Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17755

Experiment: 150_mag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS17750 and AMB_RS17755 are separated by 56 nucleotidesAMB_RS17755 and AMB_RS17760 overlap by 35 nucleotides AMB_RS17750: AMB_RS17750 - ketol-acid reductoisomerase, at 3,856,263 to 3,857,282 _RS17750 AMB_RS17755: AMB_RS17755 - TIGR02453 family protein, at 3,857,339 to 3,858,058 _RS17755 AMB_RS17760: AMB_RS17760 - hypothetical protein, at 3,858,024 to 3,859,253 _RS17760 Position (kb) 3857 3858 3859Strain fitness (log2 ratio) -2 -1 0 1at 3857.280 kb on + strandat 3857.280 kb on + strandat 3857.281 kb on - strandat 3857.281 kb on - strandat 3857.281 kb on - strandat 3857.706 kb on - strand, within AMB_RS17755at 3857.721 kb on - strand, within AMB_RS17755at 3857.893 kb on - strand, within AMB_RS17755at 3858.014 kb on + strandat 3858.014 kb on + strandat 3858.014 kb on + strandat 3858.014 kb on + strandat 3858.014 kb on + strandat 3858.014 kb on + strandat 3858.015 kb on - strandat 3858.239 kb on - strand, within AMB_RS17760at 3858.384 kb on + strand, within AMB_RS17760at 3858.399 kb on - strand, within AMB_RS17760at 3858.685 kb on + strand, within AMB_RS17760at 3858.685 kb on + strand, within AMB_RS17760at 3858.685 kb on + strand, within AMB_RS17760at 3858.686 kb on - strand, within AMB_RS17760at 3858.724 kb on + strand, within AMB_RS17760at 3858.742 kb on + strand, within AMB_RS17760at 3858.742 kb on + strand, within AMB_RS17760at 3858.742 kb on + strand, within AMB_RS17760at 3858.742 kb on + strand, within AMB_RS17760at 3858.742 kb on + strand, within AMB_RS17760at 3858.742 kb on + strand, within AMB_RS17760at 3858.743 kb on - strand, within AMB_RS17760at 3858.743 kb on - strand, within AMB_RS17760at 3858.743 kb on - strand, within AMB_RS17760at 3858.743 kb on - strand, within AMB_RS17760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_3
remove
3,857,280 + -2.1
3,857,280 + -0.6
3,857,281 - -1.7
3,857,281 - +0.6
3,857,281 - -1.2
3,857,706 - AMB_RS17755 0.51 -1.5
3,857,721 - AMB_RS17755 0.53 -0.3
3,857,893 - AMB_RS17755 0.77 -0.3
3,858,014 + +0.1
3,858,014 + -0.7
3,858,014 + -0.5
3,858,014 + -2.4
3,858,014 + -0.1
3,858,014 + -0.4
3,858,015 - -0.2
3,858,239 - AMB_RS17760 0.17 -1.9
3,858,384 + AMB_RS17760 0.29 -0.1
3,858,399 - AMB_RS17760 0.30 +0.2
3,858,685 + AMB_RS17760 0.54 -0.5
3,858,685 + AMB_RS17760 0.54 +0.3
3,858,685 + AMB_RS17760 0.54 -0.9
3,858,686 - AMB_RS17760 0.54 +0.6
3,858,724 + AMB_RS17760 0.57 -0.9
3,858,742 + AMB_RS17760 0.58 -0.9
3,858,742 + AMB_RS17760 0.58 +0.1
3,858,742 + AMB_RS17760 0.58 -0.7
3,858,742 + AMB_RS17760 0.58 +0.0
3,858,742 + AMB_RS17760 0.58 -0.4
3,858,742 + AMB_RS17760 0.58 -0.8
3,858,743 - AMB_RS17760 0.58 -0.8
3,858,743 - AMB_RS17760 0.58 -0.9
3,858,743 - AMB_RS17760 0.58 -0.5
3,858,743 - AMB_RS17760 0.58 +0.6

Or see this region's nucleotide sequence