Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22905

Experiment: 150_mag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22895 and AMB_RS22900 are separated by 212 nucleotidesAMB_RS22900 and AMB_RS22905 are separated by 84 nucleotidesAMB_RS22905 and AMB_RS22910 are separated by 92 nucleotidesAMB_RS22910 and AMB_RS22915 are separated by 100 nucleotides AMB_RS22895: AMB_RS22895 - hypothetical protein, at 4,939,425 to 4,939,961 _RS22895 AMB_RS22900: AMB_RS22900 - hypothetical protein, at 4,940,174 to 4,940,380 _RS22900 AMB_RS22905: AMB_RS22905 - ATPase, at 4,940,465 to 4,941,076 _RS22905 AMB_RS22910: AMB_RS22910 - hypothetical protein, at 4,941,169 to 4,941,825 _RS22910 AMB_RS22915: AMB_RS22915 - histidine triad nucleotide-binding protein, at 4,941,926 to 4,942,294 _RS22915 Position (kb) 4940 4941 4942Strain fitness (log2 ratio) -1 0 1 2at 4939.592 kb on - strand, within AMB_RS22895at 4939.594 kb on + strand, within AMB_RS22895at 4939.594 kb on + strand, within AMB_RS22895at 4939.595 kb on - strand, within AMB_RS22895at 4939.621 kb on + strand, within AMB_RS22895at 4939.621 kb on + strand, within AMB_RS22895at 4939.621 kb on + strand, within AMB_RS22895at 4939.621 kb on + strand, within AMB_RS22895at 4939.621 kb on + strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.622 kb on - strand, within AMB_RS22895at 4939.657 kb on + strand, within AMB_RS22895at 4939.657 kb on + strand, within AMB_RS22895at 4939.657 kb on + strand, within AMB_RS22895at 4939.658 kb on - strand, within AMB_RS22895at 4939.658 kb on - strand, within AMB_RS22895at 4939.658 kb on - strand, within AMB_RS22895at 4939.658 kb on - strand, within AMB_RS22895at 4940.463 kb on + strandat 4940.558 kb on + strand, within AMB_RS22905at 4940.559 kb on - strand, within AMB_RS22905at 4941.044 kb on + strandat 4941.347 kb on - strand, within AMB_RS22910at 4941.347 kb on - strand, within AMB_RS22910at 4941.347 kb on - strand, within AMB_RS22910at 4941.347 kb on - strand, within AMB_RS22910at 4941.347 kb on - strand, within AMB_RS22910at 4941.491 kb on - strand, within AMB_RS22910at 4941.502 kb on + strand, within AMB_RS22910at 4941.590 kb on + strand, within AMB_RS22910at 4941.591 kb on - strand, within AMB_RS22910at 4941.623 kb on - strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.679 kb on + strand, within AMB_RS22910at 4941.680 kb on - strand, within AMB_RS22910at 4941.681 kb on + strand, within AMB_RS22910at 4941.775 kb on - strandat 4941.775 kb on - strandat 4941.775 kb on - strandat 4941.824 kb on - strandat 4941.885 kb on + strandat 4941.886 kb on - strandat 4941.886 kb on - strandat 4941.886 kb on - strandat 4941.923 kb on - strandat 4941.923 kb on - strandat 4942.021 kb on + strand, within AMB_RS22915at 4942.022 kb on - strand, within AMB_RS22915

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
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4,939,592 - AMB_RS22895 0.31 +0.9
4,939,594 + AMB_RS22895 0.31 -0.7
4,939,594 + AMB_RS22895 0.31 +0.1
4,939,595 - AMB_RS22895 0.32 +1.1
4,939,621 + AMB_RS22895 0.36 -0.4
4,939,621 + AMB_RS22895 0.36 -0.7
4,939,621 + AMB_RS22895 0.36 -0.2
4,939,621 + AMB_RS22895 0.36 +0.6
4,939,621 + AMB_RS22895 0.36 +0.6
4,939,622 - AMB_RS22895 0.37 -0.2
4,939,622 - AMB_RS22895 0.37 -0.4
4,939,622 - AMB_RS22895 0.37 -0.5
4,939,622 - AMB_RS22895 0.37 +2.2
4,939,622 - AMB_RS22895 0.37 -1.0
4,939,622 - AMB_RS22895 0.37 +0.5
4,939,622 - AMB_RS22895 0.37 +0.1
4,939,657 + AMB_RS22895 0.43 -0.3
4,939,657 + AMB_RS22895 0.43 -0.6
4,939,657 + AMB_RS22895 0.43 +0.3
4,939,658 - AMB_RS22895 0.43 -0.7
4,939,658 - AMB_RS22895 0.43 -0.7
4,939,658 - AMB_RS22895 0.43 -0.3
4,939,658 - AMB_RS22895 0.43 -0.7
4,940,463 + +0.1
4,940,558 + AMB_RS22905 0.15 +0.4
4,940,559 - AMB_RS22905 0.15 +0.1
4,941,044 + +0.3
4,941,347 - AMB_RS22910 0.27 +1.4
4,941,347 - AMB_RS22910 0.27 -0.6
4,941,347 - AMB_RS22910 0.27 -0.5
4,941,347 - AMB_RS22910 0.27 -0.0
4,941,347 - AMB_RS22910 0.27 +0.4
4,941,491 - AMB_RS22910 0.49 -0.5
4,941,502 + AMB_RS22910 0.51 +0.1
4,941,590 + AMB_RS22910 0.64 -0.2
4,941,591 - AMB_RS22910 0.64 -0.8
4,941,623 - AMB_RS22910 0.69 -0.6
4,941,679 + AMB_RS22910 0.78 -0.2
4,941,679 + AMB_RS22910 0.78 +1.7
4,941,679 + AMB_RS22910 0.78 -0.3
4,941,679 + AMB_RS22910 0.78 +1.0
4,941,679 + AMB_RS22910 0.78 -0.5
4,941,679 + AMB_RS22910 0.78 +0.7
4,941,679 + AMB_RS22910 0.78 +0.0
4,941,679 + AMB_RS22910 0.78 +0.5
4,941,679 + AMB_RS22910 0.78 -0.9
4,941,680 - AMB_RS22910 0.78 +0.2
4,941,681 + AMB_RS22910 0.78 -0.9
4,941,775 - -0.2
4,941,775 - +0.1
4,941,775 - +0.2
4,941,824 - +0.2
4,941,885 + -0.7
4,941,886 - +1.3
4,941,886 - -0.1
4,941,886 - -0.9
4,941,923 - -0.2
4,941,923 - -1.2
4,942,021 + AMB_RS22915 0.26 -0.3
4,942,022 - AMB_RS22915 0.26 -0.9

Or see this region's nucleotide sequence