Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20625

Experiment: 150_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20610 and AMB_RS20615 are separated by 141 nucleotidesAMB_RS20615 and AMB_RS20620 are separated by 31 nucleotidesAMB_RS20620 and AMB_RS20625 are separated by 76 nucleotidesAMB_RS20625 and AMB_RS20630 overlap by 4 nucleotides AMB_RS20610: AMB_RS20610 - methyl-accepting chemotaxis protein, at 4,478,388 to 4,480,592 _RS20610 AMB_RS20615: AMB_RS20615 - 50S ribosomal protein L21, at 4,480,734 to 4,481,036 _RS20615 AMB_RS20620: AMB_RS20620 - 50S ribosomal protein L27, at 4,481,068 to 4,481,337 _RS20620 AMB_RS20625: AMB_RS20625 - GTPase ObgE, at 4,481,414 to 4,482,652 _RS20625 AMB_RS20630: AMB_RS20630 - glutamate 5-kinase, at 4,482,649 to 4,483,761 _RS20630 Position (kb) 4481 4482 4483Strain fitness (log2 ratio) -1 0 1at 4481.407 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
remove
4,481,407 + +0.2

Or see this region's nucleotide sequence