Experiment: 150_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS16350 and AMB_RS16355 are separated by 466 nucleotides AMB_RS16355 and AMB_RS16360 are separated by 6 nucleotides AMB_RS16360 and AMB_RS16365 are separated by 9 nucleotides
AMB_RS16350: AMB_RS16350 - N-acetylmuramoyl-L-alanine amidase, at 3,500,424 to 3,502,118
_RS16350
AMB_RS16355: AMB_RS16355 - ribonuclease E/G, at 3,502,585 to 3,505,326
_RS16355
AMB_RS16360: AMB_RS16360 - hypothetical protein, at 3,505,333 to 3,506,046
_RS16360
AMB_RS16365: AMB_RS16365 - DNA-binding response regulator, at 3,506,056 to 3,506,733
_RS16365
Position (kb)
3502
3503
3504
3505
3506 Strain fitness (log2 ratio)
-2
-1
0
1 at 3502.130 kb on - strand at 3502.132 kb on - strand at 3502.252 kb on + strand at 3505.681 kb on + strand, within AMB_RS16360 at 3505.681 kb on + strand, within AMB_RS16360 at 3505.682 kb on - strand, within AMB_RS16360 at 3505.682 kb on - strand, within AMB_RS16360 at 3505.682 kb on - strand, within AMB_RS16360 at 3505.682 kb on - strand, within AMB_RS16360 at 3505.969 kb on + strand, within AMB_RS16360 at 3505.969 kb on + strand, within AMB_RS16360 at 3505.997 kb on + strand at 3505.998 kb on - strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.029 kb on + strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.030 kb on - strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.032 kb on + strand at 3506.033 kb on - strand at 3506.033 kb on - strand at 3506.033 kb on - strand at 3506.033 kb on - strand at 3506.033 kb on - strand at 3506.044 kb on + strand at 3506.188 kb on + strand, within AMB_RS16365
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_3 remove 3,502,130 - -0.6 3,502,132 - -0.3 3,502,252 + -0.4 3,505,681 + AMB_RS16360 0.49 -0.2 3,505,681 + AMB_RS16360 0.49 +1.3 3,505,682 - AMB_RS16360 0.49 -0.6 3,505,682 - AMB_RS16360 0.49 -0.3 3,505,682 - AMB_RS16360 0.49 -2.3 3,505,682 - AMB_RS16360 0.49 -0.5 3,505,969 + AMB_RS16360 0.89 +0.5 3,505,969 + AMB_RS16360 0.89 -0.9 3,505,997 + -0.2 3,505,998 - -1.2 3,506,029 + -0.6 3,506,029 + -0.4 3,506,029 + +0.7 3,506,029 + -0.9 3,506,029 + +0.1 3,506,029 + -0.0 3,506,029 + +0.1 3,506,029 + +0.9 3,506,029 + -0.5 3,506,030 - -0.5 3,506,030 - -0.0 3,506,030 - -0.1 3,506,030 - +0.1 3,506,030 - +0.5 3,506,030 - -0.3 3,506,030 - -0.1 3,506,030 - +1.0 3,506,030 - -0.4 3,506,030 - +0.2 3,506,030 - -0.0 3,506,030 - -0.1 3,506,030 - +1.5 3,506,030 - -0.2 3,506,030 - +0.7 3,506,030 - +0.0 3,506,030 - -1.2 3,506,030 - -0.8 3,506,032 + -0.2 3,506,032 + -0.4 3,506,032 + -0.1 3,506,032 + +0.2 3,506,032 + -0.2 3,506,032 + -0.4 3,506,032 + +0.1 3,506,032 + +0.4 3,506,033 - -0.9 3,506,033 - -0.7 3,506,033 - -0.6 3,506,033 - +1.2 3,506,033 - +0.1 3,506,044 + +1.4 3,506,188 + AMB_RS16365 0.19 -0.9
Or see this region's nucleotide sequence