Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19410 and AMB_RS19415 are separated by 82 nucleotides AMB_RS19415 and AMB_RS19420 are separated by 123 nucleotides AMB_RS19420 and AMB_RS19425 are separated by 16 nucleotides
AMB_RS19410: AMB_RS19410 - Kef-type K+ transporter NAD-binding protein, at 4,233,606 to 4,234,790
_RS19410
AMB_RS19415: AMB_RS19415 - hypothetical protein, at 4,234,873 to 4,235,865
_RS19415
AMB_RS19420: AMB_RS19420 - hemerythrin, at 4,235,989 to 4,236,423
_RS19420
AMB_RS19425: AMB_RS19425 - hypothetical protein, at 4,236,440 to 4,237,171
_RS19425
Position (kb) 4234
4235
4236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.901 kb on + strand, within AMB_RS19410 at 4233.902 kb on - strand, within AMB_RS19410 at 4233.902 kb on - strand, within AMB_RS19410 at 4233.902 kb on - strand, within AMB_RS19410 at 4234.020 kb on + strand, within AMB_RS19410 at 4234.021 kb on - strand, within AMB_RS19410 at 4234.021 kb on - strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.273 kb on + strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.274 kb on - strand, within AMB_RS19410 at 4234.385 kb on - strand, within AMB_RS19410 at 4234.516 kb on + strand, within AMB_RS19410 at 4234.516 kb on + strand, within AMB_RS19410 at 4234.517 kb on - strand, within AMB_RS19410 at 4234.517 kb on - strand, within AMB_RS19410 at 4234.517 kb on - strand, within AMB_RS19410 at 4234.588 kb on + strand, within AMB_RS19410 at 4234.588 kb on + strand, within AMB_RS19410 at 4234.588 kb on + strand, within AMB_RS19410 at 4234.588 kb on + strand, within AMB_RS19410 at 4234.588 kb on + strand, within AMB_RS19410 at 4234.589 kb on - strand, within AMB_RS19410 at 4234.589 kb on - strand, within AMB_RS19410 at 4234.589 kb on - strand, within AMB_RS19410 at 4234.589 kb on - strand, within AMB_RS19410 at 4234.589 kb on - strand, within AMB_RS19410 at 4234.589 kb on - strand, within AMB_RS19410 at 4234.775 kb on - strand at 4234.813 kb on + strand at 4234.813 kb on + strand at 4234.814 kb on - strand at 4234.814 kb on - strand at 4234.814 kb on - strand at 4234.814 kb on - strand at 4234.816 kb on + strand at 4234.816 kb on + strand at 4234.816 kb on + strand at 4234.816 kb on + strand at 4234.816 kb on + strand at 4234.816 kb on + strand at 4234.816 kb on + strand at 4234.817 kb on - strand at 4234.817 kb on - strand at 4234.817 kb on - strand at 4234.817 kb on - strand at 4234.817 kb on - strand at 4234.818 kb on + strand at 4234.819 kb on - strand at 4234.916 kb on + strand at 4234.916 kb on + strand at 4234.916 kb on + strand at 4234.916 kb on + strand at 4234.916 kb on + strand at 4234.917 kb on - strand at 4234.997 kb on + strand, within AMB_RS19415 at 4234.997 kb on + strand, within AMB_RS19415 at 4234.997 kb on + strand, within AMB_RS19415 at 4234.997 kb on + strand, within AMB_RS19415 at 4234.997 kb on + strand, within AMB_RS19415 at 4235.069 kb on + strand, within AMB_RS19415 at 4235.303 kb on + strand, within AMB_RS19415 at 4235.303 kb on + strand, within AMB_RS19415 at 4235.304 kb on - strand, within AMB_RS19415 at 4235.304 kb on - strand, within AMB_RS19415 at 4235.304 kb on - strand, within AMB_RS19415 at 4235.891 kb on + strand at 4235.892 kb on - strand at 4235.892 kb on - strand at 4235.930 kb on + strand at 4235.930 kb on + strand at 4235.930 kb on + strand at 4235.931 kb on - strand at 4235.937 kb on + strand at 4235.937 kb on + strand at 4235.938 kb on - strand at 4235.944 kb on + strand at 4235.944 kb on + strand at 4235.945 kb on - strand at 4235.945 kb on - strand at 4235.949 kb on + strand at 4235.949 kb on + strand at 4235.950 kb on - strand at 4235.950 kb on - strand at 4235.950 kb on - strand at 4235.950 kb on - strand at 4235.951 kb on + strand at 4235.952 kb on - strand at 4235.952 kb on - strand at 4236.182 kb on + strand, within AMB_RS19420 at 4236.272 kb on - strand, within AMB_RS19420 at 4236.352 kb on - strand, within AMB_RS19420 at 4236.357 kb on + strand, within AMB_RS19420 at 4236.358 kb on - strand, within AMB_RS19420 at 4236.358 kb on - strand, within AMB_RS19420 at 4236.364 kb on + strand, within AMB_RS19420 at 4236.364 kb on + strand, within AMB_RS19420 at 4236.364 kb on + strand, within AMB_RS19420 at 4236.365 kb on - strand, within AMB_RS19420 at 4236.365 kb on - strand, within AMB_RS19420 at 4236.404 kb on + strand at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.630 kb on + strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425 at 4236.631 kb on - strand, within AMB_RS19425
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 4,233,901 + AMB_RS19410 0.25 +1.1 4,233,901 + AMB_RS19410 0.25 -0.7 4,233,901 + AMB_RS19410 0.25 -0.9 4,233,901 + AMB_RS19410 0.25 -0.6 4,233,901 + AMB_RS19410 0.25 -0.7 4,233,901 + AMB_RS19410 0.25 -0.8 4,233,901 + AMB_RS19410 0.25 -0.5 4,233,901 + AMB_RS19410 0.25 +0.1 4,233,901 + AMB_RS19410 0.25 +0.3 4,233,902 - AMB_RS19410 0.25 -1.9 4,233,902 - AMB_RS19410 0.25 -0.7 4,233,902 - AMB_RS19410 0.25 +0.1 4,234,020 + AMB_RS19410 0.35 -0.3 4,234,021 - AMB_RS19410 0.35 -0.3 4,234,021 - AMB_RS19410 0.35 +0.6 4,234,273 + AMB_RS19410 0.56 -0.1 4,234,273 + AMB_RS19410 0.56 -0.0 4,234,273 + AMB_RS19410 0.56 -0.2 4,234,273 + AMB_RS19410 0.56 -0.6 4,234,274 - AMB_RS19410 0.56 -3.1 4,234,274 - AMB_RS19410 0.56 +0.0 4,234,274 - AMB_RS19410 0.56 +0.1 4,234,274 - AMB_RS19410 0.56 -0.4 4,234,274 - AMB_RS19410 0.56 -1.5 4,234,274 - AMB_RS19410 0.56 +0.5 4,234,385 - AMB_RS19410 0.66 -0.3 4,234,516 + AMB_RS19410 0.77 -0.6 4,234,516 + AMB_RS19410 0.77 -0.3 4,234,517 - AMB_RS19410 0.77 +0.2 4,234,517 - AMB_RS19410 0.77 -0.8 4,234,517 - AMB_RS19410 0.77 +0.2 4,234,588 + AMB_RS19410 0.83 -1.2 4,234,588 + AMB_RS19410 0.83 -0.3 4,234,588 + AMB_RS19410 0.83 +0.1 4,234,588 + AMB_RS19410 0.83 +0.0 4,234,588 + AMB_RS19410 0.83 -2.2 4,234,589 - AMB_RS19410 0.83 -1.9 4,234,589 - AMB_RS19410 0.83 +0.2 4,234,589 - AMB_RS19410 0.83 -0.4 4,234,589 - AMB_RS19410 0.83 +0.3 4,234,589 - AMB_RS19410 0.83 +0.0 4,234,589 - AMB_RS19410 0.83 +0.5 4,234,775 - +0.7 4,234,813 + -0.1 4,234,813 + +0.2 4,234,814 - -0.0 4,234,814 - +0.3 4,234,814 - -0.0 4,234,814 - -1.1 4,234,816 + +0.7 4,234,816 + +1.5 4,234,816 + -0.1 4,234,816 + +0.4 4,234,816 + -1.7 4,234,816 + +1.2 4,234,816 + +0.6 4,234,817 - +0.1 4,234,817 - +0.6 4,234,817 - +0.7 4,234,817 - +0.5 4,234,817 - +1.0 4,234,818 + -0.9 4,234,819 - -1.0 4,234,916 + -0.0 4,234,916 + -0.5 4,234,916 + +0.2 4,234,916 + -0.0 4,234,916 + +0.1 4,234,917 - +0.1 4,234,997 + AMB_RS19415 0.12 -0.2 4,234,997 + AMB_RS19415 0.12 +0.7 4,234,997 + AMB_RS19415 0.12 -0.4 4,234,997 + AMB_RS19415 0.12 +0.3 4,234,997 + AMB_RS19415 0.12 +0.7 4,235,069 + AMB_RS19415 0.20 -1.5 4,235,303 + AMB_RS19415 0.43 +0.3 4,235,303 + AMB_RS19415 0.43 -0.2 4,235,304 - AMB_RS19415 0.43 -0.6 4,235,304 - AMB_RS19415 0.43 +0.4 4,235,304 - AMB_RS19415 0.43 -0.2 4,235,891 + -0.4 4,235,892 - -0.5 4,235,892 - -0.9 4,235,930 + -0.7 4,235,930 + -1.1 4,235,930 + +0.3 4,235,931 - +0.1 4,235,937 + +1.0 4,235,937 + +0.0 4,235,938 - -0.6 4,235,944 + -0.4 4,235,944 + -0.3 4,235,945 - -0.6 4,235,945 - -0.6 4,235,949 + -0.2 4,235,949 + -0.2 4,235,950 - -0.3 4,235,950 - -0.1 4,235,950 - +0.2 4,235,950 - -0.3 4,235,951 + -0.1 4,235,952 - +0.2 4,235,952 - -0.5 4,236,182 + AMB_RS19420 0.44 -0.2 4,236,272 - AMB_RS19420 0.65 -0.3 4,236,352 - AMB_RS19420 0.83 -0.5 4,236,357 + AMB_RS19420 0.85 -1.5 4,236,358 - AMB_RS19420 0.85 +0.2 4,236,358 - AMB_RS19420 0.85 -0.7 4,236,364 + AMB_RS19420 0.86 -0.2 4,236,364 + AMB_RS19420 0.86 -0.6 4,236,364 + AMB_RS19420 0.86 -1.2 4,236,365 - AMB_RS19420 0.86 -0.5 4,236,365 - AMB_RS19420 0.86 +0.1 4,236,404 + -3.6 4,236,630 + AMB_RS19425 0.26 -0.2 4,236,630 + AMB_RS19425 0.26 +2.1 4,236,630 + AMB_RS19425 0.26 -2.2 4,236,630 + AMB_RS19425 0.26 -1.4 4,236,630 + AMB_RS19425 0.26 -0.4 4,236,630 + AMB_RS19425 0.26 +0.2 4,236,630 + AMB_RS19425 0.26 +0.9 4,236,630 + AMB_RS19425 0.26 -1.0 4,236,631 - AMB_RS19425 0.26 -0.3 4,236,631 - AMB_RS19425 0.26 -0.0 4,236,631 - AMB_RS19425 0.26 -2.5 4,236,631 - AMB_RS19425 0.26 -1.6
Or see this region's nucleotide sequence