Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21100 and AMB_RS21105 overlap by 58 nucleotides AMB_RS21105 and AMB_RS21110 overlap by 4 nucleotides AMB_RS21110 and AMB_RS21115 are separated by 72 nucleotides AMB_RS21115 and AMB_RS21120 are separated by 6 nucleotides
AMB_RS21100: AMB_RS21100 - histidinol-phosphatase, at 4,585,103 to 4,585,879
_RS21100
AMB_RS21105: AMB_RS21105 - endonuclease III, at 4,585,822 to 4,586,511
_RS21105
AMB_RS21110: AMB_RS21110 - hemerythrin, at 4,586,508 to 4,586,924
_RS21110
AMB_RS21115: AMB_RS21115 - membrane-bound metal-dependent hydrolase, at 4,586,997 to 4,587,491
_RS21115
AMB_RS21120: AMB_RS21120 - DUF4337 domain-containing protein, at 4,587,498 to 4,588,103
_RS21120
Position (kb) 4586
4587 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.903 kb on + strand, within AMB_RS21105 at 4585.904 kb on - strand, within AMB_RS21105 at 4585.951 kb on + strand, within AMB_RS21105 at 4585.952 kb on - strand, within AMB_RS21105 at 4585.963 kb on + strand, within AMB_RS21105 at 4585.964 kb on - strand, within AMB_RS21105 at 4585.964 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.120 kb on - strand, within AMB_RS21105 at 4586.186 kb on + strand, within AMB_RS21105 at 4586.186 kb on + strand, within AMB_RS21105 at 4586.186 kb on + strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.187 kb on - strand, within AMB_RS21105 at 4586.428 kb on + strand, within AMB_RS21105 at 4586.429 kb on - strand, within AMB_RS21105 at 4586.430 kb on + strand, within AMB_RS21105 at 4586.430 kb on + strand, within AMB_RS21105 at 4586.431 kb on - strand, within AMB_RS21105 at 4586.431 kb on - strand, within AMB_RS21105 at 4586.519 kb on - strand at 4586.533 kb on + strand at 4586.534 kb on - strand at 4586.534 kb on - strand at 4587.007 kb on + strand at 4587.008 kb on - strand at 4587.008 kb on - strand at 4587.008 kb on - strand at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.124 kb on + strand, within AMB_RS21115 at 4587.125 kb on - strand, within AMB_RS21115 at 4587.125 kb on - strand, within AMB_RS21115 at 4587.125 kb on - strand, within AMB_RS21115 at 4587.125 kb on - strand, within AMB_RS21115 at 4587.125 kb on - strand, within AMB_RS21115 at 4587.306 kb on + strand, within AMB_RS21115 at 4587.307 kb on - strand, within AMB_RS21115 at 4587.307 kb on - strand, within AMB_RS21115 at 4587.307 kb on - strand, within AMB_RS21115 at 4587.307 kb on - strand, within AMB_RS21115 at 4587.500 kb on - strand at 4587.500 kb on - strand at 4587.509 kb on + strand at 4587.510 kb on - strand at 4587.653 kb on - strand, within AMB_RS21120 at 4587.667 kb on + strand, within AMB_RS21120 at 4587.667 kb on + strand, within AMB_RS21120 at 4587.668 kb on - strand, within AMB_RS21120 at 4587.870 kb on - strand, within AMB_RS21120 at 4587.883 kb on + strand, within AMB_RS21120 at 4587.883 kb on + strand, within AMB_RS21120 at 4587.883 kb on + strand, within AMB_RS21120 at 4587.884 kb on - strand, within AMB_RS21120 at 4587.884 kb on - strand, within AMB_RS21120
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 4,585,903 + AMB_RS21105 0.12 -0.8 4,585,903 + AMB_RS21105 0.12 -0.9 4,585,903 + AMB_RS21105 0.12 -0.5 4,585,903 + AMB_RS21105 0.12 +0.1 4,585,904 - AMB_RS21105 0.12 -0.3 4,585,951 + AMB_RS21105 0.19 -0.4 4,585,952 - AMB_RS21105 0.19 -0.2 4,585,963 + AMB_RS21105 0.20 -0.3 4,585,964 - AMB_RS21105 0.21 -0.5 4,585,964 - AMB_RS21105 0.21 +1.1 4,586,120 - AMB_RS21105 0.43 -0.1 4,586,120 - AMB_RS21105 0.43 -1.5 4,586,120 - AMB_RS21105 0.43 +1.1 4,586,120 - AMB_RS21105 0.43 -0.5 4,586,186 + AMB_RS21105 0.53 -0.1 4,586,186 + AMB_RS21105 0.53 -0.6 4,586,186 + AMB_RS21105 0.53 +0.1 4,586,187 - AMB_RS21105 0.53 +0.4 4,586,187 - AMB_RS21105 0.53 -0.7 4,586,187 - AMB_RS21105 0.53 +0.7 4,586,187 - AMB_RS21105 0.53 -0.1 4,586,428 + AMB_RS21105 0.88 -0.8 4,586,429 - AMB_RS21105 0.88 -0.3 4,586,430 + AMB_RS21105 0.88 -1.0 4,586,430 + AMB_RS21105 0.88 -0.8 4,586,431 - AMB_RS21105 0.88 +0.8 4,586,431 - AMB_RS21105 0.88 +0.4 4,586,519 - +0.2 4,586,533 + -1.9 4,586,534 - +0.6 4,586,534 - -0.0 4,587,007 + -0.1 4,587,008 - +1.1 4,587,008 - -0.9 4,587,008 - -1.5 4,587,124 + AMB_RS21115 0.26 -0.1 4,587,124 + AMB_RS21115 0.26 +0.3 4,587,124 + AMB_RS21115 0.26 -0.8 4,587,124 + AMB_RS21115 0.26 -2.4 4,587,124 + AMB_RS21115 0.26 -0.5 4,587,124 + AMB_RS21115 0.26 -2.8 4,587,124 + AMB_RS21115 0.26 -0.8 4,587,124 + AMB_RS21115 0.26 -0.7 4,587,125 - AMB_RS21115 0.26 -1.0 4,587,125 - AMB_RS21115 0.26 +0.4 4,587,125 - AMB_RS21115 0.26 -0.7 4,587,125 - AMB_RS21115 0.26 -0.2 4,587,125 - AMB_RS21115 0.26 -0.2 4,587,306 + AMB_RS21115 0.62 +0.8 4,587,307 - AMB_RS21115 0.63 -0.3 4,587,307 - AMB_RS21115 0.63 +0.4 4,587,307 - AMB_RS21115 0.63 -0.2 4,587,307 - AMB_RS21115 0.63 -0.9 4,587,500 - -0.3 4,587,500 - +0.4 4,587,509 + -0.7 4,587,510 - -1.2 4,587,653 - AMB_RS21120 0.26 -0.3 4,587,667 + AMB_RS21120 0.28 -0.6 4,587,667 + AMB_RS21120 0.28 +0.3 4,587,668 - AMB_RS21120 0.28 -0.6 4,587,870 - AMB_RS21120 0.61 -0.5 4,587,883 + AMB_RS21120 0.64 +1.1 4,587,883 + AMB_RS21120 0.64 -0.3 4,587,883 + AMB_RS21120 0.64 +0.1 4,587,884 - AMB_RS21120 0.64 +1.1 4,587,884 - AMB_RS21120 0.64 +0.2
Or see this region's nucleotide sequence