,683 + Atu5205 0.34 +1.7
203,698 - Atu5205 0.37 +0.1
203,702 - Atu5205 0.38 +0.1
203,712 + Atu5205 0.40 -0.6
203,772 + Atu5205 0.52 -0.3
203,825 + Atu5205 0.62 +0.8
203,831 - Atu5205 0.63 +1.7
203,894 - Atu5205 0.75 +0.4
203,894 - Atu5205 0.75 +0.7
203,929 + Atu5205 0.82 -0.0
203,986 + -0.3
204,063 - +0.1
204,097 - -0.3
204,191 + -1.2
204,199 - +0.8
204,220 + +0.1
204,308 - -0.9
204,330 + +0.4
204,392 - Atu5206 0.11 +1.1
204,425 + Atu5206 0.14 -0.1
204,450 + Atu5206 0.17 +0.6
204,450 + Atu5206 0.17 +0.1
204,450 + Atu5206 0.17 -0.2
204,458 - Atu5206 0.18 +0.1
204,529 + Atu5206 0.26 -0.7
204,557 + Atu5206 0.29 -1.3
204,560 - Atu5206 0.29 -0.0
204,596 + Atu5206 0.33 +0.7
204,603 + Atu5206 0.34 -0.4
204,604 + Atu5206 0.34 -0.1
204,604 - Atu5206 0.34 +0.7
204,641 + Atu5206 0.38 -0.1
204,641 + Atu5206 0.38 -0.5
204,641 + Atu5206 0.38 -0.5
204,641 + Atu5206 0.38 +3.3
204,649 - Atu5206 0.39 -0.6
204,649 - Atu5206 0.39 -0.5
204,649 - Atu5206 0.39 -0.0
204,676 + Atu5206 0.42 +0.2
204,680 - Atu5206 0.43 -0.2
204,694 - Atu5206 0.44 -0.1
204,701 + Atu5206 0.45 -0.9
204,709 - Atu5206 0.46 +0.3
204,847 + Atu5206 0.61 +0.8
204,862 + Atu5206 0.63 +0.5
204,862 + Atu5206 0.63 +0.1
204,862 + Atu5206 0.63 +0.4
204,862 + Atu5206 0.63 +0.1
204,870 - Atu5206 0.64 -1.0
204,870 - Atu5206 0.64 -0.1
204,895 + Atu5206 0.66 -0.3
204,903 - Atu5206 0.67 -0.0
204,903 - Atu5206 0.67 +0.1
204,913 - Atu5206 0.68 -0.1
204,934 + Atu5206 0.71 +0.3
204,935 - Atu5206 0.71 +0.8
204,949 + Atu5206 0.72 +0.1
204,951 + Atu5206 0.73 -0.5
204,951 + Atu5206 0.73 +0.8
204,965 + Atu5206 0.74 +0.7
204,965 + Atu5206 0.74 -0.5
204,968 - Atu5206 0.75 +0.2
204,973 - Atu5206 0.75 -1.9
204,973 - Atu5206 0.75 +0.7
204,976 + Atu5206 0.75 +0.3
204,991 - Atu5206 0.77 -0.5
205,010 + Atu5206 0.79 -0.2

Or see this region's nucleotide sequence