Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19415 and AMB_RS19420 are separated by 123 nucleotides AMB_RS19420 and AMB_RS19425 are separated by 16 nucleotides AMB_RS19425 and AMB_RS19430 are separated by 879 nucleotides
AMB_RS19415: AMB_RS19415 - hypothetical protein, at 4,234,873 to 4,235,865
_RS19415
AMB_RS19420: AMB_RS19420 - hemerythrin, at 4,235,989 to 4,236,423
_RS19420
AMB_RS19425: AMB_RS19425 - hypothetical protein, at 4,236,440 to 4,237,171
_RS19425
AMB_RS19430: AMB_RS19430 - transcriptional regulator MraZ, at 4,238,051 to 4,238,512
_RS19430
Position (kb) 4236
4237
4238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4235.891 kb on + strand at 4235.892 kb on - strand at 4235.892 kb on - strand at 4235.930 kb on + strand at 4235.930 kb on + strand at 4235.930 kb on + strand at 4235.931 kb on - strand at 4235.937 kb on + strand at 4235.937 kb on + strand at 4235.938 kb on - strand at 4235.944 kb on + strand at 4235.944 kb on + strand at 4235.945 kb on - strand at 4235.945 kb on - strand at 4235.949 kb on + strand at 4235.949 kb on + strand at 4235.950 kb on - strand at 4235.950 kb on - strand at 4235.950 kb on - strand at 4235.950 kb on - strand at 4235.951 kb on + strand at 4235.952 kb on - strand at 4235.952 kb on - strand at 4236.182 kb on + strand, within AMB_RS19420 at 4236.272 kb on - strand, within AMB_RS19420 at 4236.352 kb on - strand, within AMB_RS19420 at 4236.357 kb on + strand, within AMB_RS19420 at 4236.358 kb on - strand, within AMB_RS19420 at 4236.358 kb on - strand, within AMB_RS19420 at 4236.364 kb on + strand, within AMB_RS19420 at 4236.364 kb on + strand, within AMB_RS19420 at 4236.364 kb on + strand, within AMB_RS19420 at 4236.365 kb on - strand, within AMB_RS19420 at 4236.365 kb on - strand, within AMB_RS19420 at 4236.404 kb on + strand at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.884 kb on + strand, within AMB_RS19425 at 4236.885 kb on - strand, within AMB_RS19425 at 4236.885 kb on - strand, within AMB_RS19425 at 4236.885 kb on - strand, within AMB_RS19425 at 4236.943 kb on + strand, within AMB_RS19425 at 4236.943 kb on + strand, within AMB_RS19425 at 4236.944 kb on - strand, within AMB_RS19425 at 4236.944 kb on - strand, within AMB_RS19425 at 4236.973 kb on + strand, within AMB_RS19425 at 4236.974 kb on - strand, within AMB_RS19425 at 4236.998 kb on + strand, within AMB_RS19425 at 4236.998 kb on + strand, within AMB_RS19425 at 4236.998 kb on + strand, within AMB_RS19425 at 4236.998 kb on + strand, within AMB_RS19425 at 4236.998 kb on + strand, within AMB_RS19425 at 4236.999 kb on - strand, within AMB_RS19425 at 4236.999 kb on - strand, within AMB_RS19425 at 4236.999 kb on - strand, within AMB_RS19425 at 4237.173 kb on + strand at 4237.200 kb on + strand at 4237.259 kb on + strand at 4237.259 kb on + strand at 4237.260 kb on - strand at 4237.891 kb on + strand at 4237.891 kb on + strand at 4237.914 kb on + strand at 4237.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 4,235,891 + -0.4 4,235,892 - -0.5 4,235,892 - -0.9 4,235,930 + -0.7 4,235,930 + -1.1 4,235,930 + +0.3 4,235,931 - +0.1 4,235,937 + +1.0 4,235,937 + +0.0 4,235,938 - -0.6 4,235,944 + -0.4 4,235,944 + -0.3 4,235,945 - -0.6 4,235,945 - -0.6 4,235,949 + -0.2 4,235,949 + -0.2 4,235,950 - -0.3 4,235,950 - -0.1 4,235,950 - +0.2 4,235,950 - -0.3 4,235,951 + -0.1 4,235,952 - +0.2 4,235,952 - -0.5 4,236,182 + AMB_RS19420 0.44 -0.2 4,236,272 - AMB_RS19420 0.65 -0.3 4,236,352 - AMB_RS19420 0.83 -0.5 4,236,357 + AMB_RS19420 0.85 -1.5 4,236,358 - AMB_RS19420 0.85 +0.2 4,236,358 - AMB_RS19420 0.85 -0.7 4,236,364 + AMB_RS19420 0.86 -0.2 4,236,364 + AMB_RS19420 0.86 -0.6 4,236,364 + AMB_RS19420 0.86 -1.2 4,236,365 - AMB_RS19420 0.86 -0.5 4,236,365 - AMB_RS19420 0.86 +0.1 4,236,404 + -3.6 4,236,630 + AMB_RS19425 0.26 -0.2 4,236,630 + AMB_RS19425 0.26 +2.1 4,236,630 + AMB_RS19425 0.26 -2.2 4,236,630 + AMB_RS19425 0.26 -1.4 4,236,630 + AMB_RS19425 0.26 -0.4 4,236,630 + AMB_RS19425 0.26 +0.2 4,236,630 + AMB_RS19425 0.26 +0.9 4,236,630 + AMB_RS19425 0.26 -1.0 4,236,631 - AMB_RS19425 0.26 -0.3 4,236,631 - AMB_RS19425 0.26 -0.0 4,236,631 - AMB_RS19425 0.26 -2.5 4,236,631 - AMB_RS19425 0.26 -1.6 4,236,884 + AMB_RS19425 0.61 -0.3 4,236,885 - AMB_RS19425 0.61 +0.4 4,236,885 - AMB_RS19425 0.61 -0.6 4,236,885 - AMB_RS19425 0.61 +0.9 4,236,943 + AMB_RS19425 0.69 -0.6 4,236,943 + AMB_RS19425 0.69 -0.2 4,236,944 - AMB_RS19425 0.69 -0.3 4,236,944 - AMB_RS19425 0.69 -1.6 4,236,973 + AMB_RS19425 0.73 -0.1 4,236,974 - AMB_RS19425 0.73 -1.5 4,236,998 + AMB_RS19425 0.76 +1.1 4,236,998 + AMB_RS19425 0.76 -0.1 4,236,998 + AMB_RS19425 0.76 +0.5 4,236,998 + AMB_RS19425 0.76 -2.9 4,236,998 + AMB_RS19425 0.76 +0.2 4,236,999 - AMB_RS19425 0.76 -0.0 4,236,999 - AMB_RS19425 0.76 +0.3 4,236,999 - AMB_RS19425 0.76 +0.1 4,237,173 + -1.1 4,237,200 + -0.3 4,237,259 + -0.3 4,237,259 + +0.2 4,237,260 - -0.9 4,237,891 + -0.9 4,237,891 + +0.8 4,237,914 + -2.2 4,237,914 + -0.7
Or see this region's nucleotide sequence