Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23165

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04930 and AMB_RS23165 are separated by 87 nucleotidesAMB_RS23165 and AMB_RS04945 are separated by 47 nucleotides AMB_RS04930: AMB_RS04930 - PDZ domain-containing protein, at 1,023,148 to 1,025,334 _RS04930 AMB_RS23165: AMB_RS23165 - hypothetical protein, at 1,025,422 to 1,026,870 _RS23165 AMB_RS04945: AMB_RS04945 - hypothetical protein, at 1,026,918 to 1,027,961 _RS04945 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.566 kb on + strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.567 kb on - strand, within AMB_RS04930at 1024.677 kb on - strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.719 kb on + strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1024.720 kb on - strand, within AMB_RS04930at 1025.214 kb on + strandat 1025.215 kb on - strandat 1025.215 kb on - strandat 1025.215 kb on - strandat 1025.215 kb on - strandat 1025.257 kb on - strandat 1025.358 kb on + strandat 1025.359 kb on - strandat 1025.508 kb on + strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.509 kb on - strandat 1025.742 kb on + strand, within AMB_RS23165at 1026.493 kb on - strand, within AMB_RS23165at 1026.705 kb on + strand, within AMB_RS23165at 1026.705 kb on + strand, within AMB_RS23165at 1026.706 kb on - strand, within AMB_RS23165at 1026.706 kb on - strand, within AMB_RS23165at 1026.799 kb on - strandat 1026.894 kb on + strandat 1026.894 kb on + strandat 1026.895 kb on - strandat 1026.895 kb on - strandat 1026.983 kb on + strandat 1026.983 kb on + strandat 1026.983 kb on + strandat 1027.080 kb on + strand, within AMB_RS04945at 1027.080 kb on + strand, within AMB_RS04945at 1027.080 kb on + strand, within AMB_RS04945at 1027.080 kb on + strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.081 kb on - strand, within AMB_RS04945at 1027.116 kb on + strand, within AMB_RS04945at 1027.116 kb on + strand, within AMB_RS04945at 1027.117 kb on - strand, within AMB_RS04945at 1027.117 kb on - strand, within AMB_RS04945at 1027.117 kb on - strand, within AMB_RS04945at 1027.325 kb on + strand, within AMB_RS04945at 1027.333 kb on + strand, within AMB_RS04945at 1027.333 kb on + strand, within AMB_RS04945at 1027.334 kb on - strand, within AMB_RS04945at 1027.334 kb on - strand, within AMB_RS04945at 1027.421 kb on + strand, within AMB_RS04945at 1027.421 kb on + strand, within AMB_RS04945at 1027.422 kb on - strand, within AMB_RS04945at 1027.422 kb on - strand, within AMB_RS04945at 1027.422 kb on - strand, within AMB_RS04945at 1027.422 kb on - strand, within AMB_RS04945at 1027.466 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.488 kb on + strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.489 kb on - strand, within AMB_RS04945at 1027.700 kb on + strand, within AMB_RS04945at 1027.744 kb on - strand, within AMB_RS04945at 1027.813 kb on - strand, within AMB_RS04945at 1027.813 kb on - strand, within AMB_RS04945at 1027.813 kb on - strand, within AMB_RS04945at 1027.813 kb on - strand, within AMB_RS04945at 1027.813 kb on - strand, within AMB_RS04945at 1027.813 kb on - strand, within AMB_RS04945

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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1,024,566 + AMB_RS04930 0.65 -3.9
1,024,566 + AMB_RS04930 0.65 -3.5
1,024,566 + AMB_RS04930 0.65 -1.2
1,024,566 + AMB_RS04930 0.65 -3.5
1,024,566 + AMB_RS04930 0.65 -2.7
1,024,566 + AMB_RS04930 0.65 -2.5
1,024,566 + AMB_RS04930 0.65 -3.4
1,024,567 - AMB_RS04930 0.65 -4.1
1,024,567 - AMB_RS04930 0.65 -3.3
1,024,567 - AMB_RS04930 0.65 -4.0
1,024,567 - AMB_RS04930 0.65 -2.1
1,024,567 - AMB_RS04930 0.65 -2.9
1,024,567 - AMB_RS04930 0.65 -2.5
1,024,567 - AMB_RS04930 0.65 -3.3
1,024,677 - AMB_RS04930 0.70 -3.6
1,024,719 + AMB_RS04930 0.72 -1.6
1,024,719 + AMB_RS04930 0.72 -3.3
1,024,719 + AMB_RS04930 0.72 -2.6
1,024,719 + AMB_RS04930 0.72 -4.0
1,024,720 - AMB_RS04930 0.72 -5.6
1,024,720 - AMB_RS04930 0.72 -3.9
1,024,720 - AMB_RS04930 0.72 -3.1
1,024,720 - AMB_RS04930 0.72 -3.7
1,024,720 - AMB_RS04930 0.72 -3.4
1,025,214 + -1.6
1,025,215 - -1.3
1,025,215 - -2.0
1,025,215 - -4.4
1,025,215 - -1.7
1,025,257 - -3.5
1,025,358 + -2.2
1,025,359 - -5.2
1,025,508 + -0.6
1,025,509 - -5.4
1,025,509 - -3.5
1,025,509 - -3.7
1,025,509 - -4.8
1,025,509 - -2.2
1,025,742 + AMB_RS23165 0.22 -5.4
1,026,493 - AMB_RS23165 0.74 -3.7
1,026,705 + AMB_RS23165 0.89 +0.6
1,026,705 + AMB_RS23165 0.89 -0.3
1,026,706 - AMB_RS23165 0.89 -0.4
1,026,706 - AMB_RS23165 0.89 -4.2
1,026,799 - -4.7
1,026,894 + -0.2
1,026,894 + -0.2
1,026,895 - -3.0
1,026,895 - -3.2
1,026,983 + -4.3
1,026,983 + -3.1
1,026,983 + -4.3
1,027,080 + AMB_RS04945 0.16 -2.3
1,027,080 + AMB_RS04945 0.16 -2.4
1,027,080 + AMB_RS04945 0.16 -2.4
1,027,080 + AMB_RS04945 0.16 -2.0
1,027,081 - AMB_RS04945 0.16 -2.2
1,027,081 - AMB_RS04945 0.16 -2.8
1,027,081 - AMB_RS04945 0.16 -1.2
1,027,081 - AMB_RS04945 0.16 -1.4
1,027,081 - AMB_RS04945 0.16 -2.6
1,027,081 - AMB_RS04945 0.16 -4.1
1,027,081 - AMB_RS04945 0.16 -2.7
1,027,116 + AMB_RS04945 0.19 -4.5
1,027,116 + AMB_RS04945 0.19 -3.8
1,027,117 - AMB_RS04945 0.19 -4.1
1,027,117 - AMB_RS04945 0.19 -3.1
1,027,117 - AMB_RS04945 0.19 -4.3
1,027,325 + AMB_RS04945 0.39 -1.9
1,027,333 + AMB_RS04945 0.40 -0.9
1,027,333 + AMB_RS04945 0.40 -5.1
1,027,334 - AMB_RS04945 0.40 -3.6
1,027,334 - AMB_RS04945 0.40 -2.9
1,027,421 + AMB_RS04945 0.48 -4.1
1,027,421 + AMB_RS04945 0.48 -4.8
1,027,422 - AMB_RS04945 0.48 -2.2
1,027,422 - AMB_RS04945 0.48 -3.4
1,027,422 - AMB_RS04945 0.48 -2.7
1,027,422 - AMB_RS04945 0.48 -3.5
1,027,466 + AMB_RS04945 0.52 -4.6
1,027,488 + AMB_RS04945 0.55 -3.7
1,027,488 + AMB_RS04945 0.55 -2.7
1,027,488 + AMB_RS04945 0.55 -2.7
1,027,488 + AMB_RS04945 0.55 -3.4
1,027,488 + AMB_RS04945 0.55 -2.4
1,027,488 + AMB_RS04945 0.55 -3.6
1,027,488 + AMB_RS04945 0.55 -3.7
1,027,488 + AMB_RS04945 0.55 -3.1
1,027,488 + AMB_RS04945 0.55 -3.2
1,027,488 + AMB_RS04945 0.55 -3.4
1,027,488 + AMB_RS04945 0.55 -2.1
1,027,488 + AMB_RS04945 0.55 -2.2
1,027,488 + AMB_RS04945 0.55 -3.1
1,027,488 + AMB_RS04945 0.55 -4.0
1,027,488 + AMB_RS04945 0.55 -2.6
1,027,488 + AMB_RS04945 0.55 -4.8
1,027,488 + AMB_RS04945 0.55 -1.5
1,027,488 + AMB_RS04945 0.55 -2.9
1,027,488 + AMB_RS04945 0.55 -2.7
1,027,488 + AMB_RS04945 0.55 -3.8
1,027,489 - AMB_RS04945 0.55 -3.8
1,027,489 - AMB_RS04945 0.55 -2.3
1,027,489 - AMB_RS04945 0.55 -5.8
1,027,489 - AMB_RS04945 0.55 -3.6
1,027,489 - AMB_RS04945 0.55 -4.5
1,027,489 - AMB_RS04945 0.55 -2.4
1,027,489 - AMB_RS04945 0.55 -2.7
1,027,489 - AMB_RS04945 0.55 -3.7
1,027,489 - AMB_RS04945 0.55 -3.4
1,027,489 - AMB_RS04945 0.55 -4.4
1,027,489 - AMB_RS04945 0.55 -2.5
1,027,489 - AMB_RS04945 0.55 -3.6
1,027,489 - AMB_RS04945 0.55 -3.4
1,027,489 - AMB_RS04945 0.55 -2.6
1,027,489 - AMB_RS04945 0.55 -3.9
1,027,489 - AMB_RS04945 0.55 -4.1
1,027,489 - AMB_RS04945 0.55 -0.9
1,027,489 - AMB_RS04945 0.55 -4.0
1,027,489 - AMB_RS04945 0.55 -0.2
1,027,489 - AMB_RS04945 0.55 -3.7
1,027,489 - AMB_RS04945 0.55 -0.9
1,027,489 - AMB_RS04945 0.55 -2.5
1,027,489 - AMB_RS04945 0.55 -4.0
1,027,489 - AMB_RS04945 0.55 -3.7
1,027,489 - AMB_RS04945 0.55 -4.0
1,027,489 - AMB_RS04945 0.55 -4.7
1,027,700 + AMB_RS04945 0.75 -1.1
1,027,744 - AMB_RS04945 0.79 -3.1
1,027,813 - AMB_RS04945 0.86 -4.0
1,027,813 - AMB_RS04945 0.86 -3.5
1,027,813 - AMB_RS04945 0.86 -3.2
1,027,813 - AMB_RS04945 0.86 -3.7
1,027,813 - AMB_RS04945 0.86 -3.1
1,027,813 - AMB_RS04945 0.86 -3.4

Or see this region's nucleotide sequence