Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19020 and AMB_RS19025 overlap by 4 nucleotides AMB_RS19025 and AMB_RS23600 overlap by 11 nucleotides AMB_RS23600 and AMB_RS19035 are separated by 589 nucleotides
AMB_RS19020: AMB_RS19020 - transposase, at 4,130,433 to 4,132,379
_RS19020
AMB_RS19025: AMB_RS19025 - heteromeric transposase endonuclease subunit TnsA, at 4,132,376 to 4,133,059
_RS19025
AMB_RS23600: AMB_RS23600 - hypothetical protein, at 4,133,049 to 4,134,395
_RS23600
AMB_RS19035: AMB_RS19035 - hypothetical protein, at 4,134,985 to 4,135,695
_RS19035
Position (kb) 4133
4134
4135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4132.049 kb on - strand, within AMB_RS19020 at 4132.411 kb on + strand at 4132.411 kb on + strand at 4132.412 kb on - strand at 4132.412 kb on - strand at 4132.704 kb on + strand, within AMB_RS19025 at 4132.767 kb on + strand, within AMB_RS19025 at 4132.767 kb on + strand, within AMB_RS19025 at 4132.809 kb on + strand, within AMB_RS19025 at 4132.810 kb on - strand, within AMB_RS19025 at 4132.833 kb on + strand, within AMB_RS19025 at 4132.833 kb on + strand, within AMB_RS19025 at 4132.833 kb on + strand, within AMB_RS19025 at 4132.833 kb on + strand, within AMB_RS19025 at 4132.833 kb on + strand, within AMB_RS19025 at 4132.833 kb on + strand, within AMB_RS19025 at 4132.834 kb on - strand, within AMB_RS19025 at 4132.834 kb on - strand, within AMB_RS19025 at 4132.834 kb on - strand, within AMB_RS19025 at 4132.834 kb on - strand, within AMB_RS19025 at 4132.863 kb on + strand, within AMB_RS19025 at 4132.863 kb on + strand, within AMB_RS19025 at 4132.864 kb on - strand, within AMB_RS19025 at 4132.864 kb on - strand, within AMB_RS19025 at 4132.864 kb on - strand, within AMB_RS19025 at 4132.979 kb on + strand, within AMB_RS19025 at 4132.979 kb on + strand, within AMB_RS19025 at 4132.979 kb on + strand, within AMB_RS19025 at 4132.979 kb on + strand, within AMB_RS19025 at 4132.980 kb on - strand, within AMB_RS19025 at 4132.980 kb on - strand, within AMB_RS19025 at 4133.003 kb on - strand at 4133.003 kb on - strand at 4133.003 kb on - strand at 4133.003 kb on - strand at 4133.148 kb on + strand at 4133.246 kb on - strand, within AMB_RS23600 at 4133.450 kb on - strand, within AMB_RS23600 at 4133.461 kb on + strand, within AMB_RS23600 at 4133.461 kb on + strand, within AMB_RS23600 at 4133.461 kb on + strand, within AMB_RS23600 at 4133.461 kb on + strand, within AMB_RS23600 at 4133.462 kb on - strand, within AMB_RS23600 at 4133.727 kb on + strand, within AMB_RS23600 at 4133.727 kb on + strand, within AMB_RS23600 at 4133.727 kb on + strand, within AMB_RS23600 at 4133.727 kb on + strand, within AMB_RS23600 at 4133.728 kb on - strand, within AMB_RS23600 at 4133.749 kb on + strand, within AMB_RS23600 at 4133.749 kb on + strand, within AMB_RS23600 at 4133.749 kb on + strand, within AMB_RS23600 at 4133.749 kb on + strand, within AMB_RS23600 at 4133.750 kb on - strand, within AMB_RS23600 at 4133.750 kb on - strand, within AMB_RS23600 at 4133.761 kb on + strand, within AMB_RS23600 at 4134.013 kb on + strand, within AMB_RS23600 at 4134.014 kb on - strand, within AMB_RS23600 at 4134.014 kb on - strand, within AMB_RS23600 at 4134.104 kb on - strand, within AMB_RS23600 at 4134.283 kb on + strand at 4134.283 kb on + strand at 4134.339 kb on + strand at 4134.340 kb on - strand at 4134.433 kb on + strand at 4134.433 kb on + strand at 4134.434 kb on - strand at 4134.521 kb on + strand at 4134.521 kb on + strand at 4134.521 kb on + strand at 4134.521 kb on + strand at 4134.522 kb on - strand at 4134.522 kb on - strand at 4134.522 kb on - strand at 4134.522 kb on - strand at 4134.522 kb on - strand at 4134.523 kb on + strand at 4134.523 kb on + strand at 4134.524 kb on - strand at 4134.689 kb on + strand at 4134.689 kb on + strand at 4134.689 kb on + strand at 4134.710 kb on + strand at 4134.744 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.746 kb on + strand at 4134.747 kb on - strand at 4134.747 kb on - strand at 4134.747 kb on - strand at 4134.789 kb on + strand at 4134.790 kb on - strand at 4134.790 kb on - strand at 4134.843 kb on - strand at 4134.843 kb on - strand at 4134.880 kb on + strand at 4134.880 kb on + strand at 4134.881 kb on - strand at 4134.881 kb on - strand at 4134.912 kb on - strand at 4135.121 kb on + strand, within AMB_RS19035 at 4135.121 kb on + strand, within AMB_RS19035 at 4135.121 kb on + strand, within AMB_RS19035 at 4135.122 kb on - strand, within AMB_RS19035 at 4135.122 kb on - strand, within AMB_RS19035 at 4135.122 kb on - strand, within AMB_RS19035 at 4135.122 kb on - strand, within AMB_RS19035 at 4135.122 kb on - strand, within AMB_RS19035 at 4135.175 kb on + strand, within AMB_RS19035 at 4135.194 kb on + strand, within AMB_RS19035 at 4135.194 kb on + strand, within AMB_RS19035 at 4135.195 kb on - strand, within AMB_RS19035 at 4135.195 kb on - strand, within AMB_RS19035 at 4135.195 kb on - strand, within AMB_RS19035 at 4135.241 kb on + strand, within AMB_RS19035 at 4135.241 kb on + strand, within AMB_RS19035 at 4135.241 kb on + strand, within AMB_RS19035 at 4135.241 kb on + strand, within AMB_RS19035 at 4135.241 kb on + strand, within AMB_RS19035 at 4135.242 kb on - strand, within AMB_RS19035 at 4135.242 kb on - strand, within AMB_RS19035 at 4135.242 kb on - strand, within AMB_RS19035 at 4135.274 kb on + strand, within AMB_RS19035 at 4135.274 kb on + strand, within AMB_RS19035 at 4135.314 kb on + strand, within AMB_RS19035 at 4135.314 kb on + strand, within AMB_RS19035 at 4135.315 kb on - strand, within AMB_RS19035 at 4135.345 kb on + strand, within AMB_RS19035 at 4135.345 kb on + strand, within AMB_RS19035 at 4135.345 kb on + strand, within AMB_RS19035 at 4135.345 kb on + strand, within AMB_RS19035 at 4135.346 kb on - strand, within AMB_RS19035 at 4135.346 kb on - strand, within AMB_RS19035
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 4,132,049 - AMB_RS19020 0.83 -0.4 4,132,411 + +0.3 4,132,411 + -0.3 4,132,412 - -0.7 4,132,412 - -0.2 4,132,704 + AMB_RS19025 0.48 -0.8 4,132,767 + AMB_RS19025 0.57 +0.8 4,132,767 + AMB_RS19025 0.57 -1.9 4,132,809 + AMB_RS19025 0.63 +0.1 4,132,810 - AMB_RS19025 0.63 +0.4 4,132,833 + AMB_RS19025 0.67 +0.0 4,132,833 + AMB_RS19025 0.67 -1.4 4,132,833 + AMB_RS19025 0.67 +0.4 4,132,833 + AMB_RS19025 0.67 +0.2 4,132,833 + AMB_RS19025 0.67 -0.1 4,132,833 + AMB_RS19025 0.67 -0.9 4,132,834 - AMB_RS19025 0.67 -0.7 4,132,834 - AMB_RS19025 0.67 -0.1 4,132,834 - AMB_RS19025 0.67 -1.5 4,132,834 - AMB_RS19025 0.67 +0.2 4,132,863 + AMB_RS19025 0.71 +0.3 4,132,863 + AMB_RS19025 0.71 +0.0 4,132,864 - AMB_RS19025 0.71 +1.7 4,132,864 - AMB_RS19025 0.71 -1.2 4,132,864 - AMB_RS19025 0.71 +0.0 4,132,979 + AMB_RS19025 0.88 -1.3 4,132,979 + AMB_RS19025 0.88 +0.3 4,132,979 + AMB_RS19025 0.88 -0.2 4,132,979 + AMB_RS19025 0.88 -0.2 4,132,980 - AMB_RS19025 0.88 +0.6 4,132,980 - AMB_RS19025 0.88 +0.3 4,133,003 - +0.1 4,133,003 - +0.3 4,133,003 - -0.1 4,133,003 - -0.7 4,133,148 + +0.2 4,133,246 - AMB_RS23600 0.15 -0.1 4,133,450 - AMB_RS23600 0.30 -0.3 4,133,461 + AMB_RS23600 0.31 +0.1 4,133,461 + AMB_RS23600 0.31 +0.2 4,133,461 + AMB_RS23600 0.31 +1.1 4,133,461 + AMB_RS23600 0.31 -0.3 4,133,462 - AMB_RS23600 0.31 -0.6 4,133,727 + AMB_RS23600 0.50 +0.3 4,133,727 + AMB_RS23600 0.50 +0.0 4,133,727 + AMB_RS23600 0.50 +1.0 4,133,727 + AMB_RS23600 0.50 +0.4 4,133,728 - AMB_RS23600 0.50 +0.1 4,133,749 + AMB_RS23600 0.52 -0.3 4,133,749 + AMB_RS23600 0.52 -1.1 4,133,749 + AMB_RS23600 0.52 -0.2 4,133,749 + AMB_RS23600 0.52 -0.1 4,133,750 - AMB_RS23600 0.52 +1.5 4,133,750 - AMB_RS23600 0.52 -0.3 4,133,761 + AMB_RS23600 0.53 -0.6 4,134,013 + AMB_RS23600 0.72 -0.4 4,134,014 - AMB_RS23600 0.72 +0.7 4,134,014 - AMB_RS23600 0.72 +0.1 4,134,104 - AMB_RS23600 0.78 +0.2 4,134,283 + -0.3 4,134,283 + +0.2 4,134,339 + -0.6 4,134,340 - -0.3 4,134,433 + -0.2 4,134,433 + -2.2 4,134,434 - -1.2 4,134,521 + -0.1 4,134,521 + +2.1 4,134,521 + -0.1 4,134,521 + -1.2 4,134,522 - -0.4 4,134,522 - -0.4 4,134,522 - -0.4 4,134,522 - -1.4 4,134,522 - -0.1 4,134,523 + +0.4 4,134,523 + -0.2 4,134,524 - +0.4 4,134,689 + +1.2 4,134,689 + -0.9 4,134,689 + -0.3 4,134,710 + -1.9 4,134,744 + -0.3 4,134,746 + -0.5 4,134,746 + -0.4 4,134,746 + -0.5 4,134,746 + -1.0 4,134,746 + +0.8 4,134,746 + -0.2 4,134,746 + -0.3 4,134,746 + +0.3 4,134,746 + -1.5 4,134,746 + -0.1 4,134,747 - -0.6 4,134,747 - -4.0 4,134,747 - +0.6 4,134,789 + -1.2 4,134,790 - -1.9 4,134,790 - +0.1 4,134,843 - -0.3 4,134,843 - -0.0 4,134,880 + +0.5 4,134,880 + -1.1 4,134,881 - +0.1 4,134,881 - +0.6 4,134,912 - -0.1 4,135,121 + AMB_RS19035 0.19 -3.4 4,135,121 + AMB_RS19035 0.19 +0.7 4,135,121 + AMB_RS19035 0.19 -0.2 4,135,122 - AMB_RS19035 0.19 -0.5 4,135,122 - AMB_RS19035 0.19 -0.7 4,135,122 - AMB_RS19035 0.19 +1.1 4,135,122 - AMB_RS19035 0.19 -0.4 4,135,122 - AMB_RS19035 0.19 +0.5 4,135,175 + AMB_RS19035 0.27 -1.3 4,135,194 + AMB_RS19035 0.29 +0.2 4,135,194 + AMB_RS19035 0.29 -0.0 4,135,195 - AMB_RS19035 0.30 +0.2 4,135,195 - AMB_RS19035 0.30 -0.0 4,135,195 - AMB_RS19035 0.30 -0.6 4,135,241 + AMB_RS19035 0.36 -0.2 4,135,241 + AMB_RS19035 0.36 -0.1 4,135,241 + AMB_RS19035 0.36 -0.8 4,135,241 + AMB_RS19035 0.36 +0.4 4,135,241 + AMB_RS19035 0.36 -0.1 4,135,242 - AMB_RS19035 0.36 +0.3 4,135,242 - AMB_RS19035 0.36 +0.8 4,135,242 - AMB_RS19035 0.36 -0.7 4,135,274 + AMB_RS19035 0.41 -0.8 4,135,274 + AMB_RS19035 0.41 -0.2 4,135,314 + AMB_RS19035 0.46 -1.2 4,135,314 + AMB_RS19035 0.46 -0.3 4,135,315 - AMB_RS19035 0.46 -0.1 4,135,345 + AMB_RS19035 0.51 -1.7 4,135,345 + AMB_RS19035 0.51 +0.5 4,135,345 + AMB_RS19035 0.51 -0.2 4,135,345 + AMB_RS19035 0.51 +0.2 4,135,346 - AMB_RS19035 0.51 -0.9 4,135,346 - AMB_RS19035 0.51 +0.1
Or see this region's nucleotide sequence