Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19315

Experiment: 150_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19305 and AMB_RS19310 are separated by 155 nucleotidesAMB_RS19310 and AMB_RS19315 are separated by 58 nucleotidesAMB_RS19315 and AMB_RS19320 are separated by 9 nucleotides AMB_RS19305: AMB_RS19305 - hypothetical protein, at 4,212,795 to 4,213,211 _RS19305 AMB_RS19310: AMB_RS19310 - hypothetical protein, at 4,213,367 to 4,213,741 _RS19310 AMB_RS19315: AMB_RS19315 - acyl-CoA synthetase, at 4,213,800 to 4,215,449 _RS19315 AMB_RS19320: AMB_RS19320 - hypothetical protein, at 4,215,459 to 4,216,832 _RS19320 Position (kb) 4213 4214 4215 4216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4212.915 kb on - strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.961 kb on + strand, within AMB_RS19305at 4212.962 kb on - strand, within AMB_RS19305at 4212.988 kb on + strand, within AMB_RS19305at 4212.988 kb on + strand, within AMB_RS19305at 4213.079 kb on - strand, within AMB_RS19305at 4213.223 kb on - strandat 4213.236 kb on + strandat 4213.236 kb on + strandat 4213.237 kb on - strandat 4213.237 kb on - strandat 4213.237 kb on - strandat 4213.309 kb on + strandat 4213.310 kb on - strandat 4213.310 kb on - strandat 4213.506 kb on + strand, within AMB_RS19310at 4213.506 kb on + strand, within AMB_RS19310at 4213.506 kb on + strand, within AMB_RS19310at 4213.905 kb on + strandat 4213.906 kb on - strandat 4213.906 kb on - strandat 4214.176 kb on + strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.177 kb on - strand, within AMB_RS19315at 4214.261 kb on - strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.602 kb on + strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.603 kb on - strand, within AMB_RS19315at 4214.872 kb on + strand, within AMB_RS19315at 4215.382 kb on + strandat 4215.382 kb on + strandat 4215.383 kb on - strandat 4215.427 kb on + strandat 4215.427 kb on + strandat 4215.428 kb on - strandat 4215.496 kb on + strandat 4215.496 kb on + strandat 4215.496 kb on + strandat 4215.496 kb on + strandat 4215.496 kb on + strandat 4215.496 kb on + strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.497 kb on - strandat 4215.556 kb on + strandat 4215.556 kb on + strandat 4215.556 kb on + strandat 4215.556 kb on + strandat 4215.556 kb on + strandat 4215.604 kb on + strand, within AMB_RS19320at 4215.604 kb on + strand, within AMB_RS19320at 4215.604 kb on + strand, within AMB_RS19320at 4215.604 kb on + strand, within AMB_RS19320at 4215.605 kb on - strand, within AMB_RS19320at 4215.689 kb on - strand, within AMB_RS19320at 4215.689 kb on - strand, within AMB_RS19320at 4215.689 kb on - strand, within AMB_RS19320at 4215.820 kb on + strand, within AMB_RS19320at 4215.991 kb on + strand, within AMB_RS19320at 4215.991 kb on + strand, within AMB_RS19320at 4215.991 kb on + strand, within AMB_RS19320at 4215.991 kb on + strand, within AMB_RS19320at 4216.024 kb on + strand, within AMB_RS19320at 4216.024 kb on + strand, within AMB_RS19320at 4216.024 kb on + strand, within AMB_RS19320at 4216.025 kb on - strand, within AMB_RS19320at 4216.025 kb on - strand, within AMB_RS19320at 4216.025 kb on - strand, within AMB_RS19320at 4216.025 kb on - strand, within AMB_RS19320at 4216.108 kb on + strand, within AMB_RS19320at 4216.108 kb on + strand, within AMB_RS19320at 4216.108 kb on + strand, within AMB_RS19320at 4216.108 kb on + strand, within AMB_RS19320at 4216.108 kb on + strand, within AMB_RS19320at 4216.109 kb on - strand, within AMB_RS19320at 4216.109 kb on - strand, within AMB_RS19320at 4216.109 kb on - strand, within AMB_RS19320at 4216.109 kb on - strand, within AMB_RS19320at 4216.163 kb on - strand, within AMB_RS19320at 4216.163 kb on - strand, within AMB_RS19320at 4216.163 kb on - strand, within AMB_RS19320at 4216.163 kb on - strand, within AMB_RS19320at 4216.318 kb on + strand, within AMB_RS19320at 4216.319 kb on - strand, within AMB_RS19320at 4216.330 kb on + strand, within AMB_RS19320at 4216.330 kb on + strand, within AMB_RS19320at 4216.330 kb on + strand, within AMB_RS19320at 4216.330 kb on + strand, within AMB_RS19320at 4216.331 kb on - strand, within AMB_RS19320at 4216.331 kb on - strand, within AMB_RS19320

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
remove
4,212,915 - AMB_RS19305 0.29 -0.0
4,212,961 + AMB_RS19305 0.40 +0.8
4,212,961 + AMB_RS19305 0.40 +0.5
4,212,961 + AMB_RS19305 0.40 +0.3
4,212,961 + AMB_RS19305 0.40 +0.1
4,212,962 - AMB_RS19305 0.40 +0.2
4,212,988 + AMB_RS19305 0.46 +1.1
4,212,988 + AMB_RS19305 0.46 +1.6
4,213,079 - AMB_RS19305 0.68 +0.3
4,213,223 - -0.2
4,213,236 + +0.0
4,213,236 + -1.3
4,213,237 - -0.2
4,213,237 - +0.1
4,213,237 - -0.3
4,213,309 + -0.3
4,213,310 - +0.7
4,213,310 - +0.1
4,213,506 + AMB_RS19310 0.37 -0.3
4,213,506 + AMB_RS19310 0.37 -1.3
4,213,506 + AMB_RS19310 0.37 -0.1
4,213,905 + -0.7
4,213,906 - -0.3
4,213,906 - -0.2
4,214,176 + AMB_RS19315 0.23 -0.2
4,214,177 - AMB_RS19315 0.23 -0.4
4,214,177 - AMB_RS19315 0.23 -0.3
4,214,177 - AMB_RS19315 0.23 -0.4
4,214,177 - AMB_RS19315 0.23 +0.6
4,214,261 - AMB_RS19315 0.28 +0.2
4,214,602 + AMB_RS19315 0.49 +0.2
4,214,602 + AMB_RS19315 0.49 +0.4
4,214,602 + AMB_RS19315 0.49 -0.3
4,214,602 + AMB_RS19315 0.49 -0.2
4,214,602 + AMB_RS19315 0.49 +0.1
4,214,602 + AMB_RS19315 0.49 +1.3
4,214,602 + AMB_RS19315 0.49 -0.1
4,214,602 + AMB_RS19315 0.49 +0.1
4,214,602 + AMB_RS19315 0.49 -0.1
4,214,602 + AMB_RS19315 0.49 +0.2
4,214,603 - AMB_RS19315 0.49 +0.1
4,214,603 - AMB_RS19315 0.49 -1.0
4,214,603 - AMB_RS19315 0.49 -0.2
4,214,603 - AMB_RS19315 0.49 -0.1
4,214,872 + AMB_RS19315 0.65 -2.1
4,215,382 + -0.7
4,215,382 + +0.3
4,215,383 - -0.3
4,215,427 + +0.3
4,215,427 + -1.1
4,215,428 - +0.1
4,215,496 + -0.0
4,215,496 + +0.1
4,215,496 + -0.0
4,215,496 + +0.1
4,215,496 + +0.0
4,215,496 + -0.1
4,215,497 - -0.4
4,215,497 - +0.0
4,215,497 - -1.2
4,215,497 - +0.1
4,215,497 - -0.4
4,215,497 - +0.4
4,215,497 - -0.1
4,215,497 - -1.0
4,215,497 - -0.8
4,215,556 + -0.4
4,215,556 + -0.8
4,215,556 + -0.8
4,215,556 + -0.4
4,215,556 + -0.4
4,215,604 + AMB_RS19320 0.11 -0.5
4,215,604 + AMB_RS19320 0.11 -0.5
4,215,604 + AMB_RS19320 0.11 -0.6
4,215,604 + AMB_RS19320 0.11 -1.2
4,215,605 - AMB_RS19320 0.11 -0.1
4,215,689 - AMB_RS19320 0.17 -0.1
4,215,689 - AMB_RS19320 0.17 -0.4
4,215,689 - AMB_RS19320 0.17 -0.8
4,215,820 + AMB_RS19320 0.26 +0.4
4,215,991 + AMB_RS19320 0.39 -0.5
4,215,991 + AMB_RS19320 0.39 -0.3
4,215,991 + AMB_RS19320 0.39 -0.4
4,215,991 + AMB_RS19320 0.39 +0.1
4,216,024 + AMB_RS19320 0.41 -1.1
4,216,024 + AMB_RS19320 0.41 -1.7
4,216,024 + AMB_RS19320 0.41 +0.2
4,216,025 - AMB_RS19320 0.41 +2.1
4,216,025 - AMB_RS19320 0.41 +0.4
4,216,025 - AMB_RS19320 0.41 +0.3
4,216,025 - AMB_RS19320 0.41 -0.2
4,216,108 + AMB_RS19320 0.47 -0.2
4,216,108 + AMB_RS19320 0.47 +0.5
4,216,108 + AMB_RS19320 0.47 -0.3
4,216,108 + AMB_RS19320 0.47 -0.5
4,216,108 + AMB_RS19320 0.47 -0.4
4,216,109 - AMB_RS19320 0.47 +0.2
4,216,109 - AMB_RS19320 0.47 -0.2
4,216,109 - AMB_RS19320 0.47 +0.0
4,216,109 - AMB_RS19320 0.47 +0.4
4,216,163 - AMB_RS19320 0.51 -0.8
4,216,163 - AMB_RS19320 0.51 +0.1
4,216,163 - AMB_RS19320 0.51 -0.1
4,216,163 - AMB_RS19320 0.51 -1.2
4,216,318 + AMB_RS19320 0.63 +0.8
4,216,319 - AMB_RS19320 0.63 -0.5
4,216,330 + AMB_RS19320 0.63 -4.2
4,216,330 + AMB_RS19320 0.63 +0.6
4,216,330 + AMB_RS19320 0.63 +0.1
4,216,330 + AMB_RS19320 0.63 +0.0
4,216,331 - AMB_RS19320 0.63 -0.8
4,216,331 - AMB_RS19320 0.63 -0.3

Or see this region's nucleotide sequence